Clone Sequence Records
BO15867.3prime Sequence
413 bp (413 high quality bases) assembled on 2006-06-02
> BO15867.3prime
ATGGTCTAGAAAGCTTGCCTTGGTGGGGGCGTACTCGTTCTTCTTCACAT
TGTGGGGGGAATAGCGATTGTACAATCCCCAGATGGAGTTCATCAGCTTG
TCGTTGTACTTGTTGGGCGAGTACTCGCGTTGGGTTAGGGCGTTCCCGTT
GTCAACGGAACCCTTATCTGCGGCAGCGGACCTCAGACGGGCGATGATCA
GCTCACGTTCGTTGAATTGCTCGCGAATCTTGCAGGCTGCGAATGCACCT
TGTGGAATGGCGGCCATCTTAACAACACTTAGGGAAATAACGCTCAGAAG
GGAGATGATGAAGTCAAAGTTTCGCAATGGGCTTGTATTCCAGCACTCGG
TGAAATGCTGATCGAGATTGATGATTTTTCCGCACTGCTGCAGCAGCATG
TCGACTGATAACT
BO15867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16926-PA | 384 | CG16926-RA | 1..381 | 399..19 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16926-RB | 979 | CG16926-RB | 367..747 | 399..19 | 1905 | 100 | Minus |
CG16926-RA | 884 | CG16926-RA | 272..652 | 399..19 | 1905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19500716..19500860 | 132..276 | 725 | 100 | Plus |
2R | 25286936 | 2R | 19500929..19501052 | 276..399 | 620 | 100 | Plus |
2R | 25286936 | 2R | 19500527..19500639 | 19..131 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:10:54 has no hits.
BO15867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:24 Download gff for
BO15867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-PA | 1..384 | 16..399 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:44 Download gff for
BO15867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-PA | 1..384 | 16..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:58:30 Download gff for
BO15867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-RA | 270..652 | 19..402 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:30 Download gff for
BO15867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-RA | 270..652 | 19..402 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:30 Download gff for
BO15867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19500527..19500639 | 19..131 | 100 | <- | Plus |
2R | 19500716..19500859 | 132..275 | 100 | <- | Plus |
2R | 19500929..19501054 | 276..402 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:58:30 Download gff for
BO15867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15388032..15388144 | 19..131 | 100 | <- | Plus |
arm_2R | 15388221..15388364 | 132..275 | 100 | <- | Plus |
arm_2R | 15388434..15388559 | 276..402 | 99 | | Plus |
BO15867.5prime Sequence
413 bp (413 high quality bases) assembled on 2006-05-30
> BO15867.5prime
GAAGTTATCAGTCGACATGCTGCTGCAGCAGTGCGGAAAAATCATCAATC
TCGATCAGCATTTCACCGAGTGCTGGAATACAAGCCCATTGCGAAACTTT
GACTTCATCATCTCCCTTCTGAGCGTTATTTCCCTAAGTGTTGTTAAGAT
GGCCGCCATTCCACAAGGTGCATTCGCAGCCTGTAAGATTCGCGAGCAAT
TCAACGAACGTGAGCTGATCATCGCCCGTCTGAGGTCCGCTGCCGCAGAT
AAGGGTTCCGTTGACAACGGGAACGCCCTAACCCAACGCGAGTACTCGCC
CAACAAGTACAACGACAAGCTGATGAACTCCATCTGGGGATTGTACAATC
GCTATTCCCCCCACAATGTGAAGAAGAACGAGTACGCCCCCACCAAGGCA
AGCTTTCTAGACC
BO15867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16926-PA | 384 | CG16926-RA | 1..381 | 17..397 | 1880 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16926-RB | 979 | CG16926-RB | 367..747 | 17..397 | 1890 | 99.7 | Plus |
CG16926-RA | 884 | CG16926-RA | 272..652 | 17..397 | 1890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19500716..19500860 | 284..140 | 710 | 99.3 | Minus |
2R | 25286936 | 2R | 19500929..19501052 | 140..17 | 620 | 100 | Minus |
2R | 25286936 | 2R | 19500527..19500639 | 397..285 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:06:17 has no hits.
BO15867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:25 Download gff for
BO15867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-PA | 1..384 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:45 Download gff for
BO15867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-PA | 1..384 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:56:38 Download gff for
BO15867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-RA | 270..652 | 14..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:14 Download gff for
BO15867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-RA | 270..652 | 14..397 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:14 Download gff for
BO15867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19500527..19500639 | 285..397 | 100 | <- | Minus |
2R | 19500716..19500859 | 141..284 | 99 | <- | Minus |
2R | 19500929..19501054 | 14..140 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:56:38 Download gff for
BO15867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15388032..15388144 | 285..397 | 100 | <- | Minus |
arm_2R | 15388221..15388364 | 141..284 | 99 | <- | Minus |
arm_2R | 15388434..15388559 | 14..140 | 99 | | Minus |
BO15867.complete Sequence
415 bp (415 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633612
> BO15867.complete
GAAGTTATCAGTCGACATGCTGCTGCAGCAGTGCGGAAAAATCATCAATC
TCGATCAGCATTTCACCGAGTGCTGGAATACAAGCCCATTGCGAAACTTT
GACTTCATCATCTCCCTTCTGAGCGTTATTTCCCTAAGTGTTGTTAAGAT
GGCCGCCATTCCACAAGGTGCATTCGCAGCCTGCAAGATTCGCGAGCAAT
TCAACGAACGTGAGCTGATCATCGCCCGTCTGAGGTCCGCTGCCGCAGAT
AAGGGTTCCGTTGACAACGGGAACGCCCTAACCCAACGCGAGTACTCGCC
CAACAAGTACAACGACAAGCTGATGAACTCCATCTGGGGATTGTACAATC
GCTATTCCCCCCACAATGTGAAGAAGAACGAGTACGCCCCCACCAAGGCA
AGCTTTCTAGACCAT
BO15867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16926-RB | 384 | CG16926-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
CG16926-RA | 384 | CG16926-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16926-RB | 979 | CG16926-RB | 367..747 | 17..397 | 1905 | 100 | Plus |
CG16926-RA | 884 | CG16926-RA | 272..652 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19500716..19500860 | 284..140 | 725 | 100 | Minus |
2R | 25286936 | 2R | 19500929..19501052 | 140..17 | 620 | 100 | Minus |
2R | 25286936 | 2R | 19500527..19500639 | 397..285 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:51:49 has no hits.
BO15867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:28 Download gff for
BO15867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-RA | 1..384 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:58 Download gff for
BO15867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-RA | 243..625 | 14..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:11 Download gff for
BO15867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-RA | 272..652 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:28 Download gff for
BO15867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-RA | 243..625 | 14..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:25 Download gff for
BO15867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16926-RA | 272..652 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:25 Download gff for
BO15867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19500524..19500639 | 285..399 | 98 | <- | Minus |
2R | 19500716..19500859 | 141..284 | 100 | <- | Minus |
2R | 19500929..19501052 | 17..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:11 Download gff for
BO15867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15388029..15388144 | 285..399 | 98 | <- | Minus |
arm_2R | 15388221..15388364 | 141..284 | 100 | <- | Minus |
arm_2R | 15388434..15388557 | 17..140 | 100 | | Minus |
BO15867.pep Sequence
Translation from 16 to 415
> BO15867.pep
MLLQQCGKIINLDQHFTECWNTSPLRNFDFIISLLSVISLSVVKMAAIPQ
GAFAACKIREQFNERELIIARLRSAAADKGSVDNGNALTQREYSPNKYND
KLMNSIWGLYNRYSPHNVKKNEYAPTKASFLDH
BO15867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16926-PB | 127 | CG16926-PB | 1..127 | 1..127 | 664 | 100 | Plus |
CG16926-PA | 127 | CG16926-PA | 1..127 | 1..127 | 664 | 100 | Plus |