Clone BO15870 Report

Search the DGRC for BO15870

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptPHGPx-RC
Protein status:BO15870.pep: validated full length
Sequenced Size:628

Clone Sequence Records

BO15870.3prime Sequence

626 bp (626 high quality bases) assembled on 2006-06-02

> BO15870.3prime
ATGGTCTAGAAAGCTTGCCAGCAGCTTTTCAATGTCCTTGGCGATGTCCA
TGGGATCGGTGGTCGGGGCATATCGGTTGATGGGCACGCCCTCCTTGTTC
ACCAGAAACTTGGTGAAGTTCCACTTGATTCCGCTGCCCAGGGTGCCGGT
CTGCTTGGCCTTTAGGTATTTGTACAGCGGCGCCGCATTGTCTCCATTCA
CATCGACCTTGGCGAACACCTCGCCGATGTCAGCCTTGGAGTCGCGCAGG
TGGCACACCATGGCCTCTCCATCGGCCTCCGGCATCTGGGACCCAAACTG
ATTGCACGGGAAGTTGAGGATCACCAGGCCGCGCTCGCCGTACTTCTCCT
TTAGATCCGTCAGCTTCTCGTAGTTGTTCTTGGTCAGGCCGCACTTGGAG
GCGATGTTCACCACCAGGACCACCTTGCCCTTGTACTTTTCCAGGGAAAC
ATCGTTGCCATGGGTATCCTTCACGGTGAACTCGTAGATCGAGGCGGCGT
TCTTGTAATCTCCGTTAGCAGACATGTCGATTTGCATGGTGAAGTAGATG
TACGATCCCAGGGCGATTGCCACGGACCCCAGAAAAAAGTGGACGATGGA
GCGGCCAGCCATGTCGACTGATAACT

BO15870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PC 597 PHGPx-RC 1..594 612..19 2970 100 Minus
CG12013-PD 717 PHGPx-RD 202..714 531..19 2565 100 Minus
CG12013-PB 510 PHGPx-RB 1..507 525..19 2535 100 Minus
CG12013-PA 510 PHGPx-RA 1..507 525..19 2535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RC 1148 CG12013-RC 368..961 612..19 2970 100 Minus
PHGPx-RA 803 CG12013-RA 102..616 533..19 2575 100 Minus
PHGPx-RD 1014 CG12013-RD 315..827 531..19 2565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327860..3328185 531..206 1630 100 Minus
3L 28110227 3L 3328249..3328439 209..19 955 100 Minus
3L 28110227 3L 3326632..3326712 612..532 405 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:20:30 has no hits.

BO15870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:31 Download gff for BO15870.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-PC 1..597 18..612 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:52 Download gff for BO15870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PC 1..597 18..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:14 Download gff for BO15870.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 362..961 19..621 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:29 Download gff for BO15870.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 362..961 19..621 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:29 Download gff for BO15870.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3326626..3326712 532..621 96 -> Minus
3L 3327860..3328183 208..531 100 -> Minus
3L 3328251..3328439 19..207 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:14 Download gff for BO15870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3326626..3326712 532..621 96 -> Minus
arm_3L 3327860..3328183 208..531 100 -> Minus
arm_3L 3328251..3328439 19..207 100   Minus

BO15870.5prime Sequence

626 bp (626 high quality bases) assembled on 2006-05-30

> BO15870.5prime
GAAGTTATCAGTCGACATGGCTGGCCGCTCCATCGTCCACTTTTTTCTGG
GGTCCGTGGCAATCGCCCTGGGATCGTACATCTACTTCACCATGCAAATC
GACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTACGAGTT
CACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTACAAGG
GCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGACCAAG
AACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAGCGCGG
CCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGATGCCGG
AGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGGCTGAC
ATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCGGCGCC
GCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAGCGGAA
TCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGCCCATC
AACCGATATGCCCCGACCACCGATCCCATGGACATCGCCAAGGACATTGA
AAAGCTGCTGGCAAGCTTTCTAGACC

BO15870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PC 597 PHGPx-RC 1..594 17..610 2970 100 Plus
CG12013-PD 717 PHGPx-RD 202..714 98..610 2565 100 Plus
CG12013-PB 510 PHGPx-RB 1..507 104..610 2535 100 Plus
CG12013-PA 510 PHGPx-RA 1..507 104..610 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RC 1148 CG12013-RC 368..961 17..610 2970 100 Plus
PHGPx-RA 803 CG12013-RA 102..616 96..610 2575 100 Plus
PHGPx-RD 1014 CG12013-RD 315..827 98..610 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327860..3328185 98..423 1630 100 Plus
3L 28110227 3L 3328249..3328439 420..610 955 100 Plus
3L 28110227 3L 3326632..3326712 17..97 405 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:34:20 has no hits.

BO15870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:32 Download gff for BO15870.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-PC 1..597 17..611 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:53 Download gff for BO15870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PC 1..597 17..611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:52 Download gff for BO15870.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 362..961 8..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:09 Download gff for BO15870.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 362..961 8..610 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:09 Download gff for BO15870.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3326626..3326712 8..97 96 -> Plus
3L 3327860..3328183 98..421 100 -> Plus
3L 3328251..3328439 422..610 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:52 Download gff for BO15870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3326626..3326712 8..97 96 -> Plus
arm_3L 3327860..3328183 98..421 100 -> Plus
arm_3L 3328251..3328439 422..610 100   Plus

BO15870.complete Sequence

628 bp (628 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633613

> BO15870.complete
GAAGTTATCAGTCGACATGGCTGGCCGCTCCATCGTCCACTTTTTTCTGG
GGTCCGTGGCAATCGCCCTGGGATCGTACATCTACTTCACCATGCAAATC
GACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTACGAGTT
CACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTACAAGG
GCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGACCAAG
AACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAGCGCGG
CCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGATGCCGG
AGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGGCTGAC
ATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCGGCGCC
GCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAGCGGAA
TCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGCCCATC
AACCGATATGCCCCGACCACCGATCCCATGGACATCGCCAAGGACATTGA
AAAGCTGCTGGCAAGCTTTCTAGACCAT

BO15870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RC 597 CG12013-PC 1..594 17..610 2970 100 Plus
PHGPx-RD 717 CG12013-PD 202..714 98..610 2565 100 Plus
PHGPx-RA 510 CG12013-PA 1..507 104..610 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RC 1148 CG12013-RC 368..961 17..610 2970 100 Plus
PHGPx-RA 803 CG12013-RA 102..616 96..610 2575 100 Plus
PHGPx-RD 1014 CG12013-RD 315..827 98..610 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327860..3328185 98..423 1630 100 Plus
3L 28110227 3L 3328249..3328439 420..610 955 100 Plus
3L 28110227 3L 3326632..3326712 17..97 405 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:36:42 has no hits.

BO15870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:17 Download gff for BO15870.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 1..597 17..611 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:40 Download gff for BO15870.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 336..935 8..610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:40 Download gff for BO15870.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 368..961 17..612 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:17 Download gff for BO15870.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 336..935 8..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:14 Download gff for BO15870.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 368..961 17..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:14 Download gff for BO15870.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3326632..3326712 17..97 100 -> Plus
3L 3327860..3328183 98..421 100 -> Plus
3L 3328251..3328439 422..612 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:40 Download gff for BO15870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3328251..3328439 422..612 98   Plus
arm_3L 3326632..3326712 17..97 100 -> Plus
arm_3L 3327860..3328183 98..421 100 -> Plus

BO15870.pep Sequence

Translation from 16 to 628

> BO15870.pep
MAGRSIVHFFLGSVAIALGSYIYFTMQIDMSANGDYKNAASIYEFTVKDT
HGNDVSLEKYKGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILN
FPCNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYL
KAKQTGTLGSGIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLLAS
FLDH

BO15870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-PC 198 CG12013-PC 1..198 1..198 1032 100 Plus
PHGPx-PD 238 CG12013-PD 68..238 28..198 897 100 Plus
PHGPx-PA 169 CG12013-PA 1..169 30..198 887 100 Plus
CG15116-PA 193 CG15116-PA 33..191 35..198 403 50.6 Plus