Clone Sequence Records
BO15870.3prime Sequence
626 bp (626 high quality bases) assembled on 2006-06-02
> BO15870.3prime
ATGGTCTAGAAAGCTTGCCAGCAGCTTTTCAATGTCCTTGGCGATGTCCA
TGGGATCGGTGGTCGGGGCATATCGGTTGATGGGCACGCCCTCCTTGTTC
ACCAGAAACTTGGTGAAGTTCCACTTGATTCCGCTGCCCAGGGTGCCGGT
CTGCTTGGCCTTTAGGTATTTGTACAGCGGCGCCGCATTGTCTCCATTCA
CATCGACCTTGGCGAACACCTCGCCGATGTCAGCCTTGGAGTCGCGCAGG
TGGCACACCATGGCCTCTCCATCGGCCTCCGGCATCTGGGACCCAAACTG
ATTGCACGGGAAGTTGAGGATCACCAGGCCGCGCTCGCCGTACTTCTCCT
TTAGATCCGTCAGCTTCTCGTAGTTGTTCTTGGTCAGGCCGCACTTGGAG
GCGATGTTCACCACCAGGACCACCTTGCCCTTGTACTTTTCCAGGGAAAC
ATCGTTGCCATGGGTATCCTTCACGGTGAACTCGTAGATCGAGGCGGCGT
TCTTGTAATCTCCGTTAGCAGACATGTCGATTTGCATGGTGAAGTAGATG
TACGATCCCAGGGCGATTGCCACGGACCCCAGAAAAAAGTGGACGATGGA
GCGGCCAGCCATGTCGACTGATAACT
BO15870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PC | 597 | PHGPx-RC | 1..594 | 612..19 | 2970 | 100 | Minus |
CG12013-PD | 717 | PHGPx-RD | 202..714 | 531..19 | 2565 | 100 | Minus |
CG12013-PB | 510 | PHGPx-RB | 1..507 | 525..19 | 2535 | 100 | Minus |
CG12013-PA | 510 | PHGPx-RA | 1..507 | 525..19 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RC | 1148 | CG12013-RC | 368..961 | 612..19 | 2970 | 100 | Minus |
PHGPx-RA | 803 | CG12013-RA | 102..616 | 533..19 | 2575 | 100 | Minus |
PHGPx-RD | 1014 | CG12013-RD | 315..827 | 531..19 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 531..206 | 1630 | 100 | Minus |
3L | 28110227 | 3L | 3328249..3328439 | 209..19 | 955 | 100 | Minus |
3L | 28110227 | 3L | 3326632..3326712 | 612..532 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:20:30 has no hits.
BO15870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:31 Download gff for
BO15870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PC | 1..597 | 18..612 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:52 Download gff for
BO15870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PC | 1..597 | 18..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:14 Download gff for
BO15870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 362..961 | 19..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:29 Download gff for
BO15870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 362..961 | 19..621 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:29 Download gff for
BO15870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3326626..3326712 | 532..621 | 96 | -> | Minus |
3L | 3327860..3328183 | 208..531 | 100 | -> | Minus |
3L | 3328251..3328439 | 19..207 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:14 Download gff for
BO15870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3326626..3326712 | 532..621 | 96 | -> | Minus |
arm_3L | 3327860..3328183 | 208..531 | 100 | -> | Minus |
arm_3L | 3328251..3328439 | 19..207 | 100 | | Minus |
BO15870.5prime Sequence
626 bp (626 high quality bases) assembled on 2006-05-30
> BO15870.5prime
GAAGTTATCAGTCGACATGGCTGGCCGCTCCATCGTCCACTTTTTTCTGG
GGTCCGTGGCAATCGCCCTGGGATCGTACATCTACTTCACCATGCAAATC
GACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTACGAGTT
CACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTACAAGG
GCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGACCAAG
AACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAGCGCGG
CCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGATGCCGG
AGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGGCTGAC
ATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCGGCGCC
GCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAGCGGAA
TCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGCCCATC
AACCGATATGCCCCGACCACCGATCCCATGGACATCGCCAAGGACATTGA
AAAGCTGCTGGCAAGCTTTCTAGACC
BO15870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PC | 597 | PHGPx-RC | 1..594 | 17..610 | 2970 | 100 | Plus |
CG12013-PD | 717 | PHGPx-RD | 202..714 | 98..610 | 2565 | 100 | Plus |
CG12013-PB | 510 | PHGPx-RB | 1..507 | 104..610 | 2535 | 100 | Plus |
CG12013-PA | 510 | PHGPx-RA | 1..507 | 104..610 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RC | 1148 | CG12013-RC | 368..961 | 17..610 | 2970 | 100 | Plus |
PHGPx-RA | 803 | CG12013-RA | 102..616 | 96..610 | 2575 | 100 | Plus |
PHGPx-RD | 1014 | CG12013-RD | 315..827 | 98..610 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 98..423 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 3328249..3328439 | 420..610 | 955 | 100 | Plus |
3L | 28110227 | 3L | 3326632..3326712 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:34:20 has no hits.
BO15870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:32 Download gff for
BO15870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PC | 1..597 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:53 Download gff for
BO15870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PC | 1..597 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:52 Download gff for
BO15870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 362..961 | 8..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:09 Download gff for
BO15870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 362..961 | 8..610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:09 Download gff for
BO15870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3326626..3326712 | 8..97 | 96 | -> | Plus |
3L | 3327860..3328183 | 98..421 | 100 | -> | Plus |
3L | 3328251..3328439 | 422..610 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:52 Download gff for
BO15870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3326626..3326712 | 8..97 | 96 | -> | Plus |
arm_3L | 3327860..3328183 | 98..421 | 100 | -> | Plus |
arm_3L | 3328251..3328439 | 422..610 | 100 | | Plus |
BO15870.complete Sequence
628 bp (628 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633613
> BO15870.complete
GAAGTTATCAGTCGACATGGCTGGCCGCTCCATCGTCCACTTTTTTCTGG
GGTCCGTGGCAATCGCCCTGGGATCGTACATCTACTTCACCATGCAAATC
GACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTACGAGTT
CACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTACAAGG
GCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGACCAAG
AACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAGCGCGG
CCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGATGCCGG
AGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGGCTGAC
ATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCGGCGCC
GCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAGCGGAA
TCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGCCCATC
AACCGATATGCCCCGACCACCGATCCCATGGACATCGCCAAGGACATTGA
AAAGCTGCTGGCAAGCTTTCTAGACCAT
BO15870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RC | 597 | CG12013-PC | 1..594 | 17..610 | 2970 | 100 | Plus |
PHGPx-RD | 717 | CG12013-PD | 202..714 | 98..610 | 2565 | 100 | Plus |
PHGPx-RA | 510 | CG12013-PA | 1..507 | 104..610 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RC | 1148 | CG12013-RC | 368..961 | 17..610 | 2970 | 100 | Plus |
PHGPx-RA | 803 | CG12013-RA | 102..616 | 96..610 | 2575 | 100 | Plus |
PHGPx-RD | 1014 | CG12013-RD | 315..827 | 98..610 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 98..423 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 3328249..3328439 | 420..610 | 955 | 100 | Plus |
3L | 28110227 | 3L | 3326632..3326712 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:36:42 has no hits.
BO15870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:17 Download gff for
BO15870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 1..597 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:40 Download gff for
BO15870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 336..935 | 8..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:40 Download gff for
BO15870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 368..961 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:17 Download gff for
BO15870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 336..935 | 8..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:14 Download gff for
BO15870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 368..961 | 17..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:14 Download gff for
BO15870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3326632..3326712 | 17..97 | 100 | -> | Plus |
3L | 3327860..3328183 | 98..421 | 100 | -> | Plus |
3L | 3328251..3328439 | 422..612 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:40 Download gff for
BO15870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3328251..3328439 | 422..612 | 98 | | Plus |
arm_3L | 3326632..3326712 | 17..97 | 100 | -> | Plus |
arm_3L | 3327860..3328183 | 98..421 | 100 | -> | Plus |
BO15870.pep Sequence
Translation from 16 to 628
> BO15870.pep
MAGRSIVHFFLGSVAIALGSYIYFTMQIDMSANGDYKNAASIYEFTVKDT
HGNDVSLEKYKGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILN
FPCNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYL
KAKQTGTLGSGIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLLAS
FLDH
BO15870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-PC | 198 | CG12013-PC | 1..198 | 1..198 | 1032 | 100 | Plus |
PHGPx-PD | 238 | CG12013-PD | 68..238 | 28..198 | 897 | 100 | Plus |
PHGPx-PA | 169 | CG12013-PA | 1..169 | 30..198 | 887 | 100 | Plus |
CG15116-PA | 193 | CG15116-PA | 33..191 | 35..198 | 403 | 50.6 | Plus |