Clone Sequence Records
BO15871.3prime Sequence
206 bp (206 high quality bases) assembled on 2006-06-02
> BO15871.3prime
ATGGTCTAGAAAGCTTGCTTTTCTGCACAACGCGAAACGATGACGAAGTG
TTGTGGTGGGTGGTGGCGGTAATGGTAATGATGGTGGTGGTGCGCTGGTT
GTGTGCCTTCTGTTGTTGTTTTCCTGTTCTCCGCCGTCGCTGGTGGGGGT
TGGTTTTCTTTTCTTTGCCTCCTTTCCCCTGGTCGCACTCATGTCGACTG
ATAACT
BO15871.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:41:32 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RL | 2247 | CG6930-RL | 341..514 | 192..19 | 855 | 99.4 | Minus |
l(3)neo38-RD | 4963 | CG6930-RD | 881..1054 | 192..19 | 855 | 99.4 | Minus |
l(3)neo38-RC | 2247 | CG6930-RC | 341..514 | 192..19 | 855 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11777839..11778012 | 19..192 | 855 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:11:08 has no hits.
BO15871.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:33 Download gff for
BO15871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31364-PA | 1..177 | 15..192 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:02:20 Download gff for
BO15871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RC | 336..519 | 11..199 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:26 Download gff for
BO15871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RC | 336..519 | 11..199 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:26 Download gff for
BO15871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11777834..11778017 | 11..199 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:02:20 Download gff for
BO15871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7603556..7603739 | 11..199 | 95 | | Plus |
BO15871.5prime Sequence
206 bp (206 high quality bases) assembled on 2006-05-30
> BO15871.5prime
GAAGTTATCAGTCGACATGAGTGCGACCAGGGGAAAGGAGGCAAAGAAAA
GAAAACCAACCCCCACCAGCGACGGCGGAGAACAGGAAAACAACAACAGA
AGGCACACAACCAGCGCACCACCACCATCATTACCATTACCGCCACCACC
CACCACAACACTTCGTCATCGTTTCGCGTTGTGCAGAAAAGCAAGCTTTC
TAGACC
BO15871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:41:33 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RL | 2247 | CG6930-RL | 341..514 | 17..190 | 855 | 99.4 | Plus |
l(3)neo38-RD | 4963 | CG6930-RD | 881..1054 | 17..190 | 855 | 99.4 | Plus |
l(3)neo38-RC | 2247 | CG6930-RC | 341..514 | 17..190 | 855 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11777839..11778012 | 190..17 | 855 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:12:11 has no hits.
BO15871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:34 Download gff for
BO15871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31364-PA | 1..177 | 17..194 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:10 Download gff for
BO15871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RC | 336..519 | 10..198 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:03 Download gff for
BO15871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RC | 336..519 | 10..198 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:03 Download gff for
BO15871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11777834..11778017 | 10..198 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:10 Download gff for
BO15871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7603556..7603739 | 10..198 | 95 | | Minus |
BO15871.complete Sequence
208 bp assembled on 2006-12-18
> BO15871.complete
GAAGTTATCAGTCGACATGAGTGCGACCAGGGGAAAGGAGGCAAAGAAAA
GAAAACCAACCCCCACCAGCGACGGCGGAGAACAGGAAAACAACAACAGA
AGGCACACAACCAGCGCACCACCACCATCATTACCATTACCGCCACCACC
CACCACAACACTTCGTCATCGTTTCGCGTTGTGCAGAAAAGCAAGCTTTC
TAGACCAT
BO15871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 08:45:21 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RL | 2247 | CG6930-RL | 341..514 | 17..190 | 855 | 99.4 | Plus |
l(3)neo38-RD | 4963 | CG6930-RD | 881..1054 | 17..190 | 855 | 99.4 | Plus |
l(3)neo38-RC | 2247 | CG6930-RC | 341..514 | 17..190 | 855 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11777839..11778012 | 190..17 | 855 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:45:20 has no hits.
BO15871.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 22:57:01 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:35 Download gff for
BO15871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RB | 728..911 | 10..198 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:39 Download gff for
BO15871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RC | 341..510 | 17..186 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:01 Download gff for
BO15871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RB | 728..911 | 10..198 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:52 Download gff for
BO15871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RC | 341..510 | 17..186 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:52 Download gff for
BO15871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11777843..11778012 | 17..186 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:39 Download gff for
BO15871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7603565..7603734 | 17..186 | 99 | | Minus |
BO15871.pep Sequence
Translation from 16 to 208
> BO15871.pep
MSATRGKEAKKRKPTPTSDGGEQENNNRRHTTSAPPPSLPLPPPPTTTLR
HRFALCRKASFLDH
Sequence BO15871.pep has no blast hits.