Clone Sequence Records
BO15873.3prime Sequence
650 bp (650 high quality bases) assembled on 2006-06-02
> BO15873.3prime
ATGGTCTAGAAAGCTTGCTAGGTATTTGGGACTTGAGTTCGAACTGTTTT
CCTGTGCTATTAGGTATAAGCAATAGAGGGACGAGATGCCCAGCCCAATA
GCTCCACCAAAAGCACACGTCCTAAGGCCAGCTGTTGACTTGTATAATAG
TCCTGTGGCAGAGCCCGCAATTACTGTGTTTATATGATCATCTTCTCCGC
GGAAAAACTGCAGCAAAACTCCACAAGCCGAATACAGCACCGTCAATGTA
CCTAATGTGTTAGCTGTGCCGGAACCTTGCTTCATAATGTGATTAAGTAA
CTGTGTTCGACGAACTTTTCCCTTCTGCTCGAGTGCTTTTGTGACTTTTA
AACCATTATAAACACCTGCTAGGCCGCCAATTCCACCGCCAATCATTACC
GAAGTGCCTATCTGAGAGAAGGCCAACTCGAAGCGTCCACGCTGCTTGTT
GGCCCCTTCGGGAAAAATGAACTCTGGCTGTGCTTGCTGCAGATATCGCG
AATCATAGTTGAGGTACGGCGAGACCGGAGTTCTACTAAAAGAACTCGTA
GTGGTAGTGTAGTGGGGTTTTGATGCTTCCTCATGGGTTGCAGCGTGCCC
ATCAGAATATGGTGTTCTTGAAAAATTGTCACTCATGTCGACTGATAACT
BO15873.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:41:35 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40042-RA | 893 | CG40042-RA | 199..816 | 636..19 | 3090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23312946..23313230 | 300..584 | 1425 | 100 | Plus |
2L | 23513712 | 2L | 23312719..23312888 | 132..301 | 850 | 100 | Plus |
2L | 23513712 | 2L | 23312542..23312658 | 19..135 | 585 | 100 | Plus |
2L | 23513712 | 2L | 23313329..23313380 | 585..636 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:38:09 has no hits.
BO15873.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:51:47 Download gff for
BO15873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40042-RA | 193..816 | 19..641 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:24 Download gff for
BO15873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40042-RA | 193..816 | 19..641 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:24 Download gff for
BO15873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23312542..23312654 | 19..131 | 100 | <- | Plus |
2L | 23312719..23312888 | 132..301 | 100 | <- | Plus |
2L | 23312948..23313230 | 302..584 | 100 | <- | Plus |
2L | 23313329..23313386 | 585..641 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:51:47 Download gff for
BO15873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2LHet | 168057..168169 | 19..131 | 100 | <- | Plus |
2LHet | 168234..168403 | 132..301 | 100 | <- | Plus |
2LHet | 168463..168745 | 302..584 | 100 | <- | Plus |
2LHet | 168844..168901 | 585..641 | 96 | | Plus |
BO15873.5prime Sequence
650 bp (650 high quality bases) assembled on 2006-05-30
> BO15873.5prime
GAAGTTATCAGTCGACATGAGTGACAATTTTTCAAGAACACCATATTCTG
ATGGGCACGCTGCAACCCATGAGGAAGCATCAAAACCCCACTACACTACC
ACTACGAGTTCTTTTAGTAGAACTCCGGTCTCGCCGTACCTCAACTATGA
TTCGCGATATCTGCAGCAAGCACAGCCAGAGTTCATTTTTCCCGAAGGGG
CCAACAAGCAGCGTGGACGCTTCGAGTTGGCCTTCTCTCAGATAGGCACT
TCGGTAATGATTGGCGGTGGAATTGGCGGCCTAGCAGGTGTTTATAATGG
TTTAAAAGTCACAAAAGCACTCGAGCAGAAGGGAAAAGTTCGTCGAACAC
AGTTACTTAATCACATTATGAAGCAAGGTTCCGGCACAGCTAACACATTA
GGTACATTGACGGTGCTGTATTCGGCTTGTGGAGTTTTGCTGCAGTTTTT
CCGCGGAGAAGATGATCATATAAACACAGTAATTGCGGGCTCTGCCACAG
GACTATTATACAAGTCAACAGCTGGCCTTAGGACGTGTGCTTTTGGTGGA
GCTATTGGGCTGGGCATCTCGTCCCTCTATTGCTTATACCTAATAGCACA
GGAAAACAGTTCGAACTCAAGTCCCAAATACCTAGCAAGCTTTCTAGACC
BO15873.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:41:35 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40042-RA | 893 | CG40042-RA | 199..816 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23312946..23313230 | 353..69 | 1425 | 100 | Minus |
2L | 23513712 | 2L | 23312719..23312888 | 521..352 | 850 | 100 | Minus |
2L | 23513712 | 2L | 23312542..23312658 | 634..518 | 585 | 100 | Minus |
2L | 23513712 | 2L | 23313329..23313380 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 07:29:37 has no hits.
BO15873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:43:38 Download gff for
BO15873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40042-RA | 193..816 | 12..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:12:58 Download gff for
BO15873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40042-RA | 193..816 | 12..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:12:58 Download gff for
BO15873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23312542..23312654 | 522..634 | 100 | <- | Minus |
2L | 23312719..23312888 | 352..521 | 100 | <- | Minus |
2L | 23312948..23313230 | 69..351 | 100 | <- | Minus |
2L | 23313329..23313386 | 12..68 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:43:38 Download gff for
BO15873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2LHet | 168057..168169 | 522..634 | 100 | <- | Minus |
2LHet | 168234..168403 | 352..521 | 100 | <- | Minus |
2LHet | 168463..168745 | 69..351 | 100 | <- | Minus |
2LHet | 168844..168901 | 12..68 | 96 | | Minus |
BO15873.complete Sequence
652 bp (652 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633614
> BO15873.complete
GAAGTTATCAGTCGACATGAGTGACAATTTTTCAAGAACACCATATTCTG
ATGGGCACGCTGCAACCCATGAGGAAGCATCAAAACCCCACTACACTACC
ACTACGAGTTCTTTTAGTAGAACTCCGGTCTCGCCGTACCTCAACTATGA
TTCGCGATATCTGCAGCAAGCACAGCCAGAGTTCATTTTTCCCGAAGGGG
CCAACAAGCAGCGTGGACGCTTCGAGTTGGCCTTCTCTCAGATAGGCACT
TCGGTAATGATTGGCGGTGGAATTGGCGGCCTAGCAGGTGTTTATAATGG
TTTAAAAGTCACAAAAGCACTCGAGCAGAAGGGAAAAGTTCGTCGAACAC
AGTTACTTAATCACATTATGAAGCAAGGTTCCGGCACAGCTAACACATTA
GGTACATTGACGGTGCTGTATTCGGCTTGTGGAGTTTTGCTGCAGTTTTT
CCGCGGAGAAGATGATCATATAAACACAGTAATTGCGGGCTCTGCCACAG
GACTATTATACAAGTCAACAGCTGGCCTTAGGACGTGTGCTTTTGGTGGA
GCTATTGGGCTGGGCATCTCGTCCCTCTATTGCTTATACCTAATAGCACA
GGAAAACAGTTCGAACTCAAGTCCCAAATACCTAGCAAGCTTTCTAGACC
AT
BO15873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40042-RA | 621 | CG40042-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40042-RA | 893 | CG40042-RA | 199..816 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23312946..23313230 | 353..69 | 1425 | 100 | Minus |
2L | 23513712 | 2L | 23312719..23312888 | 521..352 | 850 | 100 | Minus |
2L | 23513712 | 2L | 23312542..23312658 | 634..518 | 585 | 100 | Minus |
2L | 23513712 | 2L | 23313329..23313380 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:37:55 has no hits.
BO15873.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:20 Download gff for
BO15873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40042-RA | 1..621 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:46 Download gff for
BO15873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40042-RA | 220..843 | 12..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:36 Download gff for
BO15873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40042-RA | 199..816 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:20 Download gff for
BO15873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40042-RA | 220..843 | 12..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:19 Download gff for
BO15873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40042-RA | 199..816 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:19 Download gff for
BO15873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23312540..23312654 | 522..636 | 98 | <- | Minus |
2L | 23312719..23312888 | 352..521 | 100 | <- | Minus |
2L | 23312948..23313230 | 69..351 | 100 | <- | Minus |
2L | 23313329..23313380 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:36 Download gff for
BO15873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2LHet | 168055..168169 | 522..636 | 98 | <- | Minus |
2LHet | 168234..168403 | 352..521 | 100 | <- | Minus |
2LHet | 168463..168745 | 69..351 | 100 | <- | Minus |
2LHet | 168844..168895 | 17..68 | 100 | | Minus |
BO15873.pep Sequence
Translation from 16 to 652
> BO15873.pep
MSDNFSRTPYSDGHAATHEEASKPHYTTTTSSFSRTPVSPYLNYDSRYLQ
QAQPEFIFPEGANKQRGRFELAFSQIGTSVMIGGGIGGLAGVYNGLKVTK
ALEQKGKVRRTQLLNHIMKQGSGTANTLGTLTVLYSACGVLLQFFRGEDD
HINTVIAGSATGLLYKSTAGLRTCAFGGAIGLGISSLYCLYLIAQENSSN
SSPKYLASFLDH
BO15873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40042-PA | 206 | CG40042-PA | 1..206 | 1..206 | 1064 | 100 | Plus |