Clone BO15873 Report

Search the DGRC for BO15873

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG40042-RA
Protein status:BO15873.pep:
Sequenced Size:652

Clone Sequence Records

BO15873.3prime Sequence

650 bp (650 high quality bases) assembled on 2006-06-02

> BO15873.3prime
ATGGTCTAGAAAGCTTGCTAGGTATTTGGGACTTGAGTTCGAACTGTTTT
CCTGTGCTATTAGGTATAAGCAATAGAGGGACGAGATGCCCAGCCCAATA
GCTCCACCAAAAGCACACGTCCTAAGGCCAGCTGTTGACTTGTATAATAG
TCCTGTGGCAGAGCCCGCAATTACTGTGTTTATATGATCATCTTCTCCGC
GGAAAAACTGCAGCAAAACTCCACAAGCCGAATACAGCACCGTCAATGTA
CCTAATGTGTTAGCTGTGCCGGAACCTTGCTTCATAATGTGATTAAGTAA
CTGTGTTCGACGAACTTTTCCCTTCTGCTCGAGTGCTTTTGTGACTTTTA
AACCATTATAAACACCTGCTAGGCCGCCAATTCCACCGCCAATCATTACC
GAAGTGCCTATCTGAGAGAAGGCCAACTCGAAGCGTCCACGCTGCTTGTT
GGCCCCTTCGGGAAAAATGAACTCTGGCTGTGCTTGCTGCAGATATCGCG
AATCATAGTTGAGGTACGGCGAGACCGGAGTTCTACTAAAAGAACTCGTA
GTGGTAGTGTAGTGGGGTTTTGATGCTTCCTCATGGGTTGCAGCGTGCCC
ATCAGAATATGGTGTTCTTGAAAAATTGTCACTCATGTCGACTGATAACT

BO15873.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:41:35 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-RA 893 CG40042-RA 199..816 636..19 3090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23312946..23313230 300..584 1425 100 Plus
2L 23513712 2L 23312719..23312888 132..301 850 100 Plus
2L 23513712 2L 23312542..23312658 19..135 585 100 Plus
2L 23513712 2L 23313329..23313380 585..636 260 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:38:09 has no hits.

BO15873.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:51:47 Download gff for BO15873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 193..816 19..641 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:24 Download gff for BO15873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 193..816 19..641 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:24 Download gff for BO15873.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 23312542..23312654 19..131 100 <- Plus
2L 23312719..23312888 132..301 100 <- Plus
2L 23312948..23313230 302..584 100 <- Plus
2L 23313329..23313386 585..641 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:51:47 Download gff for BO15873.3prime
Subject Subject Range Query Range Percent Splice Strand
2LHet 168057..168169 19..131 100 <- Plus
2LHet 168234..168403 132..301 100 <- Plus
2LHet 168463..168745 302..584 100 <- Plus
2LHet 168844..168901 585..641 96   Plus

BO15873.5prime Sequence

650 bp (650 high quality bases) assembled on 2006-05-30

> BO15873.5prime
GAAGTTATCAGTCGACATGAGTGACAATTTTTCAAGAACACCATATTCTG
ATGGGCACGCTGCAACCCATGAGGAAGCATCAAAACCCCACTACACTACC
ACTACGAGTTCTTTTAGTAGAACTCCGGTCTCGCCGTACCTCAACTATGA
TTCGCGATATCTGCAGCAAGCACAGCCAGAGTTCATTTTTCCCGAAGGGG
CCAACAAGCAGCGTGGACGCTTCGAGTTGGCCTTCTCTCAGATAGGCACT
TCGGTAATGATTGGCGGTGGAATTGGCGGCCTAGCAGGTGTTTATAATGG
TTTAAAAGTCACAAAAGCACTCGAGCAGAAGGGAAAAGTTCGTCGAACAC
AGTTACTTAATCACATTATGAAGCAAGGTTCCGGCACAGCTAACACATTA
GGTACATTGACGGTGCTGTATTCGGCTTGTGGAGTTTTGCTGCAGTTTTT
CCGCGGAGAAGATGATCATATAAACACAGTAATTGCGGGCTCTGCCACAG
GACTATTATACAAGTCAACAGCTGGCCTTAGGACGTGTGCTTTTGGTGGA
GCTATTGGGCTGGGCATCTCGTCCCTCTATTGCTTATACCTAATAGCACA
GGAAAACAGTTCGAACTCAAGTCCCAAATACCTAGCAAGCTTTCTAGACC

BO15873.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:41:35 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-RA 893 CG40042-RA 199..816 17..634 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23312946..23313230 353..69 1425 100 Minus
2L 23513712 2L 23312719..23312888 521..352 850 100 Minus
2L 23513712 2L 23312542..23312658 634..518 585 100 Minus
2L 23513712 2L 23313329..23313380 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-02 07:29:37 has no hits.

BO15873.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:43:38 Download gff for BO15873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 193..816 12..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:12:58 Download gff for BO15873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 193..816 12..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:12:58 Download gff for BO15873.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 23312542..23312654 522..634 100 <- Minus
2L 23312719..23312888 352..521 100 <- Minus
2L 23312948..23313230 69..351 100 <- Minus
2L 23313329..23313386 12..68 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:43:38 Download gff for BO15873.5prime
Subject Subject Range Query Range Percent Splice Strand
2LHet 168057..168169 522..634 100 <- Minus
2LHet 168234..168403 352..521 100 <- Minus
2LHet 168463..168745 69..351 100 <- Minus
2LHet 168844..168901 12..68 96   Minus

BO15873.complete Sequence

652 bp (652 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633614

> BO15873.complete
GAAGTTATCAGTCGACATGAGTGACAATTTTTCAAGAACACCATATTCTG
ATGGGCACGCTGCAACCCATGAGGAAGCATCAAAACCCCACTACACTACC
ACTACGAGTTCTTTTAGTAGAACTCCGGTCTCGCCGTACCTCAACTATGA
TTCGCGATATCTGCAGCAAGCACAGCCAGAGTTCATTTTTCCCGAAGGGG
CCAACAAGCAGCGTGGACGCTTCGAGTTGGCCTTCTCTCAGATAGGCACT
TCGGTAATGATTGGCGGTGGAATTGGCGGCCTAGCAGGTGTTTATAATGG
TTTAAAAGTCACAAAAGCACTCGAGCAGAAGGGAAAAGTTCGTCGAACAC
AGTTACTTAATCACATTATGAAGCAAGGTTCCGGCACAGCTAACACATTA
GGTACATTGACGGTGCTGTATTCGGCTTGTGGAGTTTTGCTGCAGTTTTT
CCGCGGAGAAGATGATCATATAAACACAGTAATTGCGGGCTCTGCCACAG
GACTATTATACAAGTCAACAGCTGGCCTTAGGACGTGTGCTTTTGGTGGA
GCTATTGGGCTGGGCATCTCGTCCCTCTATTGCTTATACCTAATAGCACA
GGAAAACAGTTCGAACTCAAGTCCCAAATACCTAGCAAGCTTTCTAGACC
AT

BO15873.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-RA 621 CG40042-PA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-RA 893 CG40042-RA 199..816 17..634 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23312946..23313230 353..69 1425 100 Minus
2L 23513712 2L 23312719..23312888 521..352 850 100 Minus
2L 23513712 2L 23312542..23312658 634..518 585 100 Minus
2L 23513712 2L 23313329..23313380 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:37:55 has no hits.

BO15873.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:20 Download gff for BO15873.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..621 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:46 Download gff for BO15873.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 220..843 12..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:36 Download gff for BO15873.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 199..816 17..636 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:20 Download gff for BO15873.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 220..843 12..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:19 Download gff for BO15873.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 199..816 17..636 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:19 Download gff for BO15873.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23312540..23312654 522..636 98 <- Minus
2L 23312719..23312888 352..521 100 <- Minus
2L 23312948..23313230 69..351 100 <- Minus
2L 23313329..23313380 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:36 Download gff for BO15873.complete
Subject Subject Range Query Range Percent Splice Strand
2LHet 168055..168169 522..636 98 <- Minus
2LHet 168234..168403 352..521 100 <- Minus
2LHet 168463..168745 69..351 100 <- Minus
2LHet 168844..168895 17..68 100   Minus

BO15873.pep Sequence

Translation from 16 to 652

> BO15873.pep
MSDNFSRTPYSDGHAATHEEASKPHYTTTTSSFSRTPVSPYLNYDSRYLQ
QAQPEFIFPEGANKQRGRFELAFSQIGTSVMIGGGIGGLAGVYNGLKVTK
ALEQKGKVRRTQLLNHIMKQGSGTANTLGTLTVLYSACGVLLQFFRGEDD
HINTVIAGSATGLLYKSTAGLRTCAFGGAIGLGISSLYCLYLIAQENSSN
SSPKYLASFLDH

BO15873.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-PA 206 CG40042-PA 1..206 1..206 1064 100 Plus