Clone Sequence Records
BO15876.3prime Sequence
815 bp (700 high quality bases) assembled on 2006-06-02
> BO15876.3prime
ATGGTCTAGAAAGCTTGCGACAACCACACTAACAGTGTTAACTGGGGGCA
AAACTGCACCCGGAATCGCGGTAGGTGCAGCGGGAGTTCCACCAGTGGAG
GCTTCTACCGTACCATTCACAGCATTCCAGCCGAGGAGCTCTCGGATGAT
GCCATCCAATTGCACGGTATCAATGCCCGCCTTCTGAAGTTCAGCCAGAA
CCTGTGTAGTTTCCACTGTAGTCAGCCAACGTTCATACATGACTCGCAAC
CCCTGTAATCTCGACCAGAACTGGGCGAAAATTCCCTGCTGCAACACCTT
GGCATCGATGTGGGCTCGGATGGCATACAGTGGAAAGTAGAGCTGAACTT
CGTTTAGAAATCCTTGCCAGCCGAAAACGGTGCCGGACCAGTAGGGAAAC
TGGTTCAATAGACTCACTTTGAGCCTCTGCTCCTCCAACTCAAAGGAACC
GCCCGAGGCCAGGAGCTGCTGGTCCGTCCACTGCAGAAAGAGAATGAGCT
CCGGCTGCGAGAGCAGACGCCAGCGGGCAGTGACTGCGGCATTGCTGTTG
ATAATCCGCACGAAGGCCTGGAACTGGGCATCGTTGATTAGGTAGCGCAC
CAAGAGCTGGTTTAATGGCTTCGACTGTATCAGACGCTGGATTTCTTCCA
GATCCTGGGATAGAGTGGGTGGTGGAGCCAAGGTAGCTGGCGGGCCCGGC
GCCAACAGACCAACAGTTGGAGGCACCAACTGAGGAGACCACAGTGCCAG
GGATCCACTGGCCCAGGGAATCAGGAGAAGCCAGTCCAGAGCGATGGCCA
TGTCAACTGATAACT
BO15876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14963-PA | 786 | CG14963-RA | 1..783 | 801..19 | 3840 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14963-RA | 932 | CG14963-RA | 5..787 | 801..19 | 3870 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3171759..3172541 | 19..801 | 3870 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:38:18 has no hits.
BO15876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:41 Download gff for
BO15876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-PA | 1..786 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:03 Download gff for
BO15876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-PA | 1..786 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:41 Download gff for
BO15876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-RA | 2..793 | 12..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:44 Download gff for
BO15876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-RA | 2..793 | 12..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:44 Download gff for
BO15876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3171753..3172546 | 12..809 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:41 Download gff for
BO15876.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3171753..3172546 | 12..809 | 98 | | Plus |
BO15876.5prime Sequence
775 bp (752 high quality bases) assembled on 2006-05-30
> BO15876.5prime
GAAGTTATCAGTCGACATGGCCATCGCTCTGGACTGGCTTCTCCTGATTA
CCCTGGCCAGTGGATCCCTGGCACTGTGGTCTCCTCAGTTGGTGCCTCCA
ACTGTTGGTCTGTTGGCGCCGGGCCCGCCAGCTACCTTGGCTCCACCACC
CACTCTATCCCAGGATCTGGAAGAAATCCAGCGTCTGATACAGTCGAAGC
CATTAAACCAGCTCTTGGTGCGCTACCTAATCAACGATGCCCAGTTCCAG
GCCTTCGTGCGGATTATCAACAGCAATGCCGCAGTCACTGCCCGCTGGCG
TCTGCTCTCGCAGCCGGAGCTCATTCTCTTTCTGCAGTGGACGGACCAGC
AGCTCCTGGCCTCGGGCGGTTCCTTTGAGTTGGAGGAGCAGAGGCTCAAA
GTGAGTCTATTGAACCAGTTTCCCTACTGGTCCGGCACCGTTTTCGGCTG
GCAAGGATTTCTAAACGAAGTTCAGCTCTACTTTCCACTGTATGCCATCC
GAGCCCACATCGATGCCAAGGTGTTGCAGCAGGGAATTTTCGCCCAGTTC
TGGTCGAGATTACAGGGGTTGCGAGTCATGTATGAACGTTGGCTGACTAC
AGTGGAAACTACACAGGTTCTGGCTGAACTTCAGAAGGCGGGCATTGATA
CCGTGCAATTGGATGGCATCATCCGAGAGCTCCTCGGCTGGAATGCTGTG
AATGGTACGGTAGAAGCCTCCACTGGTGGAACTCCCGCTGCACCTACCGC
GATTCCGGGTGCAGTTTTGCCCCCA
BO15876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14963-PA | 786 | CG14963-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14963-RA | 932 | CG14963-RA | 5..763 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3171783..3172541 | 775..17 | 3795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:53:49 has no hits.
BO15876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:42 Download gff for
BO15876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-PA | 1..758 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:05 Download gff for
BO15876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-PA | 1..758 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:40 Download gff for
BO15876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-RA | 2..762 | 14..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:05 Download gff for
BO15876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-RA | 2..762 | 14..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:05 Download gff for
BO15876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3171784..3172546 | 9..774 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:40 Download gff for
BO15876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3171784..3172546 | 9..774 | 99 | | Minus |
BO15876.complete Sequence
817 bp (817 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633615
> BO15876.complete
GAAGTTATCAGTCGACATGGCCATCGCTCTGGACTGGCTTCTCCTGATTA
CCCTGGCCAGTGGATCCCTGGCACTGTGGTCTCCTCAGTTGGTGCCTCCA
ACTGTTGGTCTGTTGGCGCCGGGCCCGCCAGCTACCTTGGCTCCACCACC
CACTCTATCCCAGGATCTGGAAGAAATCCAGCGTCTGATACAGTCGAAGC
CATTAAACCAGCTCTTGGTGCGCTACCTAATCAACGATGCCCAGTTCCAG
GCCTTCGTGCGGATTATCAACAGCAATGCCGCAGTCACTGCCCGCTGGCG
TCTGCTCTCGCAGCCGGAGCTCATTCTCTTTCTGCAGTGGACGGACCAGC
AGCTCCTGGCCTCGGGCGGTTCCTTTGAGTTGGAGGAGCAGAGGCTCAAA
GTGAGTCTATTGAACCAGTTTCCCTACTGGTCCGGCACCGTTTTCGGCTG
GCAAGGATTTCTAAACGAAGTTCAGCTCTACTTTCCACTGTATGCCATCC
GAGCCCACATCGATGCCAAGGTGTTGCAGCAGGGAATTTTCGCCCAGTTC
TGGTCGAGATTACAGGGGTTGCGAGTCATGTATGAACGTTGGCTGACTAC
AGTGGAAACTACACAGGTTCTGGCTGAACTTCAGAAGGCGGGCATTGATA
CCGTGCAATTGGATGGCATCATCCGAGAGCTCCTCGGCTGGAATGCTGTG
AATGGTACGGTAGAAGCCTCCACTGGTGGAACTCCCGCTGCACCTACCGC
GATTCCGGGTGCAGTTTTGCCCCCAGTTAACACTGTTAGTGTGGTTGTCG
CAAGCTTTCTAGACCAT
BO15876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14963-RA | 786 | CG14963-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14963-RA | 932 | CG14963-RA | 5..787 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3171759..3172541 | 799..17 | 3915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:16:06 has no hits.
BO15876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:05 Download gff for
BO15876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-RA | 1..786 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:46 Download gff for
BO15876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-RA | 2..793 | 14..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:15 Download gff for
BO15876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-RA | 5..787 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:05 Download gff for
BO15876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-RA | 2..793 | 14..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:27 Download gff for
BO15876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14963-RA | 5..787 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:27 Download gff for
BO15876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3171757..3172541 | 17..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:15 Download gff for
BO15876.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3171757..3172541 | 17..801 | 99 | | Minus |
BO15876.pep Sequence
Translation from 16 to 817
> BO15876.pep
MAIALDWLLLITLASGSLALWSPQLVPPTVGLLAPGPPATLAPPPTLSQD
LEEIQRLIQSKPLNQLLVRYLINDAQFQAFVRIINSNAAVTARWRLLSQP
ELILFLQWTDQQLLASGGSFELEEQRLKVSLLNQFPYWSGTVFGWQGFLN
EVQLYFPLYAIRAHIDAKVLQQGIFAQFWSRLQGLRVMYERWLTTVETTQ
VLAELQKAGIDTVQLDGIIRELLGWNAVNGTVEASTGGTPAAPTAIPGAV
LPPVNTVSVVVASFLDH
BO15876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14963-PA | 261 | CG14963-PA | 1..261 | 1..261 | 1334 | 100 | Plus |
| CG13905-PB | 238 | CG13905-PB | 21..226 | 29..228 | 310 | 35.9 | Plus |
