Clone BO15877 Report

Search the DGRC for BO15877

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG4259-RA
Protein status:BO15877.pep: validated full length
Sequenced Size:844

Clone Sequence Records

BO15877.3prime Sequence

842 bp (760 high quality bases) assembled on 2006-06-02

> BO15877.3prime
ATGGTCTAGAAAGCTTGCACTTCTGGGACGAAAGTTCGCTTCAAGTCTTA
AATGGTAGTCAATCCAAGGGAGCAGACCAGCTACATTCGTAAAGACGATG
AATGTATTTTCGACAGGCTTTTGACTTAACCAGTTCACAATGCCCACCTG
TGCGTACTTATATGGATATGTAAGTATCCGACAAACCAGAGGAGCCCCAC
CGTCTCCACTGCAATCTATGCCTTCCAGACCTTTCCCACAGATTTGCTGG
ATGGGCAGCTTTCGAGAGCTACACATACCCATGCTCAAAAGATCGACCTG
GACCGTCTTGAGAACGGTGGGGTAGTCCGTCGAGTTCAAATATACTTTTC
CCCAGCCGTTGAAGAAGCAGGATCCTTTTTGAATACCAGCTTCTTGTAGG
TACAATGGGATTAAATTAATGTTGGCTGTCATCTCAAATGCGGATACCAG
AATGAGTAACGCCATGTTGTTTTCGGCATTGAATCTGTTGAACTGTTCAT
GGGAGACTATATTCAGCACCTCGAGATCCACGTGCTGCTGGTCAGCCGTA
GTCGAGGTATCCCATTCGCCAGCTCGCACCACCAGATCATACTTGGTTGT
TCCATTCAGAATATGAGCGGCAGTAAGGACCACATTTGGATTAATCAGAG
ATCCCACTCCTATATAGCGAAACAGCCAATCCCTCTGGTCGAGCACAGAA
ACCACCCAGGGAAATGTCGCTCTGGGATTACTGCCATATGTTTCACGTCG
TATCTGATTGTAGTTTAAGTATTGACTATTCACAAGGCTGATTATCAGTG
TCGTGAGAAACGCAAAGTATAGCGACATGTCGACTGATAACT

BO15877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-PA 813 CG4259-RA 1..810 828..19 4025 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-RB 1867 CG4259-RB 31..840 828..19 4035 99.9 Minus
CG4259-RA 964 CG4259-RA 31..840 828..19 4035 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2128336..2129073 19..756 3690 100 Plus
2L 23513712 2L 2129133..2129207 754..828 360 98.7 Plus
Blast to na_te.dros performed on 2015-02-10 15:49:43 has no hits.

BO15877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:43 Download gff for BO15877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-PA 1..813 16..828 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:06 Download gff for BO15877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-PA 1..813 16..828 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:57:05 Download gff for BO15877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 29..848 12..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:26 Download gff for BO15877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 29..848 12..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:26 Download gff for BO15877.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2128328..2129070 12..753 99 <- Plus
2L 2129133..2129209 754..831 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:57:05 Download gff for BO15877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2128328..2129070 12..753 99 <- Plus
arm_2L 2129133..2129209 754..831 97   Plus

BO15877.5prime Sequence

818 bp (792 high quality bases) assembled on 2006-05-30

> BO15877.5prime
GAAGTTATCAGTCGACATGTCGCTATACTTTGCGTTTCTCACGACACTGA
TAATCAGCCTTGTGAATAGTCAATACTTTAACTACAATCAGATACGACGT
GAAACATATGGCAGTAATCCCAGAGCGACATTTCCCTGGGTGGTTTCTGT
GCTCGACCAGAGGGATTGGCTGTTTCGCTATATAGGAGTGGGATCTCTGA
TTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAACAACC
AAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGC
TGACCAGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAAC
AGTTCAACAGATTCAATGCCGAAAACAACATGGCGTTACTCATTCTGGTA
TCCGCATTTGAGATGACAGCCAACATTAATTTAATCCCATTGTACCTACA
AGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCAACGGCTGGGGAAAAG
TATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCCAGGTC
GATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCA
AATCTGTGGGAAAGGTCTGGAAGGCATAGATTGCAGTGGAGACGGTGGGG
CTCCTCTGGTTTGTCGGATACTTACATATCCATATAAGTACGCACAGGTG
GGCATTGTGAACTGGTTAAGTCAAAAGCCTGTCGAAAATACATTCATCGT
CTTTACGAATGTAGCTGGTCTGCTCCCTTGGATTGACTACCATTTAAGAC
TTGAAGCGAACTTTCGTC

BO15877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-PA 813 CG4259-RA 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-RB 1867 CG4259-RB 31..832 17..818 4010 100 Plus
CG4259-RA 964 CG4259-RA 31..832 17..818 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2128344..2129073 818..89 3650 100 Minus
2L 23513712 2L 2129133..2129207 91..17 375 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:34:15 has no hits.

BO15877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:44 Download gff for BO15877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:07 Download gff for BO15877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:49 Download gff for BO15877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 29..832 14..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:55 Download gff for BO15877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 29..832 14..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:55 Download gff for BO15877.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2128344..2129070 92..818 100 <- Minus
2L 2129133..2129209 14..91 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:49 Download gff for BO15877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2128344..2129070 92..818 100 <- Minus
arm_2L 2129133..2129209 14..91 98   Minus

BO15877.complete Sequence

844 bp (844 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633616

> BO15877.complete
GAAGTTATCAGTCGACATGTCGCTATACTTTGCGTTTCTCACGACACTGA
TAATCAGCCTTGTGAATAGTCAATACTTTAACTACAATCAGATACGACGT
GAAACATATGGCAGTAATCCCAGAGCGACATTTCCCTGGGTGGTTTCTGT
GCTCGACCAGAGGGATTGGCTGTTTCGCTATATAGGAGTGGGATCTCTGA
TTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAACAACC
AAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGC
TGACCAGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAAC
AGTTCAACAGATTCAATGCCGAAAACAACATGGCGTTACTCATTCTGGTA
TCCGCATTTGAGATGACAGCCAACATTAATTTAATCCCATTGTACCTACA
AGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCAACGGCTGGGGAAAAG
TATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCCAGGTC
GATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCA
AATCTGTGGGAAAGGTCTGGAAGGCATAGATTGCAGTGGAGACGGTGGGG
CTCCTCTGGTTTGTCGGATACTTACATATCCATATAAGTACGCACAGGTG
GGCATTGTGAACTGGTTAAGTCAAAAGCCTGTCGAAAATACATTCATCGT
CTTTACGAATGTAGCTGGTCTGCTCCCTTGGATTGACTACCATTTAAGAC
TTGAAGCGAACTTTCGTCCCAGAAGTGCAAGCTTTCTAGACCAT

BO15877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-RB 813 CG4259-PB 1..810 17..826 4050 100 Plus
CG4259-RA 813 CG4259-PA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-RB 1867 CG4259-RB 31..840 17..826 4050 100 Plus
CG4259-RA 964 CG4259-RA 31..840 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2128336..2129073 826..89 3690 100 Minus
2L 23513712 2L 2129133..2129207 91..17 375 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:48:20 has no hits.

BO15877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:53 Download gff for BO15877.complete
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:30 Download gff for BO15877.complete
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 1..822 13..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:39 Download gff for BO15877.complete
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 31..840 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:53 Download gff for BO15877.complete
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 1..822 13..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:59 Download gff for BO15877.complete
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 31..840 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:59 Download gff for BO15877.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2128333..2129070 92..828 99 <- Minus
2L 2129133..2129207 17..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:39 Download gff for BO15877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2128333..2129070 92..828 99 <- Minus
arm_2L 2129133..2129207 17..91 100   Minus

BO15877.pep Sequence

Translation from 16 to 844

> BO15877.pep
MSLYFAFLTTLIISLVNSQYFNYNQIRRETYGSNPRATFPWVVSVLDQRD
WLFRYIGVGSLINPNVVLTAAHILNGTTKYDLVVRAGEWDTSTTADQQHV
DLEVLNIVSHEQFNRFNAENNMALLILVSAFEMTANINLIPLYLQEAGIQ
KGSCFFNGWGKVYLNSTDYPTVLKTVQVDLLSMGMCSSRKLPIQQICGKG
LEGIDCSGDGGAPLVCRILTYPYKYAQVGIVNWLSQKPVENTFIVFTNVA
GLLPWIDYHLRLEANFRPRSASFLDH

BO15877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-PB 270 CG4259-PB 1..270 1..270 1424 100 Plus
CG4259-PA 270 CG4259-PA 1..270 1..270 1424 100 Plus
CG14990-PA 322 CG14990-PA 72..315 39..274 383 37.1 Plus
CG3117-PB 347 CG3117-PB 77..332 14..260 344 34.2 Plus
CG18478-PA 294 CG18478-PA 46..280 30..256 339 34.7 Plus