Clone Sequence Records
BO15877.3prime Sequence
842 bp (760 high quality bases) assembled on 2006-06-02
> BO15877.3prime
ATGGTCTAGAAAGCTTGCACTTCTGGGACGAAAGTTCGCTTCAAGTCTTA
AATGGTAGTCAATCCAAGGGAGCAGACCAGCTACATTCGTAAAGACGATG
AATGTATTTTCGACAGGCTTTTGACTTAACCAGTTCACAATGCCCACCTG
TGCGTACTTATATGGATATGTAAGTATCCGACAAACCAGAGGAGCCCCAC
CGTCTCCACTGCAATCTATGCCTTCCAGACCTTTCCCACAGATTTGCTGG
ATGGGCAGCTTTCGAGAGCTACACATACCCATGCTCAAAAGATCGACCTG
GACCGTCTTGAGAACGGTGGGGTAGTCCGTCGAGTTCAAATATACTTTTC
CCCAGCCGTTGAAGAAGCAGGATCCTTTTTGAATACCAGCTTCTTGTAGG
TACAATGGGATTAAATTAATGTTGGCTGTCATCTCAAATGCGGATACCAG
AATGAGTAACGCCATGTTGTTTTCGGCATTGAATCTGTTGAACTGTTCAT
GGGAGACTATATTCAGCACCTCGAGATCCACGTGCTGCTGGTCAGCCGTA
GTCGAGGTATCCCATTCGCCAGCTCGCACCACCAGATCATACTTGGTTGT
TCCATTCAGAATATGAGCGGCAGTAAGGACCACATTTGGATTAATCAGAG
ATCCCACTCCTATATAGCGAAACAGCCAATCCCTCTGGTCGAGCACAGAA
ACCACCCAGGGAAATGTCGCTCTGGGATTACTGCCATATGTTTCACGTCG
TATCTGATTGTAGTTTAAGTATTGACTATTCACAAGGCTGATTATCAGTG
TCGTGAGAAACGCAAAGTATAGCGACATGTCGACTGATAACT
BO15877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-PA | 813 | CG4259-RA | 1..810 | 828..19 | 4025 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-RB | 1867 | CG4259-RB | 31..840 | 828..19 | 4035 | 99.9 | Minus |
CG4259-RA | 964 | CG4259-RA | 31..840 | 828..19 | 4035 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2128336..2129073 | 19..756 | 3690 | 100 | Plus |
2L | 23513712 | 2L | 2129133..2129207 | 754..828 | 360 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:49:43 has no hits.
BO15877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:43 Download gff for
BO15877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-PA | 1..813 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:06 Download gff for
BO15877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-PA | 1..813 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:57:05 Download gff for
BO15877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 29..848 | 12..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:26 Download gff for
BO15877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 29..848 | 12..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:26 Download gff for
BO15877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2128328..2129070 | 12..753 | 99 | <- | Plus |
2L | 2129133..2129209 | 754..831 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:57:05 Download gff for
BO15877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2128328..2129070 | 12..753 | 99 | <- | Plus |
arm_2L | 2129133..2129209 | 754..831 | 97 | | Plus |
BO15877.5prime Sequence
818 bp (792 high quality bases) assembled on 2006-05-30
> BO15877.5prime
GAAGTTATCAGTCGACATGTCGCTATACTTTGCGTTTCTCACGACACTGA
TAATCAGCCTTGTGAATAGTCAATACTTTAACTACAATCAGATACGACGT
GAAACATATGGCAGTAATCCCAGAGCGACATTTCCCTGGGTGGTTTCTGT
GCTCGACCAGAGGGATTGGCTGTTTCGCTATATAGGAGTGGGATCTCTGA
TTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAACAACC
AAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGC
TGACCAGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAAC
AGTTCAACAGATTCAATGCCGAAAACAACATGGCGTTACTCATTCTGGTA
TCCGCATTTGAGATGACAGCCAACATTAATTTAATCCCATTGTACCTACA
AGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCAACGGCTGGGGAAAAG
TATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCCAGGTC
GATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCA
AATCTGTGGGAAAGGTCTGGAAGGCATAGATTGCAGTGGAGACGGTGGGG
CTCCTCTGGTTTGTCGGATACTTACATATCCATATAAGTACGCACAGGTG
GGCATTGTGAACTGGTTAAGTCAAAAGCCTGTCGAAAATACATTCATCGT
CTTTACGAATGTAGCTGGTCTGCTCCCTTGGATTGACTACCATTTAAGAC
TTGAAGCGAACTTTCGTC
BO15877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-PA | 813 | CG4259-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-RB | 1867 | CG4259-RB | 31..832 | 17..818 | 4010 | 100 | Plus |
CG4259-RA | 964 | CG4259-RA | 31..832 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2128344..2129073 | 818..89 | 3650 | 100 | Minus |
2L | 23513712 | 2L | 2129133..2129207 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:34:15 has no hits.
BO15877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:44 Download gff for
BO15877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:07 Download gff for
BO15877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:49 Download gff for
BO15877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 29..832 | 14..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:55 Download gff for
BO15877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 29..832 | 14..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:55 Download gff for
BO15877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2128344..2129070 | 92..818 | 100 | <- | Minus |
2L | 2129133..2129209 | 14..91 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:49 Download gff for
BO15877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2128344..2129070 | 92..818 | 100 | <- | Minus |
arm_2L | 2129133..2129209 | 14..91 | 98 | | Minus |
BO15877.complete Sequence
844 bp (844 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633616
> BO15877.complete
GAAGTTATCAGTCGACATGTCGCTATACTTTGCGTTTCTCACGACACTGA
TAATCAGCCTTGTGAATAGTCAATACTTTAACTACAATCAGATACGACGT
GAAACATATGGCAGTAATCCCAGAGCGACATTTCCCTGGGTGGTTTCTGT
GCTCGACCAGAGGGATTGGCTGTTTCGCTATATAGGAGTGGGATCTCTGA
TTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAACAACC
AAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGC
TGACCAGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAAC
AGTTCAACAGATTCAATGCCGAAAACAACATGGCGTTACTCATTCTGGTA
TCCGCATTTGAGATGACAGCCAACATTAATTTAATCCCATTGTACCTACA
AGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCAACGGCTGGGGAAAAG
TATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCCAGGTC
GATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCA
AATCTGTGGGAAAGGTCTGGAAGGCATAGATTGCAGTGGAGACGGTGGGG
CTCCTCTGGTTTGTCGGATACTTACATATCCATATAAGTACGCACAGGTG
GGCATTGTGAACTGGTTAAGTCAAAAGCCTGTCGAAAATACATTCATCGT
CTTTACGAATGTAGCTGGTCTGCTCCCTTGGATTGACTACCATTTAAGAC
TTGAAGCGAACTTTCGTCCCAGAAGTGCAAGCTTTCTAGACCAT
BO15877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-RB | 813 | CG4259-PB | 1..810 | 17..826 | 4050 | 100 | Plus |
CG4259-RA | 813 | CG4259-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-RB | 1867 | CG4259-RB | 31..840 | 17..826 | 4050 | 100 | Plus |
CG4259-RA | 964 | CG4259-RA | 31..840 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2128336..2129073 | 826..89 | 3690 | 100 | Minus |
2L | 23513712 | 2L | 2129133..2129207 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:48:20 has no hits.
BO15877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:53 Download gff for
BO15877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:30 Download gff for
BO15877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 1..822 | 13..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:39 Download gff for
BO15877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 31..840 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:53 Download gff for
BO15877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 1..822 | 13..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:59 Download gff for
BO15877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 31..840 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:59 Download gff for
BO15877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2128333..2129070 | 92..828 | 99 | <- | Minus |
2L | 2129133..2129207 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:39 Download gff for
BO15877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2128333..2129070 | 92..828 | 99 | <- | Minus |
arm_2L | 2129133..2129207 | 17..91 | 100 | | Minus |
BO15877.pep Sequence
Translation from 16 to 844
> BO15877.pep
MSLYFAFLTTLIISLVNSQYFNYNQIRRETYGSNPRATFPWVVSVLDQRD
WLFRYIGVGSLINPNVVLTAAHILNGTTKYDLVVRAGEWDTSTTADQQHV
DLEVLNIVSHEQFNRFNAENNMALLILVSAFEMTANINLIPLYLQEAGIQ
KGSCFFNGWGKVYLNSTDYPTVLKTVQVDLLSMGMCSSRKLPIQQICGKG
LEGIDCSGDGGAPLVCRILTYPYKYAQVGIVNWLSQKPVENTFIVFTNVA
GLLPWIDYHLRLEANFRPRSASFLDH
BO15877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-PB | 270 | CG4259-PB | 1..270 | 1..270 | 1424 | 100 | Plus |
CG4259-PA | 270 | CG4259-PA | 1..270 | 1..270 | 1424 | 100 | Plus |
CG14990-PA | 322 | CG14990-PA | 72..315 | 39..274 | 383 | 37.1 | Plus |
CG3117-PB | 347 | CG3117-PB | 77..332 | 14..260 | 344 | 34.2 | Plus |
CG18478-PA | 294 | CG18478-PA | 46..280 | 30..256 | 339 | 34.7 | Plus |