Clone BO15888 Report

Search the DGRC for BO15888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG10336-RA
Protein status:BO15888.pep: validated not full length
Sequenced Size:955

Clone Sequence Records

BO15888.3prime Sequence

844 bp (771 high quality bases) assembled on 2006-06-02

> BO15888.3prime
ATGGTCTAGAAAGCTTGCACTTTTACTTCCGCTCTCCTGCTGCTGCTTGG
CCTTAAGTCGCTCCTGCGCCAGCCTGCGGTTTTCCGCAATCCTGGCCATC
TGTTCGTTGGATAATTTCTTAGCCGCCGGCGTGGGAGGCTGTGAGGGAGG
CAGCGGCTGACCATAGTCGCTGATGTCCATCGATGCCAACGGAGCTCCAT
TCCGATCGAAGGCCGGAGCCACAGAAGCTCCACTTCTGTCGAAGGTCGCA
TTTACACCGGAGTACGGCGTGGACATTACAGCATTGCCGCGGGAGAATGA
CGGAGTAGCCAGCGTGCTGTTACTGGAAGCAGTAGACATTTTCCACTGCT
GCGGGCTGGGAGGCGCCAGCCTGGACATGGCAATCTGTTCACCTAGCAGG
GCGTCGAACTCATCAAAGGGTTCATCGCCGGCACCTTCCTGTTGCTCATC
CTGCGCCTCCTCCAGGGCCTCCGCTTCGTGGGCGCGCATCTGCTCCAGCT
GACCGAGTCGATATCGCGCCATGTGCACTTGGAGGGGTTTCTTCTTGCCC
AGCCGTTCGATATTGTTAAGCACATCGTCAAAGGTGTAGGTGGGATACAT
ACGATGGCCCCAGTGCTGCAGGCGGCGAAGCACCTCGTCGAGATCGGTTT
TCTCGTAACCCTTGCCCTTGAATTTGATGTCCTTAAAATAATCTTCGATG
GTCTGGATGCCACGAGGACCTCGAAGTGTTTCCACAGTGAGTCGCGGTCG
GGGATTTCTCACAGCTCGCTTCTTANGCTCCACTATCTGGGCATCCTGGC
TACCAGGTTCTACGCCGTTGTCCTCGTCGTCCGCAAACAGCTTT

BO15888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10336-PB 963 CG10336-RB 135..960 844..19 4111 99.8 Minus
CG10336-PA 924 CG10336-RA 96..921 844..19 4111 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10336-RC 1313 CG10336-RC 296..1121 844..19 4119 99.9 Minus
CG10336-RA 1216 CG10336-RA 199..1024 844..19 4119 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18689889..18690714 844..19 4119 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:04:32 has no hits.

BO15888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:58 Download gff for BO15888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10336-PB 135..963 18..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:26 Download gff for BO15888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10336-PA 96..924 18..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:42:33 Download gff for BO15888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10336-RA 199..1024 19..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:47 Download gff for BO15888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10336-RA 199..1024 19..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:47 Download gff for BO15888.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18689889..18690714 19..844 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:42:33 Download gff for BO15888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18689889..18690714 19..844 99   Minus

BO15888.5prime Sequence

922 bp (795 high quality bases) assembled on 2006-05-30

> BO15888.5prime
GAAGTTATCAGTCGACATGGCATCCCTGTTCGGAGATGATGGTGTGGATG
ACCTATTCAATGACAACATTCCGACTGACCCGGATCAGCTGCCCAGCGAT
GGCGAAGGCGAAAAGCTGTTTGCGGACGACGAGGACAACGGCGTAGAACC
TGGTAGCCAGGATGCCCAGATAGTGGAGCCTAAGAAGCGAGCTGTGAGAA
ATCCCCGACCGCGACTCACTGTGGAAACACTTCGAGGTCCTCGTGGCATC
CAGACCATCGAAGATTATTTTAAGGACATCAAATTCAAGGGCAAGGGTTA
CGAGAAAACCGATCTCGACGAGGTGCTTCGCCGCCTGCAGCACTGGGGCC
ATCGTATGTATCCCACCTACACCTTTGACGATGTGCTTAACAATATCGAA
CGGCTGGGCAAGAAGAAACCCCTCCAAGTGCACATGGCGCGATATCGACT
CGGTCAGCTGGAGCAGATGCGCGCCCACGAAGCGGAGGCCCTGGAGGAGG
CGCAGGATGAGCAACAGGAAGGTGCCGGCGATGAACCCTTTGATGAGTTC
GACGCCCTGCTAGGTGAACAGATTGCCATGTCCAGGCTGGCGCCTCCCAG
CCCGCAGCAGTGGAAAATGTCTACTGCTTCCAGTAACAGCACGCTGGCTA
CTCCGTCATTCTCCCGCGGCAATGCTGTAATGTCCACGCCGTACTCCGGT
GTAAATGCGACCTTCGACAGAAGTGGAGCTTCTGTGGCTCCGGCCTTCGA
TCGGAATGGAGCTCCGTTGGCATCGATGGACATCAGCGACTATGGTCAGC
CGCTGCCTCCCTCACAGCCTCCCACGCCGGCGGCTAAAAATTTATCCACG
AACAGATGGCCAGGATTGCGGAAACCGCAGGCTGGCGCAGGAGCGACTTA
AGGCCAAGCAGCAGCAGGAGAG

BO15888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10336-PB 963 CG10336-RB 40..871 17..848 4110 99.7 Plus
CG10336-PA 924 CG10336-RA 1..832 17..848 4110 99.7 Plus
CG10336-PB 963 CG10336-RB 897..947 872..922 255 100 Plus
CG10336-PA 924 CG10336-RA 858..908 872..922 255 100 Plus
CG10336-PB 963 CG10336-RB 872..898 848..874 135 100 Plus
CG10336-PA 924 CG10336-RA 833..859 848..874 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10336-RC 1313 CG10336-RC 201..1108 17..922 4460 99.6 Plus
CG10336-RA 1216 CG10336-RA 104..1011 17..922 4460 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18689794..18690701 17..922 4410 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 09:34:12 has no hits.

BO15888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:59 Download gff for BO15888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10336-PB 37..947 12..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:28 Download gff for BO15888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10336-PA 1..908 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:48 Download gff for BO15888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10336-RA 101..1011 12..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:48 Download gff for BO15888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10336-RA 101..1011 12..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:48 Download gff for BO15888.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18689791..18690701 12..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:48 Download gff for BO15888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18689791..18690701 12..922 99   Plus

BO15888.complete Sequence

955 bp (955 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633617

> BO15888.complete
GAAGTTATCAGTCGACATGGCATCCCTGTTCGGAGATGATGGTGTGGATG
ACCTATTCAATGACAACATTCCGACTGACCCGGATCAGCTGCCCAGCGAT
GGCGAAGGCGAAAAGCTGTTTGCGGACGACGAGGACAACGGCGTAGAACC
TGGTAGCCAGGATGCCCAGATAGTGGAGCCTAAGAAGCGAGCTGTGAGAA
ATCCCCGACCGCGACTCACTGTGGAAACACTTCGAGGTCCTCGTGGCATC
CAGACCATCGAAGATTATTTTAAGGACATCAAATTCAAGGGCAAGGGTTA
CGAGAAAACCGATCTCGACGAGGTGCTTCGCCGCCTGCAGCACTGGGGCC
ATCGTATGTATCCCACCTACACCTTTGACGATGTGCTTAACAATATCGAA
CGGCTGGGCAAGAAGAAACCCCTCCAAGTGCACATGGCGCGATATCGACT
CGGTCAGCTGGAGCAGATGCGCGCCCACGAAGCGGAGGCCCTGGAGGAGG
CGCAGGATGAGCAACAGGAAGGTGCCGGCGATGAACCCTTTGATGAGTTC
GACGCCCTGCTAGGTGAACAGATTGCCATGTCCAGGCTGGCGCCTCCCAG
CCCGCAGCAGTGGAAAATGTCTACTGCTTCCAGTAACAGCACGCTGGCTA
CTCCGTCATTCTCCCGCGGCAATGCTGTAATGTCCACGCCGTACTCCGGT
GTAAATGCGACCTTCGACAGAAGTGGAGCTTCTGTGGCTCCGGCCTTCGA
TCGGAATGGAGCTCCGTTGGCATCGATGGACATCAGCGACTATGGTCAGC
CGCTGCCTCCCTCACAGCCTCCCACGCCGGCGGCTAAGAAATTATCCAAC
GAACAGATGGCCAGGATTGCGGAAAACCGCAGGCTGGCGCAGGAGCGACT
TAAGGCCAAGCAGCAGCAGGAGAGCGGAAGTAAAAGTGCAAGCTTTCTAG
ACCAT

BO15888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10336-RC 924 CG10336-PC 1..921 17..937 4605 100 Plus
CG10336-RA 924 CG10336-PA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10336-RC 1313 CG10336-RC 201..1121 17..937 4605 100 Plus
CG10336-RA 1216 CG10336-RA 104..1024 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18689794..18690714 17..937 4605 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:11 has no hits.

BO15888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:54 Download gff for BO15888.complete
Subject Subject Range Query Range Percent Splice Strand
CG10336-RC 1..924 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:32 Download gff for BO15888.complete
Subject Subject Range Query Range Percent Splice Strand
CG10336-RC 145..1068 12..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:15 Download gff for BO15888.complete
Subject Subject Range Query Range Percent Splice Strand
CG10336-RA 104..1024 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:54 Download gff for BO15888.complete
Subject Subject Range Query Range Percent Splice Strand
CG10336-RC 145..1068 12..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:00 Download gff for BO15888.complete
Subject Subject Range Query Range Percent Splice Strand
CG10336-RA 104..1024 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:00 Download gff for BO15888.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18689794..18690714 17..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:15 Download gff for BO15888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18689794..18690714 17..939 99   Plus

BO15888.pep Sequence

Translation from 16 to 955

> BO15888.pep
MASLFGDDGVDDLFNDNIPTDPDQLPSDGEGEKLFADDEDNGVEPGSQDA
QIVEPKKRAVRNPRPRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDL
DEVLRRLQHWGHRMYPTYTFDDVLNNIERLGKKKPLQVHMARYRLGQLEQ
MRAHEAEALEEAQDEQQEGAGDEPFDEFDALLGEQIAMSRLAPPSPQQWK
MSTASSNSTLATPSFSRGNAVMSTPYSGVNATFDRSGASVAPAFDRNGAP
LASMDISDYGQPLPPSQPPTPAAKKLSNEQMARIAENRRLAQERLKAKQQ
QESGSKSASFLDH

BO15888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10336-PC 307 CG10336-PC 1..307 1..307 1598 100 Plus
CG10336-PA 307 CG10336-PA 1..307 1..307 1598 100 Plus