Clone Sequence Records
BO15888.3prime Sequence
844 bp (771 high quality bases) assembled on 2006-06-02
> BO15888.3prime
ATGGTCTAGAAAGCTTGCACTTTTACTTCCGCTCTCCTGCTGCTGCTTGG
CCTTAAGTCGCTCCTGCGCCAGCCTGCGGTTTTCCGCAATCCTGGCCATC
TGTTCGTTGGATAATTTCTTAGCCGCCGGCGTGGGAGGCTGTGAGGGAGG
CAGCGGCTGACCATAGTCGCTGATGTCCATCGATGCCAACGGAGCTCCAT
TCCGATCGAAGGCCGGAGCCACAGAAGCTCCACTTCTGTCGAAGGTCGCA
TTTACACCGGAGTACGGCGTGGACATTACAGCATTGCCGCGGGAGAATGA
CGGAGTAGCCAGCGTGCTGTTACTGGAAGCAGTAGACATTTTCCACTGCT
GCGGGCTGGGAGGCGCCAGCCTGGACATGGCAATCTGTTCACCTAGCAGG
GCGTCGAACTCATCAAAGGGTTCATCGCCGGCACCTTCCTGTTGCTCATC
CTGCGCCTCCTCCAGGGCCTCCGCTTCGTGGGCGCGCATCTGCTCCAGCT
GACCGAGTCGATATCGCGCCATGTGCACTTGGAGGGGTTTCTTCTTGCCC
AGCCGTTCGATATTGTTAAGCACATCGTCAAAGGTGTAGGTGGGATACAT
ACGATGGCCCCAGTGCTGCAGGCGGCGAAGCACCTCGTCGAGATCGGTTT
TCTCGTAACCCTTGCCCTTGAATTTGATGTCCTTAAAATAATCTTCGATG
GTCTGGATGCCACGAGGACCTCGAAGTGTTTCCACAGTGAGTCGCGGTCG
GGGATTTCTCACAGCTCGCTTCTTANGCTCCACTATCTGGGCATCCTGGC
TACCAGGTTCTACGCCGTTGTCCTCGTCGTCCGCAAACAGCTTT
BO15888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10336-PB | 963 | CG10336-RB | 135..960 | 844..19 | 4111 | 99.8 | Minus |
CG10336-PA | 924 | CG10336-RA | 96..921 | 844..19 | 4111 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10336-RC | 1313 | CG10336-RC | 296..1121 | 844..19 | 4119 | 99.9 | Minus |
CG10336-RA | 1216 | CG10336-RA | 199..1024 | 844..19 | 4119 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18689889..18690714 | 844..19 | 4119 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:04:32 has no hits.
BO15888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:58 Download gff for
BO15888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-PB | 135..963 | 18..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:26 Download gff for
BO15888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-PA | 96..924 | 18..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:42:33 Download gff for
BO15888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-RA | 199..1024 | 19..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:47 Download gff for
BO15888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-RA | 199..1024 | 19..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:47 Download gff for
BO15888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18689889..18690714 | 19..844 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:42:33 Download gff for
BO15888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18689889..18690714 | 19..844 | 99 | | Minus |
BO15888.5prime Sequence
922 bp (795 high quality bases) assembled on 2006-05-30
> BO15888.5prime
GAAGTTATCAGTCGACATGGCATCCCTGTTCGGAGATGATGGTGTGGATG
ACCTATTCAATGACAACATTCCGACTGACCCGGATCAGCTGCCCAGCGAT
GGCGAAGGCGAAAAGCTGTTTGCGGACGACGAGGACAACGGCGTAGAACC
TGGTAGCCAGGATGCCCAGATAGTGGAGCCTAAGAAGCGAGCTGTGAGAA
ATCCCCGACCGCGACTCACTGTGGAAACACTTCGAGGTCCTCGTGGCATC
CAGACCATCGAAGATTATTTTAAGGACATCAAATTCAAGGGCAAGGGTTA
CGAGAAAACCGATCTCGACGAGGTGCTTCGCCGCCTGCAGCACTGGGGCC
ATCGTATGTATCCCACCTACACCTTTGACGATGTGCTTAACAATATCGAA
CGGCTGGGCAAGAAGAAACCCCTCCAAGTGCACATGGCGCGATATCGACT
CGGTCAGCTGGAGCAGATGCGCGCCCACGAAGCGGAGGCCCTGGAGGAGG
CGCAGGATGAGCAACAGGAAGGTGCCGGCGATGAACCCTTTGATGAGTTC
GACGCCCTGCTAGGTGAACAGATTGCCATGTCCAGGCTGGCGCCTCCCAG
CCCGCAGCAGTGGAAAATGTCTACTGCTTCCAGTAACAGCACGCTGGCTA
CTCCGTCATTCTCCCGCGGCAATGCTGTAATGTCCACGCCGTACTCCGGT
GTAAATGCGACCTTCGACAGAAGTGGAGCTTCTGTGGCTCCGGCCTTCGA
TCGGAATGGAGCTCCGTTGGCATCGATGGACATCAGCGACTATGGTCAGC
CGCTGCCTCCCTCACAGCCTCCCACGCCGGCGGCTAAAAATTTATCCACG
AACAGATGGCCAGGATTGCGGAAACCGCAGGCTGGCGCAGGAGCGACTTA
AGGCCAAGCAGCAGCAGGAGAG
BO15888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10336-PB | 963 | CG10336-RB | 40..871 | 17..848 | 4110 | 99.7 | Plus |
CG10336-PA | 924 | CG10336-RA | 1..832 | 17..848 | 4110 | 99.7 | Plus |
CG10336-PB | 963 | CG10336-RB | 897..947 | 872..922 | 255 | 100 | Plus |
CG10336-PA | 924 | CG10336-RA | 858..908 | 872..922 | 255 | 100 | Plus |
CG10336-PB | 963 | CG10336-RB | 872..898 | 848..874 | 135 | 100 | Plus |
CG10336-PA | 924 | CG10336-RA | 833..859 | 848..874 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10336-RC | 1313 | CG10336-RC | 201..1108 | 17..922 | 4460 | 99.6 | Plus |
CG10336-RA | 1216 | CG10336-RA | 104..1011 | 17..922 | 4460 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18689794..18690701 | 17..922 | 4410 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:34:12 has no hits.
BO15888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:59 Download gff for
BO15888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-PB | 37..947 | 12..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:28 Download gff for
BO15888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-PA | 1..908 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:48 Download gff for
BO15888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-RA | 101..1011 | 12..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:48 Download gff for
BO15888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-RA | 101..1011 | 12..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:48 Download gff for
BO15888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18689791..18690701 | 12..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:48 Download gff for
BO15888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18689791..18690701 | 12..922 | 99 | | Plus |
BO15888.complete Sequence
955 bp (955 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633617
> BO15888.complete
GAAGTTATCAGTCGACATGGCATCCCTGTTCGGAGATGATGGTGTGGATG
ACCTATTCAATGACAACATTCCGACTGACCCGGATCAGCTGCCCAGCGAT
GGCGAAGGCGAAAAGCTGTTTGCGGACGACGAGGACAACGGCGTAGAACC
TGGTAGCCAGGATGCCCAGATAGTGGAGCCTAAGAAGCGAGCTGTGAGAA
ATCCCCGACCGCGACTCACTGTGGAAACACTTCGAGGTCCTCGTGGCATC
CAGACCATCGAAGATTATTTTAAGGACATCAAATTCAAGGGCAAGGGTTA
CGAGAAAACCGATCTCGACGAGGTGCTTCGCCGCCTGCAGCACTGGGGCC
ATCGTATGTATCCCACCTACACCTTTGACGATGTGCTTAACAATATCGAA
CGGCTGGGCAAGAAGAAACCCCTCCAAGTGCACATGGCGCGATATCGACT
CGGTCAGCTGGAGCAGATGCGCGCCCACGAAGCGGAGGCCCTGGAGGAGG
CGCAGGATGAGCAACAGGAAGGTGCCGGCGATGAACCCTTTGATGAGTTC
GACGCCCTGCTAGGTGAACAGATTGCCATGTCCAGGCTGGCGCCTCCCAG
CCCGCAGCAGTGGAAAATGTCTACTGCTTCCAGTAACAGCACGCTGGCTA
CTCCGTCATTCTCCCGCGGCAATGCTGTAATGTCCACGCCGTACTCCGGT
GTAAATGCGACCTTCGACAGAAGTGGAGCTTCTGTGGCTCCGGCCTTCGA
TCGGAATGGAGCTCCGTTGGCATCGATGGACATCAGCGACTATGGTCAGC
CGCTGCCTCCCTCACAGCCTCCCACGCCGGCGGCTAAGAAATTATCCAAC
GAACAGATGGCCAGGATTGCGGAAAACCGCAGGCTGGCGCAGGAGCGACT
TAAGGCCAAGCAGCAGCAGGAGAGCGGAAGTAAAAGTGCAAGCTTTCTAG
ACCAT
BO15888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10336-RC | 924 | CG10336-PC | 1..921 | 17..937 | 4605 | 100 | Plus |
CG10336-RA | 924 | CG10336-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10336-RC | 1313 | CG10336-RC | 201..1121 | 17..937 | 4605 | 100 | Plus |
CG10336-RA | 1216 | CG10336-RA | 104..1024 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18689794..18690714 | 17..937 | 4605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:11 has no hits.
BO15888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:54 Download gff for
BO15888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-RC | 1..924 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:32 Download gff for
BO15888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-RC | 145..1068 | 12..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:15 Download gff for
BO15888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-RA | 104..1024 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:54 Download gff for
BO15888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-RC | 145..1068 | 12..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:00 Download gff for
BO15888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10336-RA | 104..1024 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:00 Download gff for
BO15888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18689794..18690714 | 17..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:15 Download gff for
BO15888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18689794..18690714 | 17..939 | 99 | | Plus |
BO15888.pep Sequence
Translation from 16 to 955
> BO15888.pep
MASLFGDDGVDDLFNDNIPTDPDQLPSDGEGEKLFADDEDNGVEPGSQDA
QIVEPKKRAVRNPRPRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDL
DEVLRRLQHWGHRMYPTYTFDDVLNNIERLGKKKPLQVHMARYRLGQLEQ
MRAHEAEALEEAQDEQQEGAGDEPFDEFDALLGEQIAMSRLAPPSPQQWK
MSTASSNSTLATPSFSRGNAVMSTPYSGVNATFDRSGASVAPAFDRNGAP
LASMDISDYGQPLPPSQPPTPAAKKLSNEQMARIAENRRLAQERLKAKQQ
QESGSKSASFLDH
BO15888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10336-PC | 307 | CG10336-PC | 1..307 | 1..307 | 1598 | 100 | Plus |
CG10336-PA | 307 | CG10336-PA | 1..307 | 1..307 | 1598 | 100 | Plus |