BO15894.complete Sequence
1072 bp (1072 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ638744
> BO15894.complete
GAAGTTATCAGTCGACATGTTGCGAATTCTACTTCTGCTACTGGCATTCT
GTGCCTTGGCACATGGACAGTGCCGATTCACCAGAGCTCAAGTGCAAGGG
ACCAATCGGATCTTTATGGTGCGTGGTCAGAACCGCCAGCTGTCCCTTAA
GCGAACAGCCAGTTCGGCGGTTGGCGAAACCCTGCAGATGTGGTGCAATC
CCCGGGACATAGTGGCCACCACCTGCCAGGCGGGAAGGGTTCCAGCCTTC
CAGCCACCCTTGCCCATGACCTGCCGCGCTGCTCCGGCGGCCATCACCAC
ACCGGTCCAAGATCGCAGATGTCCGGCCACCATGTACCGGGTGGGCTACA
ACGTGGGCAACAACCAGTTCCTGGAGCTCTATCGCGCCTGCTTCGATACC
AGAGCTGTGAGGGCTATCTTCGTGGAACACCGGGTGTATGGAAAGCCCTT
CTATATCACCCGACCCTGTGTCCAATTTAGTTCGGATGGAGTGATCAGTG
GCGCGGATGAAGCTAGCTATACGGTCCGAAATATCCACGGCACCTTTAGG
AGGCTGTTTGGCAACAATCAGAACTATATACCGAACAACCGCGATGTGAT
CATCAATCGCGGACATCTGGCCGCCTCGGCCGACTTCTTCTTTGGTGACC
AATTGTGCGCCACCTTCAAGTATGTGAATGCAGTGCCGCAGTTCAAGAGC
ATCAACGATGGCAACTGGGAGACCATCGAGCGATTCGTTCGTAATTCGGT
GACCGGAAACAACTTTGTGAATGTGCGCACCGGGGCCAGGGGCGTACTCT
CGCTGCCATCGGGCAATAGACCCAAGAATGTCTTCCTAAGTGGCAACAGG
AACCCGGTGCCCCAGTGGATGTACAAGATAGTGCGGAACGCCAACAACCA
GCCCATCGTGGCCTTCCTCACCCTGAACAACATCTACGCACGTCAACGTC
CAGCTGCTCCCAACTTTTGTCAGCCCGTGAATTGCCCAGTGGCATTGGTC
AACACGGCACAGGCTGGCTTTTCGTTCTGTTGCAACCCCGCCACTTTCAG
GCCCGCAAGCTTTCTAGACCAT
BO15894.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14062-RB | 1041 | CG14062-PB | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14062-RB | 1180 | CG14062-RB | 4..1041 | 17..1054 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28641724..28642325 | 1054..453 | 3010 | 100 | Minus |
| 3R | 32079331 | 3R | 28642396..28642789 | 452..59 | 1970 | 100 | Minus |
| 3R | 32079331 | 3R | 28642846..28642888 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:23:32 has no hits.
BO15894.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:56 Download gff for
BO15894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 1..1041 | 17..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:36 Download gff for
BO15894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 1..1046 | 14..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:12 Download gff for
BO15894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 9..1041 | 22..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:57 Download gff for
BO15894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 1..1046 | 14..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:37 Download gff for
BO15894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 9..1041 | 22..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:37 Download gff for
BO15894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28641722..28642325 | 453..1056 | 99 | <- | Minus |
| 3R | 28642396..28642788 | 60..452 | 100 | <- | Minus |
| 3R | 28642846..28642883 | 22..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:12 Download gff for
BO15894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24467444..24468047 | 453..1056 | 99 | <- | Minus |
| arm_3R | 24468118..24468510 | 60..452 | 100 | <- | Minus |
| arm_3R | 24468568..24468605 | 22..59 | 100 | | Minus |
BO15894.pep Sequence
Translation from 16 to 1072
> BO15894.pep
MLRILLLLLAFCALAHGQCRFTRAQVQGTNRIFMVRGQNRQLSLKRTASS
AVGETLQMWCNPRDIVATTCQAGRVPAFQPPLPMTCRAAPAAITTPVQDR
RCPATMYRVGYNVGNNQFLELYRACFDTRAVRAIFVEHRVYGKPFYITRP
CVQFSSDGVISGADEASYTVRNIHGTFRRLFGNNQNYIPNNRDVIINRGH
LAASADFFFGDQLCATFKYVNAVPQFKSINDGNWETIERFVRNSVTGNNF
VNVRTGARGVLSLPSGNRPKNVFLSGNRNPVPQWMYKIVRNANNQPIVAF
LTLNNIYARQRPAAPNFCQPVNCPVALVNTAQAGFSFCCNPATFRPASFL
DH
BO15894.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14062-PB | 346 | CG14062-PB | 1..346 | 1..346 | 1850 | 100 | Plus |
| CG12917-PB | 356 | CG12917-PB | 11..354 | 2..344 | 692 | 38.6 | Plus |
| CG33346-PB | 364 | CG33346-PB | 26..345 | 19..344 | 534 | 36.8 | Plus |
| CG9989-PA | 370 | CG9989-PA | 10..358 | 5..344 | 304 | 28 | Plus |
| CG6839-PA | 430 | CG6839-PA | 94..412 | 53..344 | 253 | 24.8 | Plus |
