Clone Sequence Records
BO15895.3prime Sequence
773 bp (773 high quality bases) assembled on 2006-06-02
> BO15895.3prime
ATGGTCTAGAAAGCTTGCCTGCCGGGCGTTGATGATGTCCACGAACTCGG
GCTTCAGGGAGGCGCCTCCGACCAGGAAGCCATCTATGTCGGGCTTCTTG
GCCAGCTCCTTGGCGTTGGCGGCGGTCACGGATCCACCGTACTGGATGCG
CAGGCTGGCGGACACCTCCTTGGAGATGTTGTCGCTCAGCCACTGGCGCA
GGAAGGCGTGGACCTCTTGAGCCTGATCGGGTGTGGCGGTCTGGCCGGTG
CCAATGGCCCAGACGGGCTCGTAGGCCACCACCACGTTCTTCCAGTCCTT
GATCTTCTGGGCGTAGGCGCACATTTGGCGGGCCACCACCTCGTTGGTCT
TGCCGGCCTCGCGCTCCTCCAGGGTCTCACCAATGCAGGCGATGACCTTG
AGGCCCTCGGCCAGGGCGTGCTCGGCCTTCTCGGCGATCAGGGCGTCCGA
TTCGCCGAAGATGGCGCGACGCTCCGAGTGTCCCAGGATCACCCAGTCGG
CGCCGATGTCCTTCAGCATCGCAGGGGAGATCTCGCCGGTGAATGCGCCC
TTGGCCACCTTGTAGGCATTCTGGCCGGCCAGACCCAGCTCGCAGGGCAG
CAGGTTGCGGGCGTACATCAGGTAGATGGCCGGGCAGCCGATGACCACCT
CCGTGTTGGGGTCGAGGGCGGCCGAGCTCAGGGTCTTGGCGATCTCGGCG
ATGGACTTCTGGTCGCCGTTCATCTTCCAGTTGCCTCCCACGCAGAACTT
TCGGCTCATGTCGACTGATAACT
BO15895.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2171-PA | 1047 | Tpi-RA | 302..1044 | 761..19 | 3715 | 100 | Minus |
CG2171-PB | 744 | Tpi-RB | 1..741 | 759..19 | 3705 | 100 | Minus |
CG2171-PC | 744 | Tpi-RC | 1..741 | 759..19 | 3705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-RC | 1268 | CG2171-RC | 262..1004 | 761..19 | 3715 | 100 | Minus |
Tpi-RB | 1112 | CG2171-RB | 106..848 | 761..19 | 3715 | 100 | Minus |
Tpi-RA | 1374 | CG2171-RA | 368..1110 | 761..19 | 3715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30133509..30134048 | 222..761 | 2700 | 100 | Plus |
3R | 32079331 | 3R | 30133245..30133451 | 19..225 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:43:49 has no hits.
BO15895.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:07 Download gff for
BO15895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-PA | 297..1047 | 15..767 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:38 Download gff for
BO15895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2171-PA | 297..1047 | 15..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:51 Download gff for
BO15895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 363..1115 | 13..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:49:52 Download gff for
BO15895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 363..1115 | 13..767 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:49:52 Download gff for
BO15895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30133240..30133448 | 13..222 | 99 | <- | Plus |
3R | 30133510..30134053 | 223..767 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:51 Download gff for
BO15895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25958962..25959170 | 13..222 | 99 | <- | Plus |
arm_3R | 25959232..25959775 | 223..767 | 99 | | Plus |
BO15895.5prime Sequence
773 bp (753 high quality bases) assembled on 2006-05-30
> BO15895.5prime
GAAGTTATCAGTCGACATGAGCCGAAAGTTCTGCGTGGGAGGCAACTGGA
AGATGAACGGCGACCAGAAGTCCATCGCCGAGATCGCCAAGACCCTGAGC
TCGGCCGCCCTCGACCCCAACACGGAGGTGGTCATCGGCTGCCCGGCCAT
CTACCTGATGTACGCCCGCAACCTGCTGCCCTGCGAGCTGGGTCTGGCCG
GCCAGAATGCCTACAAGGTGGCCAAGGGCGCATTCACCGGCGAGATCTCC
CCTGCGATGCTGAAGGACATCGGCGCCGACTGGGTGATCCTGGGACACTC
GGAGCGTCGCGCCATCTTCGGCGAATCGGACGCCCTGATCGCCGAGAAGG
CCGAGCACGCCCTGGCCGAGGGCCTCAAGGTCATCGCCTGCATTGGTGAG
ACCCTGGAGGAGCGCGAGGCCGGCAAGACCAACGAGGTGGTGGCCCGCCA
AATGTGCGCCTACGCCCAGAAGATCAAGGACTGGAAGAACGTGGTGGTGG
CCTACGAGCCCGTCTGGGCCATTGGCACCGGCCAGACCGCCACACCCGAT
CAGGCTCAAGAGGTCCACGCCTTCCTGCGCCAGTGGCTGAGCGACAACAT
CTCCAAGGAGGTGTCCGCCAGCCTGCGCATCCAGTACGGTGGATCCGTGA
CCGCCGCCAACGCCAAGGAGCTGGCCAAGAAGCCCGACATAGATGGCTTC
CTGGTCGGAGGCGCCTCCCTGAAGCCCGAGTTCGTGGACATCATCAACGC
CCGGCAGGCAAGCTTTCTAGACC
BO15895.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2171-PA | 1047 | Tpi-RA | 302..1044 | 15..757 | 3715 | 100 | Plus |
CG2171-PB | 744 | Tpi-RB | 1..741 | 17..757 | 3705 | 100 | Plus |
CG2171-PC | 744 | Tpi-RC | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-RC | 1268 | CG2171-RC | 262..1004 | 15..757 | 3715 | 100 | Plus |
Tpi-RB | 1112 | CG2171-RB | 106..848 | 15..757 | 3715 | 100 | Plus |
Tpi-RA | 1374 | CG2171-RA | 368..1110 | 15..757 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30133509..30134048 | 554..15 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 30133245..30133451 | 757..551 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 10:54:50 has no hits.
BO15895.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:08 Download gff for
BO15895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-PA | 297..1047 | 9..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:40 Download gff for
BO15895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2171-PA | 297..1047 | 9..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:39:02 Download gff for
BO15895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 363..1115 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:37 Download gff for
BO15895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 363..1115 | 9..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:37 Download gff for
BO15895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30133240..30133448 | 554..763 | 99 | <- | Minus |
3R | 30133510..30134053 | 9..553 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:39:02 Download gff for
BO15895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25958962..25959170 | 554..763 | 99 | <- | Minus |
arm_3R | 25959232..25959775 | 9..553 | 99 | | Minus |
BO15895.complete Sequence
775 bp (775 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633620
> BO15895.complete
GAAGTTATCAGTCGACATGAGCCGAAAGTTCTGCGTGGGAGGCAACTGGA
AGATGAACGGCGACCAGAAGTCCATCGCCGAGATCGCCAAGACCCTGAGC
TCGGCCGCCCTCGACCCCAACACGGAGGTGGTCATCGGCTGCCCGGCCAT
CTACCTGATGTACGCCCGCAACCTGCTGCCCTGCGAGCTGGGTCTGGCCG
GCCAGAATGCCTACAAGGTGGCCAAGGGCGCATTCACCGGCGAGATCTCC
CCTGCGATGCTGAAGGACATCGGCGCCGACTGGGTGATCCTGGGACACTC
GGAGCGTCGCGCCATCTTCGGCGAATCGGACGCCCTGATCGCCGAGAAGG
CCGAGCACGCCCTGGCCGAGGGCCTCAAGGTCATCGCCTGCATTGGTGAG
ACCCTGGAGGAGCGCGAGGCCGGCAAGACCAACGAGGTGGTGGCCCGCCA
AATGTGCGCCTACGCCCAGAAGATCAAGGACTGGAAGAACGTGGTGGTGG
CCTACGAGCCCGTCTGGGCCATTGGCACCGGCCAGACCGCCACACCCGAT
CAGGCTCAAGAGGTCCACGCCTTCCTGCGCCAGTGGCTGAGCGACAACAT
CTCCAAGGAGGTGTCCGCCAGCCTGCGCATCCAGTACGGTGGATCCGTGA
CCGCCGCCAACGCCAAGGAGCTGGCCAAGAAGCCCGACATAGATGGCTTC
CTGGTCGGAGGCGCCTCCCTGAAGCCCGAGTTCGTGGACATCATCAACGC
CCGGCAGGCAAGCTTTCTAGACCAT
BO15895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-RA | 1047 | CG2171-PA | 302..1044 | 15..757 | 3715 | 100 | Plus |
Tpi-RC | 744 | CG2171-PC | 1..741 | 17..757 | 3705 | 100 | Plus |
Tpi-RB | 744 | CG2171-PB | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-RC | 1268 | CG2171-RC | 262..1004 | 15..757 | 3715 | 100 | Plus |
Tpi-RB | 1112 | CG2171-RB | 106..848 | 15..757 | 3715 | 100 | Plus |
Tpi-RA | 1374 | CG2171-RA | 368..1110 | 15..757 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30133509..30134048 | 554..15 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 30133245..30133451 | 757..551 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:22:36 has no hits.
BO15895.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:57 Download gff for
BO15895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 297..1047 | 9..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:37 Download gff for
BO15895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RC | 223..975 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:59 Download gff for
BO15895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 370..1110 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:58 Download gff for
BO15895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RC | 223..975 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:12 Download gff for
BO15895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 370..1110 | 17..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:12 Download gff for
BO15895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30133243..30133448 | 554..759 | 99 | <- | Minus |
3R | 30133510..30134046 | 17..553 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:59 Download gff for
BO15895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25958965..25959170 | 554..759 | 99 | <- | Minus |
arm_3R | 25959232..25959768 | 17..553 | 100 | | Minus |
BO15895.pep Sequence
Translation from 16 to 775
> BO15895.pep
MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA
RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAI
FGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYA
QKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVS
ASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINARQASF
LDH
BO15895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-PC | 247 | CG2171-PC | 1..247 | 1..247 | 1268 | 100 | Plus |
Tpi-PB | 247 | CG2171-PB | 1..247 | 1..247 | 1268 | 100 | Plus |
Tpi-PA | 348 | CG2171-PA | 102..348 | 1..247 | 1268 | 100 | Plus |