Clone BO15895 Report

Search the DGRC for BO15895

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptTpi-RB
Protein status:BO15895.pep: validated not full length
Sequenced Size:775

Clone Sequence Records

BO15895.3prime Sequence

773 bp (773 high quality bases) assembled on 2006-06-02

> BO15895.3prime
ATGGTCTAGAAAGCTTGCCTGCCGGGCGTTGATGATGTCCACGAACTCGG
GCTTCAGGGAGGCGCCTCCGACCAGGAAGCCATCTATGTCGGGCTTCTTG
GCCAGCTCCTTGGCGTTGGCGGCGGTCACGGATCCACCGTACTGGATGCG
CAGGCTGGCGGACACCTCCTTGGAGATGTTGTCGCTCAGCCACTGGCGCA
GGAAGGCGTGGACCTCTTGAGCCTGATCGGGTGTGGCGGTCTGGCCGGTG
CCAATGGCCCAGACGGGCTCGTAGGCCACCACCACGTTCTTCCAGTCCTT
GATCTTCTGGGCGTAGGCGCACATTTGGCGGGCCACCACCTCGTTGGTCT
TGCCGGCCTCGCGCTCCTCCAGGGTCTCACCAATGCAGGCGATGACCTTG
AGGCCCTCGGCCAGGGCGTGCTCGGCCTTCTCGGCGATCAGGGCGTCCGA
TTCGCCGAAGATGGCGCGACGCTCCGAGTGTCCCAGGATCACCCAGTCGG
CGCCGATGTCCTTCAGCATCGCAGGGGAGATCTCGCCGGTGAATGCGCCC
TTGGCCACCTTGTAGGCATTCTGGCCGGCCAGACCCAGCTCGCAGGGCAG
CAGGTTGCGGGCGTACATCAGGTAGATGGCCGGGCAGCCGATGACCACCT
CCGTGTTGGGGTCGAGGGCGGCCGAGCTCAGGGTCTTGGCGATCTCGGCG
ATGGACTTCTGGTCGCCGTTCATCTTCCAGTTGCCTCCCACGCAGAACTT
TCGGCTCATGTCGACTGATAACT

BO15895.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2171-PA 1047 Tpi-RA 302..1044 761..19 3715 100 Minus
CG2171-PB 744 Tpi-RB 1..741 759..19 3705 100 Minus
CG2171-PC 744 Tpi-RC 1..741 759..19 3705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-RC 1268 CG2171-RC 262..1004 761..19 3715 100 Minus
Tpi-RB 1112 CG2171-RB 106..848 761..19 3715 100 Minus
Tpi-RA 1374 CG2171-RA 368..1110 761..19 3715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30133509..30134048 222..761 2700 100 Plus
3R 32079331 3R 30133245..30133451 19..225 1035 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:43:49 has no hits.

BO15895.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:07 Download gff for BO15895.3prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-PA 297..1047 15..767 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:38 Download gff for BO15895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2171-PA 297..1047 15..767 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:51 Download gff for BO15895.3prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 363..1115 13..767 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:49:52 Download gff for BO15895.3prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 363..1115 13..767 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:49:52 Download gff for BO15895.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30133240..30133448 13..222 99 <- Plus
3R 30133510..30134053 223..767 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:51 Download gff for BO15895.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25958962..25959170 13..222 99 <- Plus
arm_3R 25959232..25959775 223..767 99   Plus

BO15895.5prime Sequence

773 bp (753 high quality bases) assembled on 2006-05-30

> BO15895.5prime
GAAGTTATCAGTCGACATGAGCCGAAAGTTCTGCGTGGGAGGCAACTGGA
AGATGAACGGCGACCAGAAGTCCATCGCCGAGATCGCCAAGACCCTGAGC
TCGGCCGCCCTCGACCCCAACACGGAGGTGGTCATCGGCTGCCCGGCCAT
CTACCTGATGTACGCCCGCAACCTGCTGCCCTGCGAGCTGGGTCTGGCCG
GCCAGAATGCCTACAAGGTGGCCAAGGGCGCATTCACCGGCGAGATCTCC
CCTGCGATGCTGAAGGACATCGGCGCCGACTGGGTGATCCTGGGACACTC
GGAGCGTCGCGCCATCTTCGGCGAATCGGACGCCCTGATCGCCGAGAAGG
CCGAGCACGCCCTGGCCGAGGGCCTCAAGGTCATCGCCTGCATTGGTGAG
ACCCTGGAGGAGCGCGAGGCCGGCAAGACCAACGAGGTGGTGGCCCGCCA
AATGTGCGCCTACGCCCAGAAGATCAAGGACTGGAAGAACGTGGTGGTGG
CCTACGAGCCCGTCTGGGCCATTGGCACCGGCCAGACCGCCACACCCGAT
CAGGCTCAAGAGGTCCACGCCTTCCTGCGCCAGTGGCTGAGCGACAACAT
CTCCAAGGAGGTGTCCGCCAGCCTGCGCATCCAGTACGGTGGATCCGTGA
CCGCCGCCAACGCCAAGGAGCTGGCCAAGAAGCCCGACATAGATGGCTTC
CTGGTCGGAGGCGCCTCCCTGAAGCCCGAGTTCGTGGACATCATCAACGC
CCGGCAGGCAAGCTTTCTAGACC

BO15895.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2171-PA 1047 Tpi-RA 302..1044 15..757 3715 100 Plus
CG2171-PB 744 Tpi-RB 1..741 17..757 3705 100 Plus
CG2171-PC 744 Tpi-RC 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-RC 1268 CG2171-RC 262..1004 15..757 3715 100 Plus
Tpi-RB 1112 CG2171-RB 106..848 15..757 3715 100 Plus
Tpi-RA 1374 CG2171-RA 368..1110 15..757 3715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30133509..30134048 554..15 2700 100 Minus
3R 32079331 3R 30133245..30133451 757..551 1035 100 Minus
Blast to na_te.dros performed on 2015-02-09 10:54:50 has no hits.

BO15895.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:08 Download gff for BO15895.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-PA 297..1047 9..761 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:40 Download gff for BO15895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2171-PA 297..1047 9..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:39:02 Download gff for BO15895.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 363..1115 9..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:37 Download gff for BO15895.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 363..1115 9..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:37 Download gff for BO15895.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30133240..30133448 554..763 99 <- Minus
3R 30133510..30134053 9..553 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:39:02 Download gff for BO15895.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25958962..25959170 554..763 99 <- Minus
arm_3R 25959232..25959775 9..553 99   Minus

BO15895.complete Sequence

775 bp (775 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633620

> BO15895.complete
GAAGTTATCAGTCGACATGAGCCGAAAGTTCTGCGTGGGAGGCAACTGGA
AGATGAACGGCGACCAGAAGTCCATCGCCGAGATCGCCAAGACCCTGAGC
TCGGCCGCCCTCGACCCCAACACGGAGGTGGTCATCGGCTGCCCGGCCAT
CTACCTGATGTACGCCCGCAACCTGCTGCCCTGCGAGCTGGGTCTGGCCG
GCCAGAATGCCTACAAGGTGGCCAAGGGCGCATTCACCGGCGAGATCTCC
CCTGCGATGCTGAAGGACATCGGCGCCGACTGGGTGATCCTGGGACACTC
GGAGCGTCGCGCCATCTTCGGCGAATCGGACGCCCTGATCGCCGAGAAGG
CCGAGCACGCCCTGGCCGAGGGCCTCAAGGTCATCGCCTGCATTGGTGAG
ACCCTGGAGGAGCGCGAGGCCGGCAAGACCAACGAGGTGGTGGCCCGCCA
AATGTGCGCCTACGCCCAGAAGATCAAGGACTGGAAGAACGTGGTGGTGG
CCTACGAGCCCGTCTGGGCCATTGGCACCGGCCAGACCGCCACACCCGAT
CAGGCTCAAGAGGTCCACGCCTTCCTGCGCCAGTGGCTGAGCGACAACAT
CTCCAAGGAGGTGTCCGCCAGCCTGCGCATCCAGTACGGTGGATCCGTGA
CCGCCGCCAACGCCAAGGAGCTGGCCAAGAAGCCCGACATAGATGGCTTC
CTGGTCGGAGGCGCCTCCCTGAAGCCCGAGTTCGTGGACATCATCAACGC
CCGGCAGGCAAGCTTTCTAGACCAT

BO15895.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-RA 1047 CG2171-PA 302..1044 15..757 3715 100 Plus
Tpi-RC 744 CG2171-PC 1..741 17..757 3705 100 Plus
Tpi-RB 744 CG2171-PB 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-RC 1268 CG2171-RC 262..1004 15..757 3715 100 Plus
Tpi-RB 1112 CG2171-RB 106..848 15..757 3715 100 Plus
Tpi-RA 1374 CG2171-RA 368..1110 15..757 3715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30133509..30134048 554..15 2700 100 Minus
3R 32079331 3R 30133245..30133451 757..551 1035 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:22:36 has no hits.

BO15895.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:57 Download gff for BO15895.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 297..1047 9..761 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:37 Download gff for BO15895.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RC 223..975 9..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:59 Download gff for BO15895.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 370..1110 17..759 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:58 Download gff for BO15895.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RC 223..975 9..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:12 Download gff for BO15895.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 370..1110 17..759 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:12 Download gff for BO15895.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30133243..30133448 554..759 99 <- Minus
3R 30133510..30134046 17..553 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:59 Download gff for BO15895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25958965..25959170 554..759 99 <- Minus
arm_3R 25959232..25959768 17..553 100   Minus

BO15895.pep Sequence

Translation from 16 to 775

> BO15895.pep
MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA
RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAI
FGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYA
QKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVS
ASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINARQASF
LDH

BO15895.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-PC 247 CG2171-PC 1..247 1..247 1268 100 Plus
Tpi-PB 247 CG2171-PB 1..247 1..247 1268 100 Plus
Tpi-PA 348 CG2171-PA 102..348 1..247 1268 100 Plus