Clone Sequence Records
BO15903.3prime Sequence
623 bp (623 high quality bases) assembled on 2006-06-02
> BO15903.3prime
ATGGTCTAGAAAGCTTGCCCACAGGCCCGACGAGTAGCCGCCTGGGGGAA
TGCGGTTCTTGTTGATCACCGGAGTGCCGCCATTGGACGACTCCTGGCGC
TGGGAATACTCGTTGGCTACGACCTTGTAGCCCTCGCCTGTGACGGGGTT
GCCCTTGCTCATATTGCGGAAGACTGATCTCGAGCCACTGTTCATCTTGA
GGTTCTCGGTGGAGGACGACACCGAAGACGAGGCCGAGGACACCGATCCG
CTCTTGCCGTTGTAGTGGCCATTGGTGGTCAGCAGCTTCTGGGCGGCAAC
GGCCTCTGTGTTCTGACCAAAGGGAATGCTGCTCTTCATGTGGTTCTTGC
CGGGGGTGATCGGGCGGGTGGGCTCCCCAAACAGCCGAGAGTGGGAGTCG
ACGGTCTTCTGGCCGCGACGTGGTGCATCACCGTTGTTTTTCACTCCATT
ATCTTTCTCGGCAGCGAATATGTTGGACGCCATGCGATTCTTCACGTTCC
TGGGGGTCTGCGGCATCTCCGATCCAAAGATGTCGCTCGATCCGCCGCCC
GGGGGCCTCAGCACCTTGCTGCTGGCCTGATTATCGGTGCAATCAAAGTT
AGAGATCATGTCGACTGATAACT
BO15903.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31363-PA | 594 | Jupiter-RA | 1..591 | 609..19 | 2955 | 100 | Minus |
CG31363-PD | 576 | Jupiter-RD | 1..436 | 609..174 | 2180 | 100 | Minus |
CG31363-PC | 594 | Jupiter-RC | 63..454 | 565..174 | 1960 | 100 | Minus |
CG31363-PH | 609 | Jupiter-RH | 211..469 | 432..174 | 1295 | 100 | Minus |
CG31363-PE | 627 | Jupiter-RE | 229..487 | 432..174 | 1295 | 100 | Minus |
CG31363-PH | 609 | Jupiter-RH | 1..178 | 609..432 | 890 | 100 | Minus |
CG31363-PH | 609 | Jupiter-RH | 470..606 | 155..19 | 685 | 100 | Minus |
CG31363-PD | 576 | Jupiter-RD | 437..573 | 155..19 | 685 | 100 | Minus |
CG31363-PE | 627 | Jupiter-RE | 488..624 | 155..19 | 685 | 100 | Minus |
CG31363-PC | 594 | Jupiter-RC | 455..591 | 155..19 | 685 | 100 | Minus |
CG31363-PB | 558 | Jupiter-RB | 419..555 | 155..19 | 685 | 100 | Minus |
CG31363-PE | 627 | Jupiter-RE | 63..196 | 565..432 | 670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RA | 1535 | CG31363-RA | 160..750 | 609..19 | 2955 | 100 | Minus |
Jupiter-RD | 1517 | CG31363-RD | 160..732 | 609..19 | 2675 | 97 | Minus |
Jupiter-RC | 1581 | CG31363-RC | 268..796 | 565..19 | 2455 | 96.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11592367..11592625 | 174..432 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 11591171..11591307 | 19..155 | 685 | 100 | Plus |
3R | 32079331 | 3R | 11593631..11593770 | 430..569 | 685 | 99.3 | Plus |
3R | 32079331 | 3R | 11619703..11619747 | 565..609 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:37:58 has no hits.
BO15903.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:12 Download gff for
BO15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PA | 1..594 | 15..609 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:47 Download gff for
BO15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PA | 1..594 | 15..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:35 Download gff for
BO15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..753 | 15..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:40 Download gff for
BO15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..753 | 15..609 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:40 Download gff for
BO15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11593633..11593766 | 432..565 | 100 | <- | Plus |
3R | 11619704..11619747 | 566..609 | 100 | | Plus |
3R | 11591168..11591307 | 15..155 | 98 | <- | Plus |
3R | 11591995..11592012 | 156..173 | 100 | <- | Plus |
3R | 11592367..11592624 | 174..431 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:35 Download gff for
BO15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416890..7417029 | 15..155 | 98 | <- | Plus |
arm_3R | 7417717..7417734 | 156..173 | 100 | <- | Plus |
arm_3R | 7418089..7418346 | 174..431 | 100 | <- | Plus |
arm_3R | 7419355..7419488 | 432..565 | 100 | <- | Plus |
arm_3R | 7445426..7445469 | 566..609 | 100 | | Plus |
BO15903.5prime Sequence
623 bp (623 high quality bases) assembled on 2006-06-02
> BO15903.5prime
GAAGTTATCAGTCGACATGATCTCTAACTTTGATTGCACCGATAATCAGG
CCAGCAGCAAGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACATCTTT
GGATCGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGGCGTC
CAACATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGTGATG
CACCACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTTTGGG
GAGCCCACCCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCAGCAT
TCCCTTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTGACCA
CCAATGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTCGTCT
TCGGTGTCGTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGAGATC
AGTCTTCCGCAATATGAGCAAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGGCAAGCTTTCTAGACC
BO15903.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31363-PA | 594 | Jupiter-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
CG31363-PD | 576 | Jupiter-RD | 1..436 | 17..452 | 2180 | 100 | Plus |
CG31363-PC | 594 | Jupiter-RC | 63..454 | 61..452 | 1960 | 100 | Plus |
CG31363-PH | 609 | Jupiter-RH | 211..469 | 194..452 | 1295 | 100 | Plus |
CG31363-PE | 627 | Jupiter-RE | 229..487 | 194..452 | 1295 | 100 | Plus |
CG31363-PH | 609 | Jupiter-RH | 1..178 | 17..194 | 890 | 100 | Plus |
CG31363-PH | 609 | Jupiter-RH | 470..606 | 471..607 | 685 | 100 | Plus |
CG31363-PD | 576 | Jupiter-RD | 437..573 | 471..607 | 685 | 100 | Plus |
CG31363-PE | 627 | Jupiter-RE | 488..624 | 471..607 | 685 | 100 | Plus |
CG31363-PC | 594 | Jupiter-RC | 455..591 | 471..607 | 685 | 100 | Plus |
CG31363-PB | 558 | Jupiter-RB | 419..555 | 471..607 | 685 | 100 | Plus |
CG31363-PE | 627 | Jupiter-RE | 63..196 | 61..194 | 670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RA | 1535 | CG31363-RA | 160..750 | 17..607 | 2955 | 100 | Plus |
Jupiter-RD | 1517 | CG31363-RD | 160..732 | 17..607 | 2675 | 97 | Plus |
Jupiter-RC | 1581 | CG31363-RC | 268..796 | 61..607 | 2455 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11592367..11592625 | 452..194 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 11591171..11591307 | 607..471 | 685 | 100 | Minus |
3R | 32079331 | 3R | 11593631..11593770 | 196..57 | 685 | 99.3 | Minus |
3R | 32079331 | 3R | 11619703..11619747 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:34:05 has no hits.
BO15903.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:13 Download gff for
BO15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PA | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:48 Download gff for
BO15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PA | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:43 Download gff for
BO15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..753 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:31 Download gff for
BO15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..753 | 17..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:31 Download gff for
BO15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11591168..11591307 | 471..611 | 98 | <- | Minus |
3R | 11591995..11592012 | 453..470 | 100 | <- | Minus |
3R | 11592367..11592624 | 195..452 | 100 | <- | Minus |
3R | 11593633..11593766 | 61..194 | 100 | <- | Minus |
3R | 11619704..11619747 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:43 Download gff for
BO15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416890..7417029 | 471..611 | 98 | <- | Minus |
arm_3R | 7417717..7417734 | 453..470 | 100 | <- | Minus |
arm_3R | 7418089..7418346 | 195..452 | 100 | <- | Minus |
arm_3R | 7419355..7419488 | 61..194 | 100 | <- | Minus |
arm_3R | 7445426..7445469 | 17..60 | 100 | | Minus |
BO15903.complete Sequence
625 bp (625 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633621
> BO15903.complete
GAAGTTATCAGTCGACATGATCTCTAACTTTGATTGCACCGATAATCAGG
CCAGCAGCAAGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACATCTTT
GGATCGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGGCGTC
CAACATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGTGATG
CACCACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTTTGGG
GAGCCCACCCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCAGCAT
TCCCTTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTGACCA
CCAATGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTCGTCT
TCGGTGTCGTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGAGATC
AGTCTTCCGCAATATGAGCAAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGGCAAGCTTTCTAGACCAT
BO15903.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RA | 594 | CG31363-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Jupiter-RD | 576 | CG31363-PD | 1..573 | 17..607 | 2650 | 97 | Plus |
Jupiter-RC | 594 | CG31363-PC | 63..591 | 61..607 | 2430 | 96.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RA | 1535 | CG31363-RA | 160..750 | 17..607 | 2955 | 100 | Plus |
Jupiter-RD | 1517 | CG31363-RD | 160..732 | 17..607 | 2650 | 97 | Plus |
Jupiter-RC | 1581 | CG31363-RC | 268..796 | 61..607 | 2430 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11592367..11592625 | 452..194 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 11591171..11591307 | 607..471 | 685 | 100 | Minus |
3R | 32079331 | 3R | 11593631..11593770 | 196..57 | 685 | 99.3 | Minus |
3R | 32079331 | 3R | 11619703..11619747 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:39:07 has no hits.
BO15903.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:44 Download gff for
BO15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:29 Download gff for
BO15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 188..778 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:06 Download gff for
BO15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..750 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:44 Download gff for
BO15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 188..781 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:18 Download gff for
BO15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..750 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:18 Download gff for
BO15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11592367..11592624 | 195..452 | 100 | <- | Minus |
3R | 11593633..11593766 | 61..194 | 100 | <- | Minus |
3R | 11619704..11619747 | 17..60 | 100 | | Minus |
3R | 11591169..11591307 | 471..609 | 98 | <- | Minus |
3R | 11591995..11592012 | 453..470 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:06 Download gff for
BO15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7419355..7419488 | 61..194 | 100 | <- | Minus |
arm_3R | 7445426..7445469 | 17..60 | 100 | | Minus |
arm_3R | 7416891..7417029 | 471..609 | 98 | <- | Minus |
arm_3R | 7417717..7417734 | 453..470 | 100 | <- | Minus |
arm_3R | 7418089..7418346 | 195..452 | 100 | <- | Minus |
BO15903.pep Sequence
Translation from 16 to 625
> BO15903.pep
MISNFDCTDNQASSKVLRPPGGGSSDIFGSEMPQTPRNVKNRMASNIFAA
EKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSSIPFGQN
TEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSRSVFRNM
SKGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLWASF
LDH
BO15903.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-PA | 197 | CG31363-PA | 1..197 | 1..197 | 1027 | 100 | Plus |
Jupiter-PD | 191 | CG31363-PD | 1..191 | 1..197 | 976 | 96.4 | Plus |
Jupiter-PH | 202 | CG31363-PH | 1..202 | 1..197 | 954 | 91.3 | Plus |
Jupiter-PC | 197 | CG31363-PC | 17..197 | 11..197 | 904 | 94.1 | Plus |
Jupiter-PE | 208 | CG31363-PE | 17..208 | 11..197 | 882 | 88.9 | Plus |