Clone Sequence Records
BO15909.5prime Sequence
395 bp (395 high quality bases) assembled on 2006-06-02
> BO15909.5prime
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGGTAAGTCGACGACTCGCCGCAAGCTTTCTAGACC
BO15909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2216-PE | 366 | Fer1HCH-RE | 1..363 | 17..379 | 1815 | 100 | Plus |
CG2216-PA | 618 | Fer1HCH-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
CG2216-PB | 618 | Fer1HCH-RB | 1..345 | 17..361 | 1725 | 100 | Plus |
CG2216-PC | 618 | Fer1HCH-RC | 1..345 | 17..361 | 1725 | 100 | Plus |
CG2216-PD | 618 | Fer1HCH-RD | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-RE | 1197 | CG2216-RE | 107..469 | 17..379 | 1815 | 100 | Plus |
Fer1HCH-RD | 1187 | CG2216-RD | 159..503 | 17..361 | 1725 | 100 | Plus |
Fer1HCH-RC | 1227 | CG2216-RC | 199..543 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30386301..30386596 | 379..84 | 1480 | 100 | Minus |
3R | 32079331 | 3R | 30387463..30387530 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 10:54:23 has no hits.
BO15909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:17 Download gff for
BO15909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2216-PE | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:55 Download gff for
BO15909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2216-PE | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:38:58 Download gff for
BO15909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RE | 107..469 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:33 Download gff for
BO15909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RE | 107..469 | 17..379 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:33 Download gff for
BO15909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30386301..30386596 | 84..379 | 100 | <- | Minus |
3R | 30387464..30387530 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:38:58 Download gff for
BO15909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26212023..26212318 | 84..379 | 100 | <- | Minus |
arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BO15909.complete Sequence
397 bp (397 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633623
> BO15909.complete
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGGTAAGTCGACGACTCGCCGCAAGCTTTCTAGACCAT
BO15909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-RE | 366 | CG2216-PE | 1..363 | 17..379 | 1815 | 100 | Plus |
Fer1HCH-RD | 618 | CG2216-PD | 1..345 | 17..361 | 1725 | 100 | Plus |
Fer1HCH-RC | 618 | CG2216-PC | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-RE | 1197 | CG2216-RE | 107..469 | 17..379 | 1815 | 100 | Plus |
Fer1HCH-RD | 1187 | CG2216-RD | 159..503 | 17..361 | 1725 | 100 | Plus |
Fer1HCH-RC | 1227 | CG2216-RC | 199..543 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30386301..30386596 | 379..84 | 1480 | 100 | Minus |
3R | 32079331 | 3R | 30387463..30387530 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:43 has no hits.
BO15909.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:59 Download gff for
BO15909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RE | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:44 Download gff for
BO15909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RE | 371..733 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:11 Download gff for
BO15909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RE | 107..469 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:59 Download gff for
BO15909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RE | 371..733 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:06 Download gff for
BO15909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RE | 107..469 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:06 Download gff for
BO15909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30386299..30386596 | 84..381 | 99 | <- | Minus |
3R | 30387464..30387530 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:11 Download gff for
BO15909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26212021..26212318 | 84..381 | 99 | <- | Minus |
arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BO15909.pep Sequence
Translation from 16 to 397
> BO15909.pep
MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ
EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM
RGQLTEGVSDLINVPVSRRLAASFLDH
BO15909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-PE | 121 | CG2216-PE | 1..121 | 1..121 | 614 | 100 | Plus |
Fer1HCH-PD | 205 | CG2216-PD | 1..115 | 1..115 | 588 | 100 | Plus |
Fer1HCH-PC | 205 | CG2216-PC | 1..115 | 1..115 | 588 | 100 | Plus |
Fer1HCH-PB | 205 | CG2216-PB | 1..115 | 1..115 | 588 | 100 | Plus |
Fer1HCH-PA | 205 | CG2216-PA | 1..115 | 1..115 | 588 | 100 | Plus |