Clone BO15909 Report

Search the DGRC for BO15909

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptFer1HCH-RE
Protein status:BO15909.pep: validated full length
Sequenced Size:397

Clone Sequence Records

BO15909.5prime Sequence

395 bp (395 high quality bases) assembled on 2006-06-02

> BO15909.5prime
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGGTAAGTCGACGACTCGCCGCAAGCTTTCTAGACC

BO15909.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2216-PE 366 Fer1HCH-RE 1..363 17..379 1815 100 Plus
CG2216-PA 618 Fer1HCH-RA 1..345 17..361 1725 100 Plus
CG2216-PB 618 Fer1HCH-RB 1..345 17..361 1725 100 Plus
CG2216-PC 618 Fer1HCH-RC 1..345 17..361 1725 100 Plus
CG2216-PD 618 Fer1HCH-RD 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-RE 1197 CG2216-RE 107..469 17..379 1815 100 Plus
Fer1HCH-RD 1187 CG2216-RD 159..503 17..361 1725 100 Plus
Fer1HCH-RC 1227 CG2216-RC 199..543 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30386301..30386596 379..84 1480 100 Minus
3R 32079331 3R 30387463..30387530 84..17 340 100 Minus
Blast to na_te.dros performed on 2015-02-09 10:54:23 has no hits.

BO15909.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:17 Download gff for BO15909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2216-PE 1..366 17..380 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:55 Download gff for BO15909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2216-PE 1..366 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:38:58 Download gff for BO15909.5prime
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RE 107..469 17..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:33 Download gff for BO15909.5prime
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RE 107..469 17..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:33 Download gff for BO15909.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30386301..30386596 84..379 100 <- Minus
3R 30387464..30387530 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:38:58 Download gff for BO15909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26212023..26212318 84..379 100 <- Minus
arm_3R 26213186..26213252 17..83 100   Minus

BO15909.complete Sequence

397 bp (397 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633623

> BO15909.complete
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGGTAAGTCGACGACTCGCCGCAAGCTTTCTAGACCAT

BO15909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-RE 366 CG2216-PE 1..363 17..379 1815 100 Plus
Fer1HCH-RD 618 CG2216-PD 1..345 17..361 1725 100 Plus
Fer1HCH-RC 618 CG2216-PC 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-RE 1197 CG2216-RE 107..469 17..379 1815 100 Plus
Fer1HCH-RD 1187 CG2216-RD 159..503 17..361 1725 100 Plus
Fer1HCH-RC 1227 CG2216-RC 199..543 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30386301..30386596 379..84 1480 100 Minus
3R 32079331 3R 30387463..30387530 84..17 340 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:45:43 has no hits.

BO15909.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:59 Download gff for BO15909.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RE 1..366 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:44 Download gff for BO15909.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RE 371..733 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:11 Download gff for BO15909.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RE 107..469 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:59 Download gff for BO15909.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RE 371..733 17..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:06 Download gff for BO15909.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RE 107..469 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:06 Download gff for BO15909.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30386299..30386596 84..381 99 <- Minus
3R 30387464..30387530 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:11 Download gff for BO15909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26212021..26212318 84..381 99 <- Minus
arm_3R 26213186..26213252 17..83 100   Minus

BO15909.pep Sequence

Translation from 16 to 397

> BO15909.pep
MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ
EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM
RGQLTEGVSDLINVPVSRRLAASFLDH

BO15909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-PE 121 CG2216-PE 1..121 1..121 614 100 Plus
Fer1HCH-PD 205 CG2216-PD 1..115 1..115 588 100 Plus
Fer1HCH-PC 205 CG2216-PC 1..115 1..115 588 100 Plus
Fer1HCH-PB 205 CG2216-PB 1..115 1..115 588 100 Plus
Fer1HCH-PA 205 CG2216-PA 1..115 1..115 588 100 Plus