Clone Sequence Records
BO15910.3prime Sequence
392 bp (392 high quality bases) assembled on 2006-06-02
> BO15910.3prime
ATGGTCTAGAAAGCTTGCCCCTGGTCCATACAAAACTATTAGGCAGAGGT
TTGGCAAAGGTATGCGCAGCACCATTTCCTCAAAAGTTGCAAATTGGTCA
TCTGTCAGTAGAGGCGCCAATAGTTCATCTTCGTAGCTGGCCACCAAGTC
CAAGTTGTACTTGCCCGGTTGTTGAACTTCGTAGGGCATCAAAGAGAGCA
CTGATTCGCCGAGGCAGCTCTTTGCTACCTGAAAGTCCTGTTCGCAGCTC
AAGCAGGTGCGCACGCCCATACAACCGCAACTATGAATTGTATTCATCCT
GGGGTTGTACTGATTTGTCATTCTCCATTTCTGCATCGTCATCGGACTCC
GAATCCATTTCAGCAGCATTCTTGCCATGTCGACTGATAACT
BO15910.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18854-PC | 363 | CG18854-RC | 1..360 | 378..19 | 1800 | 100 | Minus |
CG18854-PA | 282 | CG18854-RA | 1..279 | 297..19 | 1395 | 100 | Minus |
CG18854-PB | 282 | CG18854-RB | 1..279 | 297..19 | 1395 | 100 | Minus |
CG4036-PA | 915 | CG4036-RA | 558..749 | 217..26 | 660 | 93.7 | Minus |
CG4036-PA | 915 | CG4036-RA | 18..68 | 280..230 | 205 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 579..775 | 217..21 | 790 | 93.4 | Minus |
CG4036-RA | 1002 | CG4036-RA | 631..827 | 217..21 | 790 | 93.4 | Minus |
CG4036-RA | 1002 | CG4036-RA | 70..152 | 301..219 | 295 | 90.4 | Minus |
CG4036-RB | 950 | CG4036-RB | 20..100 | 299..219 | 285 | 90.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9789367..9789617 | 50..300 | 1255 | 100 | Plus |
2L | 23513712 | 2L | 9791527..9791694 | 217..50 | 705 | 94.6 | Minus |
2L | 23513712 | 2L | 9789790..9789870 | 298..378 | 405 | 100 | Plus |
2L | 23513712 | 2L | 9790966..9791048 | 301..219 | 295 | 90.4 | Minus |
2L | 23513712 | 2L | 9790662..9790709 | 362..315 | 180 | 91.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:38:36 has no hits.
BO15910.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:18 Download gff for
BO15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-PC | 1..363 | 16..378 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:57 Download gff for
BO15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-PC | 1..363 | 16..378 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:05:32 Download gff for
BO15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..827 | 21..216 | 93 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:21 Download gff for
BO15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..827 | 21..216 | 93 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:21 Download gff for
BO15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9789367..9789615 | 50..298 | 100 | <- | Plus |
2L | 9789791..9789883 | 299..390 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:05:32 Download gff for
BO15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9789367..9789615 | 50..298 | 100 | <- | Plus |
arm_2L | 9789791..9789883 | 299..390 | 95 | | Plus |
BO15910.5prime Sequence
392 bp (392 high quality bases) assembled on 2006-06-02
> BO15910.5prime
GAAGTTATCAGTCGACATGGCAAGAATGCTGCTGAAATGGATTCGGAGTC
CGATGACGATGCAGAAATGGAGAATGACAAATCAGTACAACCCCAGGATG
AATACAATTCATAGTTGCGGTTGTATGGGCGTGCGCACCTGCTTGAGCTG
CGAACAGGACTTTCAGGTAGCAAAGAGCTGCCTCGGCGAATCAGTGCTCT
CTTTGATGCCCTACGAAGTTCAACAACCGGGCAAGTACAACTTGGACTTG
GTGGCCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCA
ATTTGCAACTTTTGAGGAAATGGTGCTGCGCATACCTTTGCCAAACCTCT
GCCTAATAGTTTTGTATGGACCAGGGGCAAGCTTTCTAGACC
BO15910.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18854-PC | 363 | CG18854-RC | 1..360 | 17..376 | 1800 | 100 | Plus |
CG18854-PA | 282 | CG18854-RA | 1..279 | 98..376 | 1395 | 100 | Plus |
CG18854-PB | 282 | CG18854-RB | 1..279 | 98..376 | 1395 | 100 | Plus |
CG4036-PA | 915 | CG4036-RA | 558..749 | 178..369 | 660 | 93.7 | Plus |
CG4036-PA | 915 | CG4036-RA | 18..68 | 115..165 | 205 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 579..775 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 1002 | CG4036-RA | 631..827 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 1002 | CG4036-RA | 70..152 | 94..176 | 295 | 90.4 | Plus |
CG4036-RB | 950 | CG4036-RB | 20..100 | 96..176 | 285 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9789367..9789617 | 345..95 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 9791527..9791694 | 178..345 | 705 | 94.6 | Plus |
2L | 23513712 | 2L | 9789790..9789870 | 97..17 | 405 | 100 | Minus |
2L | 23513712 | 2L | 9790966..9791048 | 94..176 | 295 | 90.4 | Plus |
2L | 23513712 | 2L | 9790662..9790709 | 33..80 | 180 | 91.7 | Plus |
Blast to na_te.dros performed on 2015-02-09 10:53:00 has no hits.
BO15910.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:19 Download gff for
BO15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-PC | 1..363 | 17..379 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:58 Download gff for
BO15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-PC | 1..363 | 17..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:38:44 Download gff for
BO15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..827 | 179..374 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:23 Download gff for
BO15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..827 | 179..374 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:23 Download gff for
BO15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9789367..9789615 | 97..345 | 100 | <- | Minus |
2L | 9789791..9789883 | 5..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:38:44 Download gff for
BO15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9789367..9789615 | 97..345 | 100 | <- | Minus |
arm_2L | 9789791..9789883 | 5..96 | 95 | | Minus |
BO15910.complete Sequence
394 bp (394 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633624
> BO15910.complete
GAAGTTATCAGTCGACATGGCAAGAATGCTGCTGAAATGGATTCGGAGTC
CGATGACGATGCAGAAATGGAGAATGACAAATCAGTACAACCCCAGGATG
AATACAATTCATAGTTGCGGTTGTATGGGCGTGCGCACCTGCTTGAGCTG
CGAACAGGACTTTCAGGTAGCAAAGAGCTGCCTCGGCGAATCAGTGCTCT
CTTTGATGCCCTACGAAGTTCAACAACCGGGCAAGTACAACTTGGACTTG
GTGGCCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCA
ATTTGCAACTTTTGAGGAAATGGTGCTGCGCATACCTTTGCCAAACCTCT
GCCTAATAGTTTTGTATGGACCAGGGGCAAGCTTTCTAGACCAT
BO15910.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 915 | CG4036-PB | 558..754 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 915 | CG4036-PA | 558..754 | 178..374 | 790 | 93.4 | Plus |
CG4036-RB | 915 | CG4036-PB | 1..79 | 98..176 | 275 | 89.9 | Plus |
CG4036-RA | 915 | CG4036-PA | 1..79 | 98..176 | 275 | 89.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 579..775 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 1002 | CG4036-RA | 631..827 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 1002 | CG4036-RA | 70..152 | 94..176 | 295 | 90.4 | Plus |
CG4036-RB | 950 | CG4036-RB | 20..100 | 96..176 | 285 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9789367..9789617 | 345..95 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 9791527..9791694 | 178..345 | 705 | 94.6 | Plus |
2L | 23513712 | 2L | 9789790..9789870 | 97..17 | 405 | 100 | Minus |
2L | 23513712 | 2L | 9790966..9791048 | 94..176 | 295 | 90.4 | Plus |
2L | 23513712 | 2L | 9790662..9790709 | 33..80 | 180 | 91.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:52:29 has no hits.
BO15910.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:00 Download gff for
BO15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-RC | 1..363 | 17..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:39 Download gff for
BO15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-RC | 557..942 | 5..385 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:25 Download gff for
BO15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..827 | 179..374 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:00 Download gff for
BO15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-RC | 557..942 | 5..385 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:04 Download gff for
BO15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..827 | 179..374 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:04 Download gff for
BO15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9789273..9789306 | 346..378 | 94 | <- | Minus |
2L | 9789367..9789615 | 97..345 | 100 | <- | Minus |
2L | 9789791..9789870 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:25 Download gff for
BO15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9789273..9789306 | 346..378 | 94 | <- | Minus |
arm_2L | 9789367..9789615 | 97..345 | 100 | <- | Minus |
arm_2L | 9789791..9789870 | 17..96 | 100 | | Minus |
BO15910.pep Sequence
Translation from 16 to 394
> BO15910.pep
MARMLLKWIRSPMTMQKWRMTNQYNPRMNTIHSCGCMGVRTCLSCEQDFQ
VAKSCLGESVLSLMPYEVQQPGKYNLDLVASYEDELLAPLLTDDQFATFE
EMVLRIPLPNLCLIVLYGPGASFLDH
BO15910.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-PB | 304 | CG4036-PB | 183..258 | 51..126 | 293 | 76.3 | Plus |
CG4036-PA | 304 | CG4036-PA | 183..258 | 51..126 | 293 | 76.3 | Plus |