BO15913.complete Sequence
1135 bp (1135 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633626
> BO15913.complete
GAAGTTATCAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CACCATGCGCACCATGGAACTGATTTTGCGGCAGAAATTTGATTCCGATC
GGTCCAAGTACTTGCCGCCGATTAAACGCGGCGGATATATCGACATATAT
ATGACTAGCTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGT
CTTCGAGGCGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGA
CCCTGGGCAACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCC
GATTTGATTTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGA
GGGCAAGGAGATCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACG
AGCTACTCAAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAG
CTTGTGATGCAAACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGT
GCTGGAGAAACGCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTG
TGGAGTACTTGAAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTT
TTTGGGGATCTTACGGACATACCCATAACCGATGCCCCGGAGGGCGAGAC
CTGGGATTTCATTCGTACCATCTTCGAGCACTCCTTCAAGGTGCTGAAAC
CCGACGGAAAGTATTTGACTCATGGCAATGGGTCCACCTGCAAGGTGCAG
CTGCGTCTATTCGAGGAGCAGTTGAATTTGCTGCGTCCCAAGGTGAAGTT
CACCACCACCAAGGCGTTTGTGCCGTCGTTCATGGAAGAGTGGCTCTTCT
ACCAAGTGACTTTCGCCGCAAGCTTTCTAGACCAT
BO15913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-RD | 1377 | CG4300-PD | 1..1101 | 17..1117 | 5505 | 100 | Plus |
| CG4300-RA | 1104 | CG4300-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
| CG4300-RC | 1374 | CG4300-PC | 391..1098 | 410..1117 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-RD | 1983 | CG4300-RD | 78..1178 | 17..1117 | 5505 | 100 | Plus |
| CG4300-RA | 1983 | CG4300-RA | 78..1178 | 17..1117 | 5505 | 100 | Plus |
| CG4300-RC | 1980 | CG4300-RC | 468..1175 | 410..1117 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12272461..12273041 | 1117..537 | 2905 | 100 | Minus |
| 3L | 28110227 | 3L | 12276890..12277174 | 301..17 | 1425 | 100 | Minus |
| 3L | 28110227 | 3L | 12273498..12273623 | 536..411 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 12275076..12275187 | 413..302 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:31:17 has no hits.
BO15913.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:24 Download gff for
BO15913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 1..1104 | 17..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:08 Download gff for
BO15913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 81..1205 | 2..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:09 Download gff for
BO15913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 78..1178 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:24 Download gff for
BO15913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 81..1205 | 2..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:57 Download gff for
BO15913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 78..1178 | 17..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:57 Download gff for
BO15913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12272457..12273041 | 537..1119 | 99 | <- | Minus |
| 3L | 12273498..12273620 | 414..536 | 100 | <- | Minus |
| 3L | 12275076..12275187 | 302..413 | 100 | <- | Minus |
| 3L | 12276890..12277174 | 17..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:09 Download gff for
BO15913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12265557..12266141 | 537..1119 | 99 | <- | Minus |
| arm_3L | 12266598..12266720 | 414..536 | 100 | <- | Minus |
| arm_3L | 12268176..12268287 | 302..413 | 100 | <- | Minus |
| arm_3L | 12269990..12270274 | 17..301 | 100 | | Minus |
BO15913.pep Sequence
Translation from 16 to 1135
> BO15913.pep
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDTMRTM
ELILRQKFDSDRSKYLPPIKRGGYIDIYMTSSDERIIEYDIDKVVFEARS
PFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEIC
ILGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRK
GDQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIR
TIFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKA
FVPSFMEEWLFYQVTFAASFLDH
BO15913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-PA | 367 | CG4300-PA | 1..367 | 1..367 | 1915 | 100 | Plus |
| CG4300-PD | 458 | CG4300-PD | 1..367 | 1..367 | 1915 | 100 | Plus |
| CG4300-PB | 366 | CG4300-PB | 1..366 | 1..367 | 1766 | 92.9 | Plus |
| CG4300-PC | 457 | CG4300-PC | 1..366 | 1..367 | 1766 | 92.9 | Plus |
| SpdS-PC | 287 | CG8327-PC | 26..196 | 141..320 | 156 | 30.5 | Plus |
