Clone Sequence Records
BO15915.3prime Sequence
769 bp (672 high quality bases) assembled on 2006-06-02
> BO15915.3prime
ATGGTCTAGAAAGCTTGCCTCGTTGACAGAACTGGAGTTCAGCAGAGCCG
TGTCCTCGGGAATGGGCTTCCGCTTGTAGGAGGGCTCAGTGGCTAGGTAG
ACAACCAGCGCCCCGAAGACCACGTACATTACTCCAATCACATTGGCCAA
CACACCAGCCGGTGGAAGAGTGGAGTAAGCCGGAGTTTTGATGGCGAAGA
TGGCCTTCTCGGTTATGCCCATCAGGGCACTAGCAATAGCCAGAACGAAT
CCAAAGAGTCCGAAGTAGATGTGCAGCGGCATCATGGCGATCCTGTAGTT
CTCCCTCAACCCCGGCGCCAAAAAGGCCACAAATCCGGCCACATACTGCA
GCGAGAAGACGATCACCGCGGAGAGCCCCAGCCAAGAGTGCAGGGAGTAC
ATGTTGGGAATGGGCGGATTGGCCAAGTTGTGGGAATCGAAGACCGTCTT
CAGGGCAATCACCGTCAGAATGAATGCACCCATGTGGATGCCGGCGTGGG
TAAGCTTCAGAGTCTTCTTGCGCGTGGTGCGGAAACCACGATAGATCAGA
ATGGAGTTGCCATACAGGTAAATGAAGCCAATGGTCATGAACAGCGGATG
CCAGTTGAACTCCACGCCGGGATTTGAGGTGCCGGCCAGACCGCCGAAGT
GCTGGCCAATCCAGGTGGCCACCAGGACGATCATGGTCAGGCCGCACAGC
TGGGTGAGCACATAGAGCACCTTAAAGTTGATCAGCGCTGGATCCATGTT
GGGCTTGCCGCTGCCCAGT
BO15915.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PC | 765 | CG1275-RC | 12..762 | 769..19 | 3730 | 99.8 | Minus |
CG1275-PB | 1023 | CG1275-RB | 274..1020 | 765..19 | 3710 | 99.8 | Minus |
CG1275-PA | 1023 | CG1275-RA | 274..1020 | 765..19 | 3710 | 99.8 | Minus |
CG1275-PD | 732 | CG1275-RD | 1..729 | 747..19 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RC | 1300 | CG1275-RC | 203..953 | 769..19 | 3740 | 99.9 | Minus |
CG1275-RA | 1574 | CG1275-RA | 472..1218 | 765..19 | 3720 | 99.9 | Minus |
CG1275-RB | 1698 | CG1275-RB | 596..1342 | 765..19 | 3720 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 191..554 | 1820 | 100 | Plus |
3L | 28110227 | 3L | 2253777..2253987 | 555..765 | 1040 | 99.5 | Plus |
3L | 28110227 | 3L | 2253100..2253271 | 19..190 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:37:47 has no hits.
BO15915.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:20 Download gff for
BO15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PC | 12..765 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:01:59 Download gff for
BO15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PC | 12..765 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:34 Download gff for
BO15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 203..957 | 14..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:38 Download gff for
BO15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 203..957 | 14..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:38 Download gff for
BO15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253096..2253271 | 14..190 | 98 | <- | Plus |
3L | 2253329..2253692 | 191..554 | 100 | <- | Plus |
3L | 2253777..2253988 | 555..769 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:34 Download gff for
BO15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253777..2253988 | 555..769 | 98 | | Plus |
arm_3L | 2253096..2253271 | 14..190 | 98 | <- | Plus |
arm_3L | 2253329..2253692 | 191..554 | 100 | <- | Plus |
BO15915.5prime Sequence
794 bp (724 high quality bases) assembled on 2006-06-02
> BO15915.5prime
GAAGTTATCAGTCGACATGTTGTTCTCACTGGGCAGCGGCAAGGCCAACA
TGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTG
TGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAGCACTT
CGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATC
CGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTG
ATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCA
CGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGA
CGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCAACATGTAC
TCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTCGCTGCA
GTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAGGGAGAACT
ACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCTTTGGATTC
GTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAGGCCATCTT
CGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGGTGTGTTGG
CCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGGTTGTCTAC
CTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAGGACACGGC
TCTGCTGAACTCCAGTTCTGTCAACGAGGCAAGCTTTCTAGACC
BO15915.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PC | 765 | CG1275-RC | 1..762 | 17..778 | 3810 | 100 | Plus |
CG1275-PB | 1023 | CG1275-RB | 274..1020 | 32..778 | 3735 | 100 | Plus |
CG1275-PA | 1023 | CG1275-RA | 274..1020 | 32..778 | 3735 | 100 | Plus |
CG1275-PD | 732 | CG1275-RD | 1..729 | 50..778 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RC | 1300 | CG1275-RC | 191..953 | 16..778 | 3815 | 100 | Plus |
CG1275-RA | 1574 | CG1275-RA | 472..1218 | 32..778 | 3735 | 100 | Plus |
CG1275-RB | 1698 | CG1275-RB | 596..1342 | 32..778 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 606..243 | 1820 | 100 | Minus |
3L | 28110227 | 3L | 2253777..2253987 | 242..32 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 2253100..2253271 | 778..607 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:53:14 has no hits.
BO15915.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:21 Download gff for
BO15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PC | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:01 Download gff for
BO15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PC | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:35 Download gff for
BO15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 184..957 | 6..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:00 Download gff for
BO15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 184..957 | 6..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:00 Download gff for
BO15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253096..2253271 | 607..783 | 98 | <- | Minus |
3L | 2253329..2253692 | 243..606 | 100 | <- | Minus |
3L | 2253777..2253986 | 33..242 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:35 Download gff for
BO15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253096..2253271 | 607..783 | 98 | <- | Minus |
arm_3L | 2253329..2253692 | 243..606 | 100 | <- | Minus |
arm_3L | 2253777..2253986 | 33..242 | 100 | <- | Minus |
BO15915.complete Sequence
796 bp (796 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633627
> BO15915.complete
GAAGTTATCAGTCGACATGTTGTTCTCACTGGGCAGCGGCAAGGCCAACA
TGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTG
TGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAGCACTT
CGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATC
CGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTG
ATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCA
CGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGA
CGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCAACATGTAC
TCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTCGCTGCA
GTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAGGGAGAACT
ACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCTTTGGATTC
GTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAGGCCATCTT
CGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGGTGTGTTGG
CCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGGTTGTCTAC
CTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAGGACACGGC
TCTGCTGAACTCCAGTTCTGTCAACGAGGCAAGCTTTCTAGACCAT
BO15915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RC | 765 | CG1275-PC | 1..762 | 17..778 | 3810 | 100 | Plus |
CG1275-RA | 1023 | CG1275-PA | 274..1020 | 32..778 | 3735 | 100 | Plus |
CG1275-RB | 1023 | CG1275-PB | 274..1020 | 32..778 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RC | 1300 | CG1275-RC | 191..953 | 16..778 | 3815 | 100 | Plus |
CG1275-RA | 1574 | CG1275-RA | 472..1218 | 32..778 | 3735 | 100 | Plus |
CG1275-RB | 1698 | CG1275-RB | 596..1342 | 32..778 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 606..243 | 1820 | 100 | Minus |
3L | 28110227 | 3L | 2253777..2253987 | 242..32 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 2253100..2253271 | 778..607 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:59:21 has no hits.
BO15915.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:04 Download gff for
BO15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:30 Download gff for
BO15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 130..903 | 6..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:34 Download gff for
BO15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 197..953 | 22..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:04 Download gff for
BO15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 130..903 | 6..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:24 Download gff for
BO15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 197..953 | 22..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:24 Download gff for
BO15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253098..2253271 | 607..780 | 98 | <- | Minus |
3L | 2253777..2253992 | 23..242 | 98 | | Minus |
3L | 2253329..2253692 | 243..606 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:34 Download gff for
BO15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253777..2253992 | 23..242 | 98 | | Minus |
arm_3L | 2253098..2253271 | 607..780 | 98 | <- | Minus |
arm_3L | 2253329..2253692 | 243..606 | 100 | <- | Minus |
BO15915.pep Sequence
Translation from 16 to 796
> BO15915.pep
MLFSLGSGKANMDPALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAG
TSNPGVEFNWHPLFMTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHM
GAFILTVIALKTVFDSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGF
VAFLAPGLRENYRIAMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTP
AYSTLPPAGVLANVIGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSS
SVNEASFLDH
BO15915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PC | 254 | CG1275-PC | 1..254 | 1..254 | 1307 | 100 | Plus |
CG1275-PA | 340 | CG1275-PA | 92..340 | 6..254 | 1284 | 100 | Plus |
CG1275-PB | 340 | CG1275-PB | 92..340 | 6..254 | 1284 | 100 | Plus |
CG1275-PD | 243 | CG1275-PD | 1..243 | 12..254 | 1253 | 100 | Plus |
nemy-PL | 256 | CG8776-PL | 25..237 | 19..228 | 281 | 33.6 | Plus |