Clone Sequence Records
BO15918.3prime Sequence
356 bp (356 high quality bases) assembled on 2006-06-02
> BO15918.3prime
ATGGTCTAGAAAGCTTGCCTGAACGGGCCTGGGCAGATGGGCACCCTCGG
GCTGGAAGCCGTTCTCATCGGCCAGGTACTGAATGCTGTAGGTCTGACCA
TCGTCACCGACATAGGCATAGGATCCGCGGACAACAATTGCTTCGTGATC
GGTGCCCACGTCCTTCAGCTGGCCTTCCTCCTGATGCGACTTTCCGTCGC
TCGTCTCCACGGCAAACTTGTAGCCCTCGGGCAGGACATCGCTGTCGAAG
CGCAGCACCTGAGCATCCTGCTGGATGGCTGGAGGAGCGGCCAGTGAGCA
GGCAAGGATACAGGTGAAGGCGATGGCAATAGTGAATTTCATGTCGACTG
ATAACT
BO15918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6955-PA | 327 | Lcp65Ad-RA | 1..324 | 342..19 | 1620 | 100 | Minus |
CG6956-PA | 330 | Lcp65Ac-RA | 274..310 | 66..30 | 160 | 97.2 | Minus |
CG18777-PA | 309 | CG18777-RA | 248..291 | 74..31 | 145 | 93.1 | Minus |
CG10529-PA | 300 | Lcp65Ae-RA | 247..284 | 72..35 | 140 | 94.7 | Minus |
CG8511-PA | 405 | CG8511-RA | 347..389 | 74..32 | 140 | 93 | Minus |
CG18779-PA | 318 | CG18779-RA | 259..300 | 72..31 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-RB | 616 | CG6955-RB | 75..398 | 342..19 | 1620 | 100 | Minus |
Lcp65Ad-RA | 521 | CG6955-RA | 75..398 | 342..19 | 1620 | 100 | Minus |
Lcp65Ac-RA | 505 | CG6956-RA | 191..402 | 241..30 | 400 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6143691..6143883 | 211..19 | 965 | 100 | Minus |
3L | 28110227 | 3L | 6143469..6143599 | 342..212 | 655 | 100 | Minus |
3L | 28110227 | 3L | 6145111..6145290 | 209..30 | 330 | 78.9 | Minus |
3L | 28110227 | 3L | 6147581..6147652 | 31..102 | 195 | 84.7 | Plus |
3L | 28110227 | 3L | 6150452..6150523 | 31..102 | 195 | 84.7 | Plus |
3L | 28110227 | 3L | 6152286..6152359 | 30..103 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:26:31 has no hits.
BO15918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:23 Download gff for
BO15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6955-PA | 1..327 | 16..342 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:04 Download gff for
BO15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6955-PA | 1..327 | 16..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:14 Download gff for
BO15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..402 | 15..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:53:46 Download gff for
BO15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..402 | 15..342 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:53:46 Download gff for
BO15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6143469..6143599 | 212..342 | 100 | -> | Minus |
3L | 6143691..6143887 | 15..211 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:14 Download gff for
BO15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6136569..6136699 | 212..342 | 100 | -> | Minus |
arm_3L | 6136791..6136987 | 15..211 | 98 | | Minus |
BO15918.5prime Sequence
356 bp (356 high quality bases) assembled on 2006-06-02
> BO15918.5prime
GAAGTTATCAGTCGACATGAAATTCACTATTGCCATCGCCTTCACCTGTA
TCCTTGCCTGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAG
GTGCTGCGCTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGT
GGAGACGAGCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACG
TGGGCACCGATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTC
GGTGACGATGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGG
CTTCCAGCCCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGGCAAGCTTTC
TAGACC
BO15918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6955-PA | 327 | Lcp65Ad-RA | 1..324 | 17..340 | 1620 | 100 | Plus |
CG6956-PA | 330 | Lcp65Ac-RA | 274..310 | 293..329 | 160 | 97.2 | Plus |
CG18777-PA | 309 | CG18777-RA | 248..291 | 285..328 | 145 | 93.1 | Plus |
CG10529-PA | 300 | Lcp65Ae-RA | 247..284 | 287..324 | 140 | 94.7 | Plus |
CG8511-PA | 405 | CG8511-RA | 347..389 | 285..327 | 140 | 93 | Plus |
CG18779-PA | 318 | CG18779-RA | 259..300 | 287..328 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-RB | 616 | CG6955-RB | 75..398 | 17..340 | 1620 | 100 | Plus |
Lcp65Ad-RA | 521 | CG6955-RA | 75..398 | 17..340 | 1620 | 100 | Plus |
Lcp65Ac-RA | 505 | CG6956-RA | 191..402 | 118..329 | 400 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6143691..6143883 | 148..340 | 965 | 100 | Plus |
3L | 28110227 | 3L | 6143469..6143599 | 17..147 | 655 | 100 | Plus |
3L | 28110227 | 3L | 6145111..6145290 | 150..329 | 330 | 78.9 | Plus |
3L | 28110227 | 3L | 6147581..6147652 | 328..257 | 195 | 84.7 | Minus |
3L | 28110227 | 3L | 6150452..6150523 | 328..257 | 195 | 84.7 | Minus |
3L | 28110227 | 3L | 6152286..6152359 | 329..256 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:52:39 has no hits.
BO15918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:25 Download gff for
BO15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6955-PA | 1..327 | 17..343 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:06 Download gff for
BO15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6955-PA | 1..327 | 17..343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:28 Download gff for
BO15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..402 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:54 Download gff for
BO15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..402 | 17..344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:54 Download gff for
BO15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6143469..6143599 | 17..147 | 100 | -> | Plus |
3L | 6143691..6143887 | 148..344 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:28 Download gff for
BO15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6136569..6136699 | 17..147 | 100 | -> | Plus |
arm_3L | 6136791..6136987 | 148..344 | 98 | | Plus |
BO15918.complete Sequence
358 bp (358 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633628
> BO15918.complete
GAAGTTATCAGTCGACATGAAATTCACTATTGCCATCGCCTTCACCTGTA
TCCTTGCCTGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAG
GTGCTGCGCTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGT
GGAGACGAGCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACG
TGGGCACCGATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTC
GGTGACGATGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGG
CTTCCAGCCCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGGCAAGCTTTC
TAGACCAT
BO15918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-RB | 327 | CG6955-PB | 1..324 | 17..340 | 1620 | 100 | Plus |
Lcp65Ad-RA | 327 | CG6955-PA | 1..324 | 17..340 | 1620 | 100 | Plus |
Lcp65Ac-RA | 330 | CG6956-PA | 99..310 | 118..329 | 400 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-RB | 616 | CG6955-RB | 75..398 | 17..340 | 1620 | 100 | Plus |
Lcp65Ad-RA | 521 | CG6955-RA | 75..398 | 17..340 | 1620 | 100 | Plus |
Lcp65Ac-RA | 505 | CG6956-RA | 191..402 | 118..329 | 400 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6143691..6143883 | 148..340 | 965 | 100 | Plus |
3L | 28110227 | 3L | 6143469..6143599 | 17..147 | 655 | 100 | Plus |
3L | 28110227 | 3L | 6145111..6145290 | 150..329 | 330 | 78.9 | Plus |
3L | 28110227 | 3L | 6147581..6147652 | 328..257 | 195 | 84.7 | Minus |
3L | 28110227 | 3L | 6150452..6150523 | 328..257 | 195 | 84.7 | Minus |
3L | 28110227 | 3L | 6152286..6152359 | 329..256 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:07 has no hits.
BO15918.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:09 Download gff for
BO15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 1..327 | 17..343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:44 Download gff for
BO15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 63..390 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:01 Download gff for
BO15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..398 | 17..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:10 Download gff for
BO15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 63..390 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:53 Download gff for
BO15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..398 | 17..342 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:53 Download gff for
BO15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6143469..6143599 | 17..147 | 100 | -> | Plus |
3L | 6143691..6143883 | 148..342 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:01 Download gff for
BO15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6136569..6136699 | 17..147 | 100 | -> | Plus |
arm_3L | 6136791..6136983 | 148..342 | 98 | | Plus |
BO15918.pep Sequence
Translation from 16 to 358
> BO15918.pep
MKFTIAIAFTCILACSLAAPPAIQQDAQVLRFDSDVLPEGYKFAVETSDG
KSHQEEGQLKDVGTDHEAIVVRGSYAYVGDDGQTYSIQYLADENGFQPEG
AHLPRPVQASFLDH
BO15918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-PB | 108 | CG6955-PB | 1..108 | 1..108 | 564 | 100 | Plus |
Lcp65Ad-PA | 108 | CG6955-PA | 1..108 | 1..108 | 564 | 100 | Plus |
Lcp65Ac-PA | 109 | CG6956-PA | 1..103 | 1..104 | 382 | 69.2 | Plus |
Lcp65Ag3-PA | 105 | CG18779-PA | 1..100 | 1..104 | 290 | 54.8 | Plus |
Lcp65Ag1-PA | 105 | CG10530-PA | 1..100 | 1..104 | 287 | 53.8 | Plus |