Clone BO15918 Report

Search the DGRC for BO15918

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptLcp65Ad-RA
Protein status:BO15918.pep: validated full length
Sequenced Size:358

Clone Sequence Records

BO15918.3prime Sequence

356 bp (356 high quality bases) assembled on 2006-06-02

> BO15918.3prime
ATGGTCTAGAAAGCTTGCCTGAACGGGCCTGGGCAGATGGGCACCCTCGG
GCTGGAAGCCGTTCTCATCGGCCAGGTACTGAATGCTGTAGGTCTGACCA
TCGTCACCGACATAGGCATAGGATCCGCGGACAACAATTGCTTCGTGATC
GGTGCCCACGTCCTTCAGCTGGCCTTCCTCCTGATGCGACTTTCCGTCGC
TCGTCTCCACGGCAAACTTGTAGCCCTCGGGCAGGACATCGCTGTCGAAG
CGCAGCACCTGAGCATCCTGCTGGATGGCTGGAGGAGCGGCCAGTGAGCA
GGCAAGGATACAGGTGAAGGCGATGGCAATAGTGAATTTCATGTCGACTG
ATAACT

BO15918.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6955-PA 327 Lcp65Ad-RA 1..324 342..19 1620 100 Minus
CG6956-PA 330 Lcp65Ac-RA 274..310 66..30 160 97.2 Minus
CG18777-PA 309 CG18777-RA 248..291 74..31 145 93.1 Minus
CG10529-PA 300 Lcp65Ae-RA 247..284 72..35 140 94.7 Minus
CG8511-PA 405 CG8511-RA 347..389 74..32 140 93 Minus
CG18779-PA 318 CG18779-RA 259..300 72..31 135 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RB 616 CG6955-RB 75..398 342..19 1620 100 Minus
Lcp65Ad-RA 521 CG6955-RA 75..398 342..19 1620 100 Minus
Lcp65Ac-RA 505 CG6956-RA 191..402 241..30 400 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6143691..6143883 211..19 965 100 Minus
3L 28110227 3L 6143469..6143599 342..212 655 100 Minus
3L 28110227 3L 6145111..6145290 209..30 330 78.9 Minus
3L 28110227 3L 6147581..6147652 31..102 195 84.7 Plus
3L 28110227 3L 6150452..6150523 31..102 195 84.7 Plus
3L 28110227 3L 6152286..6152359 30..103 190 83.8 Plus
Blast to na_te.dros performed on 2015-02-10 18:26:31 has no hits.

BO15918.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:23 Download gff for BO15918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6955-PA 1..327 16..342 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:04 Download gff for BO15918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6955-PA 1..327 16..342 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:14 Download gff for BO15918.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..402 15..342 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:53:46 Download gff for BO15918.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..402 15..342 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:53:46 Download gff for BO15918.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6143469..6143599 212..342 100 -> Minus
3L 6143691..6143887 15..211 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:14 Download gff for BO15918.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6136569..6136699 212..342 100 -> Minus
arm_3L 6136791..6136987 15..211 98   Minus

BO15918.5prime Sequence

356 bp (356 high quality bases) assembled on 2006-06-02

> BO15918.5prime
GAAGTTATCAGTCGACATGAAATTCACTATTGCCATCGCCTTCACCTGTA
TCCTTGCCTGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAG
GTGCTGCGCTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGT
GGAGACGAGCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACG
TGGGCACCGATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTC
GGTGACGATGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGG
CTTCCAGCCCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGGCAAGCTTTC
TAGACC

BO15918.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6955-PA 327 Lcp65Ad-RA 1..324 17..340 1620 100 Plus
CG6956-PA 330 Lcp65Ac-RA 274..310 293..329 160 97.2 Plus
CG18777-PA 309 CG18777-RA 248..291 285..328 145 93.1 Plus
CG10529-PA 300 Lcp65Ae-RA 247..284 287..324 140 94.7 Plus
CG8511-PA 405 CG8511-RA 347..389 285..327 140 93 Plus
CG18779-PA 318 CG18779-RA 259..300 287..328 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RB 616 CG6955-RB 75..398 17..340 1620 100 Plus
Lcp65Ad-RA 521 CG6955-RA 75..398 17..340 1620 100 Plus
Lcp65Ac-RA 505 CG6956-RA 191..402 118..329 400 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6143691..6143883 148..340 965 100 Plus
3L 28110227 3L 6143469..6143599 17..147 655 100 Plus
3L 28110227 3L 6145111..6145290 150..329 330 78.9 Plus
3L 28110227 3L 6147581..6147652 328..257 195 84.7 Minus
3L 28110227 3L 6150452..6150523 328..257 195 84.7 Minus
3L 28110227 3L 6152286..6152359 329..256 190 83.8 Minus
Blast to na_te.dros performed on 2015-02-04 01:52:39 has no hits.

BO15918.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:25 Download gff for BO15918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6955-PA 1..327 17..343 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:06 Download gff for BO15918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6955-PA 1..327 17..343 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:28 Download gff for BO15918.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..402 17..344 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:54 Download gff for BO15918.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..402 17..344 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:54 Download gff for BO15918.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6143469..6143599 17..147 100 -> Plus
3L 6143691..6143887 148..344 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:28 Download gff for BO15918.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6136569..6136699 17..147 100 -> Plus
arm_3L 6136791..6136987 148..344 98   Plus

BO15918.complete Sequence

358 bp (358 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633628

> BO15918.complete
GAAGTTATCAGTCGACATGAAATTCACTATTGCCATCGCCTTCACCTGTA
TCCTTGCCTGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAG
GTGCTGCGCTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGT
GGAGACGAGCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACG
TGGGCACCGATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTC
GGTGACGATGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGG
CTTCCAGCCCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGGCAAGCTTTC
TAGACCAT

BO15918.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RB 327 CG6955-PB 1..324 17..340 1620 100 Plus
Lcp65Ad-RA 327 CG6955-PA 1..324 17..340 1620 100 Plus
Lcp65Ac-RA 330 CG6956-PA 99..310 118..329 400 79.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RB 616 CG6955-RB 75..398 17..340 1620 100 Plus
Lcp65Ad-RA 521 CG6955-RA 75..398 17..340 1620 100 Plus
Lcp65Ac-RA 505 CG6956-RA 191..402 118..329 400 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6143691..6143883 148..340 965 100 Plus
3L 28110227 3L 6143469..6143599 17..147 655 100 Plus
3L 28110227 3L 6145111..6145290 150..329 330 78.9 Plus
3L 28110227 3L 6147581..6147652 328..257 195 84.7 Minus
3L 28110227 3L 6150452..6150523 328..257 195 84.7 Minus
3L 28110227 3L 6152286..6152359 329..256 190 83.8 Minus
Blast to na_te.dros performed on 2014-11-27 20:21:07 has no hits.

BO15918.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:09 Download gff for BO15918.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..327 17..343 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:44 Download gff for BO15918.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 63..390 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:01 Download gff for BO15918.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..398 17..342 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:10 Download gff for BO15918.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 63..390 17..344 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:53 Download gff for BO15918.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..398 17..342 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:53 Download gff for BO15918.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6143469..6143599 17..147 100 -> Plus
3L 6143691..6143883 148..342 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:01 Download gff for BO15918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6136569..6136699 17..147 100 -> Plus
arm_3L 6136791..6136983 148..342 98   Plus

BO15918.pep Sequence

Translation from 16 to 358

> BO15918.pep
MKFTIAIAFTCILACSLAAPPAIQQDAQVLRFDSDVLPEGYKFAVETSDG
KSHQEEGQLKDVGTDHEAIVVRGSYAYVGDDGQTYSIQYLADENGFQPEG
AHLPRPVQASFLDH

BO15918.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-PB 108 CG6955-PB 1..108 1..108 564 100 Plus
Lcp65Ad-PA 108 CG6955-PA 1..108 1..108 564 100 Plus
Lcp65Ac-PA 109 CG6956-PA 1..103 1..104 382 69.2 Plus
Lcp65Ag3-PA 105 CG18779-PA 1..100 1..104 290 54.8 Plus
Lcp65Ag1-PA 105 CG10530-PA 1..100 1..104 287 53.8 Plus