Clone Sequence Records
BO15919.3prime Sequence
713 bp (670 high quality bases) assembled on 2006-06-02
> BO15919.3prime
ATGGTCTAGAAAGCTTGCGTTTGTGGAGGAGCCGTTGCCAAACATCCGTC
CGCTGTGCGATTTTCTGGAATACTTTGGACGGATGATGTCCTTGAAAGTG
AATGCGGATGCGAGTGGAGGCTTTTCCGAATTGCTCGTGGAGTCCGGACC
CTGTCCTTGTGAGGAAGACAGCGTCGCATAAGCTGCATTCCTGCTGGTTG
GAAGTCCATCGAGATATTTTAGCTGGGGAAGCACCTGTAGTATATACTCG
CGGGGTCCTTGGCCCCCGAAAACTGTGCGGATGCCAGGATTCCCCATGCA
AGAGAGCTGATCCAGCGCAGGACAGTGCCGTTCGATGCGGTGTATCCAAT
CGGTTATATTTGCTATATCGCAATTGTTGATCCACAAGATCCTTAAGCTC
GGCAAATAAGGAAAAGTGTTTATGTCCAGGTTTACGTTGCGGTCCAGGAT
TAAAGTGTCCAGATCCTCGAAAAAGGAGAGAAATCTCAAGTTTCGGAAAT
CATTGTGACTCAAATCGAGAAACTTGGTCTGCGCTGCGAATTTGTCGGCC
AGTCGCCGCGGAATTGTCTTCAGGTTCTCATAGGCCAGCGAAATGCGTCC
GTTGTCCTCTAGGATGCTTTCCGAAAATGATACATCTTCACTTGGACAAC
TGCTGATGGAAATGTTGCCACTAAAGGAATACGGATTCGGCGTAATCATG
TCGACTGATAACT
BO15919.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-PA | 684 | CG31274-RA | 1..681 | 699..19 | 3405 | 100 | Minus |
CG31274-PB | 843 | CG31274-RB | 160..840 | 699..19 | 3405 | 100 | Minus |
CG31447-PA | 843 | MESK4-RA | 160..840 | 699..19 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-RB | 1399 | CG31274-RB | 281..961 | 699..19 | 3405 | 100 | Minus |
MESK4-RB | 1488 | CG31447-RB | 271..951 | 699..19 | 3405 | 100 | Minus |
MESK4-RA | 1390 | CG31447-RA | 271..951 | 699..19 | 3405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16989518..16989882 | 383..19 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 16993730..16994094 | 383..19 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 16989138..16989455 | 699..382 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 16993350..16993667 | 699..382 | 1590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:15:02 has no hits.
BO15919.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:26 Download gff for
BO15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-PA | 1..684 | 16..699 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:07 Download gff for
BO15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31447-PA | 160..843 | 16..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:36:57 Download gff for
BO15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RB | 271..956 | 14..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:43:07 Download gff for
BO15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RA | 271..956 | 14..699 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:43:07 Download gff for
BO15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16989138..16989454 | 383..699 | 100 | -> | Minus |
3R | 16989519..16989887 | 14..382 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:36:57 Download gff for
BO15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12814860..12815176 | 383..699 | 100 | -> | Minus |
arm_3R | 12815241..12815609 | 14..382 | 99 | | Minus |
BO15919.5prime Sequence
713 bp (713 high quality bases) assembled on 2006-06-02
> BO15919.5prime
GAAGTTATCAGTCGACATGATTACGCCGAATCCGTATTCCTTTAGTGGCA
ACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAGC
ATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGAC
AATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTCG
ATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCCTTTTTCGAG
GATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGACATAAACAC
TTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGATA
TAGCAAATATAACCGATTGGATACACCGCATCGAACGGCACTGTCCTGCG
CTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCGG
GGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAAT
ATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTCT
TCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTCC
ACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAAAGTATTCCA
GAAAATCGCACAGCGGACGGATGTTTGGCAACGGCTCCTCCACAAACGCA
AGCTTTCTAGACC
BO15919.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-PA | 684 | CG31274-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
CG31274-PB | 843 | CG31274-RB | 160..840 | 17..697 | 3405 | 100 | Plus |
CG31447-PA | 843 | MESK4-RA | 160..840 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-RB | 1399 | CG31274-RB | 281..961 | 17..697 | 3405 | 100 | Plus |
MESK4-RB | 1488 | CG31447-RB | 271..951 | 17..697 | 3405 | 100 | Plus |
MESK4-RA | 1390 | CG31447-RA | 271..951 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16989518..16989882 | 333..697 | 1825 | 100 | Plus |
3R | 32079331 | 3R | 16993730..16994094 | 333..697 | 1825 | 100 | Plus |
3R | 32079331 | 3R | 16989138..16989455 | 17..334 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 16993350..16993667 | 17..334 | 1590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:53:25 has no hits.
BO15919.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:27 Download gff for
BO15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-PA | 1..684 | 17..700 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:09 Download gff for
BO15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31447-PA | 160..843 | 17..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:37 Download gff for
BO15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RB | 271..956 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:01 Download gff for
BO15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RA | 271..956 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:01 Download gff for
BO15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16989138..16989454 | 17..333 | 100 | -> | Plus |
3R | 16989519..16989887 | 334..702 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:37 Download gff for
BO15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12814860..12815176 | 17..333 | 100 | -> | Plus |
arm_3R | 12815241..12815609 | 334..702 | 99 | | Plus |
BO15919.complete Sequence
715 bp (715 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633629
> BO15919.complete
GAAGTTATCAGTCGACATGATTACGCCGAATCCGTATTCCTTTAGTGGCA
ACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAGC
ATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGAC
AATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTCG
ATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCCTTTTTCGAG
GATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGACATAAACAC
TTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGATA
TAGCAAATATAACCGATTGGATACACCGCATCGAACGGCACTGTCCTGCG
CTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCGG
GGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAAT
ATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTCT
TCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTCC
ACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAAAGTATTCCA
GAAAATCGCACAGCGGACGGATGTTTGGCAACGGCTCCTCCACAAACGCA
AGCTTTCTAGACCAT
BO15919.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-RB | 843 | CG31274-PB | 160..840 | 17..697 | 3405 | 100 | Plus |
MESK4-RB | 843 | CG31447-PB | 160..840 | 17..697 | 3405 | 100 | Plus |
MESK4-RA | 843 | CG31447-PA | 160..840 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-RB | 1399 | CG31274-RB | 281..961 | 17..697 | 3405 | 100 | Plus |
MESK4-RB | 1488 | CG31447-RB | 271..951 | 17..697 | 3405 | 100 | Plus |
MESK4-RA | 1390 | CG31447-RA | 271..951 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16993730..16994094 | 333..697 | 1825 | 100 | Plus |
3R | 32079331 | 3R | 16989518..16989882 | 333..697 | 1825 | 100 | Plus |
3R | 32079331 | 3R | 16989138..16989455 | 17..334 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 16993350..16993667 | 17..334 | 1590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:55:21 has no hits.
BO15919.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:35 Download gff for
BO15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-RB | 160..843 | 17..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:08:42 Download gff for
BO15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-RB | 160..845 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:57 Download gff for
BO15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RB | 271..951 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:35 Download gff for
BO15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-RB | 160..845 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:13 Download gff for
BO15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RA | 271..951 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:13 Download gff for
BO15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16989138..16989454 | 17..333 | 100 | -> | Plus |
3R | 16989519..16989882 | 334..699 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:57 Download gff for
BO15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12814860..12815176 | 17..333 | 100 | -> | Plus |
arm_3R | 12815241..12815604 | 334..699 | 99 | | Plus |
BO15919.pep Sequence
Translation from 16 to 715
> BO15919.pep
MITPNPYSFSGNISISSCPSEDVSFSESILEDNGRISLAYENLKTIPRRL
ADKFAAQTKFLDLSHNDFRNLRFLSFFEDLDTLILDRNVNLDINTFPYLP
SLRILWINNCDIANITDWIHRIERHCPALDQLSCMGNPGIRTVFGGQGPR
EYILQVLPQLKYLDGLPTSRNAAYATLSSSQGQGPDSTSNSEKPPLASAF
TFKDIIRPKYSRKSHSGRMFGNGSSTNASFLDH
BO15919.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-PB | 280 | CG31274-PB | 54..280 | 1..227 | 1193 | 100 | Plus |
MESK4-PB | 280 | CG31447-PB | 54..280 | 1..227 | 1193 | 100 | Plus |
MESK4-PA | 280 | CG31447-PA | 54..280 | 1..227 | 1193 | 100 | Plus |
CG31076-PB | 182 | CG31076-PB | 7..153 | 32..164 | 162 | 32.4 | Plus |