BO15926.complete Sequence
1255 bp (1255 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633631
> BO15926.complete
GAAGTTATCAGTCGACATGTCACTGCGTGCGCTTCGGAAAAGAGAAACAG
GCACTGGCTACGGCAACAATAACAACCATTTAGCAGCACCAGCAAGAACT
TCACAAGCAACGCTCTTTAAGAAGGCCAGCACAGCAATAACGTCACCGAA
GAAATCGTTGCTCAAAACTGGGAACTCCGTCTGCGGATTGGACAAACGGA
GCCAGTTCCGGGAGCAGAAGCTACTCGGTCGCAAGTGCCACTCGAGTCCT
GACCTACGACAAATCGGAAAATACCAAAACAACAGCCTGTTGCGCAGCAA
ATCGGAGGGGGATGTTAGTTTAATCCTGGCCAGTAACTCCGGTGCTCCAT
TGACGGTGGCAAACGCCAAGTCAGAGGTTTGCCTGCAAAGGATTAGCTCT
CACAGTTACGAACAATCTCCGAGAACGCCGATAAACAAAAGCGAAATGCT
CGGCGGTGCACGTTCCCATCGCGACCTGACGCAGTCGTCCTATGGCAACC
AGGCAGGTGGACATTCCGTGGATTTGGAATCCAGGTCTAGAACTCCTCGG
CGGATGAGCGAGTGCAGCTTGGGCTACAGCCAATCCAGCTCCCGGCACAC
TGGCTCCAACTCTATGTTCGCCAGCCAGATGACTCTCTCCTCGGGATCGG
TGGTGCCGCCCGTGGACCCCAACGCTGTGCTAAGGGTGCCCATTATTGGT
TACGAGGTTATGGAGGAACGTGCGCGTTTCACTGCCTACAAGCTGCGAGT
CGAGAATCCGGAGACCAACGACTATTGGCTTGTTATGCGACGCTACACCG
ACTTCGTGCGGCTCAATAGCAAGCTAAAGCAGGCTTTTCCCAACCTTACG
CTCATGCTGCCCCGGAAGAAGCTTTTCGGCGATAACTTCAATGCCGTCTT
TCTCGACAATCGGGTGCAAGGTCTGCAGATCTTCGTCAACTCAGTGATGG
CCAAGGAGGAGCTGCGAAAGTGCAAACTGGTTCGGGAGTTCTTCTGCCTG
GACGAGCCGCCTTCGTACTCTGAATCCATGGAGGAGTGTCGTGCAATTTT
CGAAGCTCAGGAGGAGACAATTGAGCATCTGAAGCTGCAGATTCGAAATA
AAAACGATCTCATTCTCAGTTTGCAGCAGAAACTGCGCGAGGAGATGAAC
GAGAAGGAGCAGCTGAGAGAAGCTATGAAAAATATGGAGCTTAATTGCTC
GCACTGCTCCTCAGCTAGCGACAGTTTGGGAATAAAGGCAAGCTTTCTAG
ACCAT
BO15926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx16-RA | 1224 | CG6410-PA | 1..1221 | 17..1237 | 6090 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx16-RA | 1699 | CG6410-RA | 124..1344 | 17..1237 | 6090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17725698..17726724 | 1043..17 | 5120 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17725502..17725638 | 1179..1043 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 17725385..17725442 | 1237..1180 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:19:09 has no hits.
BO15926.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:49 Download gff for
BO15926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6410-RA | 1..1224 | 17..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:24 Download gff for
BO15926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6410-RA | 73..1305 | 10..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:23 Download gff for
BO15926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx16-RA | 124..1344 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:49 Download gff for
BO15926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6410-RA | 73..1305 | 10..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:14 Download gff for
BO15926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx16-RA | 124..1344 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:14 Download gff for
BO15926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17725383..17725442 | 1180..1239 | 96 | <- | Minus |
| 2R | 17725502..17725638 | 1043..1179 | 100 | <- | Minus |
| 2R | 17725699..17726724 | 17..1042 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:23 Download gff for
BO15926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13612888..13612947 | 1180..1239 | 96 | <- | Minus |
| arm_2R | 13613007..13613143 | 1043..1179 | 100 | <- | Minus |
| arm_2R | 13613204..13614229 | 17..1042 | 99 | | Minus |
BO15926.pep Sequence
Translation from 16 to 1255
> BO15926.pep
MSLRALRKRETGTGYGNNNNHLAAPARTSQATLFKKASTAITSPKKSLLK
TGNSVCGLDKRSQFREQKLLGRKCHSSPDLRQIGKYQNNSLLRSKSEGDV
SLILASNSGAPLTVANAKSEVCLQRISSHSYEQSPRTPINKSEMLGGARS
HRDLTQSSYGNQAGGHSVDLESRSRTPRRMSECSLGYSQSSSRHTGSNSM
FASQMTLSSGSVVPPVDPNAVLRVPIIGYEVMEERARFTAYKLRVENPET
NDYWLVMRRYTDFVRLNSKLKQAFPNLTLMLPRKKLFGDNFNAVFLDNRV
QGLQIFVNSVMAKEELRKCKLVREFFCLDEPPSYSESMEECRAIFEAQEE
TIEHLKLQIRNKNDLILSLQQKLREEMNEKEQLREAMKNMELNCSHCSSA
SDSLGIKASFLDH
BO15926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx16-PA | 407 | CG6410-PA | 1..407 | 1..407 | 2076 | 100 | Plus |
| CG8726-PB | 646 | CG8726-PB | 13..130 | 215..340 | 159 | 35.4 | Plus |
