Clone BO15928 Report

Search the DGRC for BO15928

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptpio-RB
Protein status:BO15928.pep: validated full length
Sequenced Size:1420

Clone Sequence Records

BO15928.complete Sequence

1420 bp (1420 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633632

> BO15928.complete
GAAGTTATCAGTCGACATGAAGACAGGCACTCGAATGGACGCTTTCCACA
CGGCGCTGCACTTAATCACAATCGCAGCTCTGACGACGCACGCGGCGCAG
ATTCCAACGGCAATGAAAGATGCCCAGAGCTCGCTGAGCGATGCGATTGC
GGCGGCGGAGGCGGAGGTGGCCTCCACCTCTAAGCCGGCGGTGGAGCCGA
GTGTGCGGATCAAGTGCCTCTCCGGATCGATGCTGATCACCATTAAAGAC
GCTCCTCCGAACCACGAAACGGGCCTGTTCAGCGGCATGATCTACCCGAA
AGGCCTGTCCAAGAACTCCACCTGCTTGAGCGAGTACAGAGATCATGTGG
GCTCCCTGCGATATAAGCTGCCCCTGAGATCTTGCAACACGATGCCGAAG
GAAACGGATGACGGTGGCATTGAGTTCTTCAACACCATCGTGCTGCAGCC
CCACCTAAAGCTCATCACGGACCTGGGACGTGGCTACCACGTCCGCTGTG
CGTACAAGAGTCGGGACGCAGCCATGAAGCCCAAAAAGTACCTGCGCAAG
CACGCCCAGAAGCCACAGGCCTTCCGCAGCGATGATCGGCGGGAGTACGG
ACGATCGCTGGACAAGCAGCAGGACGACGACCTGGACGAGGAGGATGTCT
ACGATGCGAATGCCCCGACGCAGGAGGAGGACGTGACCAACAACGAGATC
CCCATGCCAGGCTGCCACATGAAGATCTACAACGACGAGCACAAAATTGC
CGACGATGTGAAGATCGGTGATCCTCTGACCATTGTCATCAGCATCGATA
AGCAGAAGGTTTACGGACTCCATGTCACGGACTGCATAGTTCGCGATGGT
CTGGGCTGGGGAGAGCAGCGACTGGTGGGCGAAGATGGCTGCCCCATGGA
CAACGAGATCATGGGTCAGTTCAACTACACCCAAGACCGATTGGCAGCCA
ACGTGACCTTTCCGGCGCACAAGTTCCCCTACACCACCTCCGTGTACTAC
CAGTGCAACGTGCGACTGTGCGCCCTGGAGGACCCCACCTGCCAGGAGGC
TCCCCAGTGCAGCGGCAAGAGGCCCAAGCGCCAAGCCGCCGCGGACAGCA
AGGAGGAGGACGGTCTGCCCGCCACCATTGAGGTCTTCTCTGGCCTATAT
GTGAATGAGAACGAAAACGCCAACGACAGCGACGAGGACGCGGTTTACAA
GGAGAAGACTCTGGACGACGCCCTGTGCGTTTCGCAACGCACCTTCGCCA
TAGCCATTGCCATCGCCGGATTGATCCTTATGCTAGCCGTGGTCGCCGCC
GTTCTCTGCATCATGGCGCGCAGGAGCACCAAGACGGTGTCCAACTCTGG
CAGCTCCATCTACAGTGGACCCTACACGAACACCGCCTTCTCGCACAGCA
GCGCAAGCTTTCTAGACCAT

BO15928.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
pio-RE 1389 CG3541-PE 1..1386 17..1402 6930 100 Plus
pio-RD 1389 CG3541-PD 1..1386 17..1402 6930 100 Plus
pio-RB 1389 CG3541-PB 1..1386 17..1402 6930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
pio-RE 2374 CG3541-RE 88..1474 16..1402 6935 100 Plus
pio-RD 3128 CG3541-RD 842..2228 16..1402 6935 100 Plus
pio-RB 2656 CG3541-RB 370..1756 16..1402 6935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24595857..24596339 406..888 2415 100 Plus
2R 25286936 2R 24596395..24596714 888..1207 1600 100 Plus
2R 25286936 2R 24591952..24592174 117..339 1115 100 Plus
2R 25286936 2R 24596766..24596962 1206..1402 985 100 Plus
2R 25286936 2R 24592230..24592300 337..407 355 100 Plus
2R 25286936 2R 24588754..24588805 16..67 260 100 Plus
2R 25286936 2R 24589377..24589425 68..116 245 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:32:00 has no hits.

BO15928.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:50 Download gff for BO15928.complete
Subject Subject Range Query Range Percent Splice Strand
pio-RB 1..1389 17..1406 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:26 Download gff for BO15928.complete
Subject Subject Range Query Range Percent Splice Strand
pio-RB 337..1734 12..1408 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:12 Download gff for BO15928.complete
Subject Subject Range Query Range Percent Splice Strand
pio-RB 371..1756 17..1404 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:50 Download gff for BO15928.complete
Subject Subject Range Query Range Percent Splice Strand
pio-RB 337..1734 12..1408 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:42 Download gff for BO15928.complete
Subject Subject Range Query Range Percent Splice Strand
pio-RB 371..1756 17..1404 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:42 Download gff for BO15928.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24588755..24588805 17..67 100 -> Plus
2R 24589377..24589425 68..116 100 -> Plus
2R 24591952..24592174 117..339 100 -> Plus
2R 24592233..24592299 340..406 100 -> Plus
2R 24595858..24596339 407..888 100 -> Plus
2R 24596396..24596714 889..1207 100 -> Plus
2R 24596768..24596962 1208..1404 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:12 Download gff for BO15928.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20476278..20476328 17..67 100 -> Plus
arm_2R 20476900..20476948 68..116 100 -> Plus
arm_2R 20479475..20479697 117..339 100 -> Plus
arm_2R 20479756..20479822 340..406 100 -> Plus
arm_2R 20483381..20483862 407..888 100 -> Plus
arm_2R 20483919..20484237 889..1207 100 -> Plus
arm_2R 20484291..20484485 1208..1404 98   Plus

BO15928.pep Sequence

Translation from 16 to 1420

> BO15928.pep
MKTGTRMDAFHTALHLITIAALTTHAAQIPTAMKDAQSSLSDAIAAAEAE
VASTSKPAVEPSVRIKCLSGSMLITIKDAPPNHETGLFSGMIYPKGLSKN
STCLSEYRDHVGSLRYKLPLRSCNTMPKETDDGGIEFFNTIVLQPHLKLI
TDLGRGYHVRCAYKSRDAAMKPKKYLRKHAQKPQAFRSDDRREYGRSLDK
QQDDDLDEEDVYDANAPTQEEDVTNNEIPMPGCHMKIYNDEHKIADDVKI
GDPLTIVISIDKQKVYGLHVTDCIVRDGLGWGEQRLVGEDGCPMDNEIMG
QFNYTQDRLAANVTFPAHKFPYTTSVYYQCNVRLCALEDPTCQEAPQCSG
KRPKRQAAADSKEEDGLPATIEVFSGLYVNENENANDSDEDAVYKEKTLD
DALCVSQRTFAIAIAIAGLILMLAVVAAVLCIMARRSTKTVSNSGSSIYS
GPYTNTAFSHSSASFLDH

BO15928.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
pio-PE 462 CG3541-PE 1..462 1..462 2417 100 Plus
pio-PD 462 CG3541-PD 1..462 1..462 2417 100 Plus
pio-PB 462 CG3541-PB 1..462 1..462 2417 100 Plus
pio-PC 156 CG3541-PC 1..130 1..130 661 100 Plus
dp-PM 8579 CG33196-PM 8200..8551 61..442 229 23.7 Plus