BO15928.complete Sequence
1420 bp (1420 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633632
> BO15928.complete
GAAGTTATCAGTCGACATGAAGACAGGCACTCGAATGGACGCTTTCCACA
CGGCGCTGCACTTAATCACAATCGCAGCTCTGACGACGCACGCGGCGCAG
ATTCCAACGGCAATGAAAGATGCCCAGAGCTCGCTGAGCGATGCGATTGC
GGCGGCGGAGGCGGAGGTGGCCTCCACCTCTAAGCCGGCGGTGGAGCCGA
GTGTGCGGATCAAGTGCCTCTCCGGATCGATGCTGATCACCATTAAAGAC
GCTCCTCCGAACCACGAAACGGGCCTGTTCAGCGGCATGATCTACCCGAA
AGGCCTGTCCAAGAACTCCACCTGCTTGAGCGAGTACAGAGATCATGTGG
GCTCCCTGCGATATAAGCTGCCCCTGAGATCTTGCAACACGATGCCGAAG
GAAACGGATGACGGTGGCATTGAGTTCTTCAACACCATCGTGCTGCAGCC
CCACCTAAAGCTCATCACGGACCTGGGACGTGGCTACCACGTCCGCTGTG
CGTACAAGAGTCGGGACGCAGCCATGAAGCCCAAAAAGTACCTGCGCAAG
CACGCCCAGAAGCCACAGGCCTTCCGCAGCGATGATCGGCGGGAGTACGG
ACGATCGCTGGACAAGCAGCAGGACGACGACCTGGACGAGGAGGATGTCT
ACGATGCGAATGCCCCGACGCAGGAGGAGGACGTGACCAACAACGAGATC
CCCATGCCAGGCTGCCACATGAAGATCTACAACGACGAGCACAAAATTGC
CGACGATGTGAAGATCGGTGATCCTCTGACCATTGTCATCAGCATCGATA
AGCAGAAGGTTTACGGACTCCATGTCACGGACTGCATAGTTCGCGATGGT
CTGGGCTGGGGAGAGCAGCGACTGGTGGGCGAAGATGGCTGCCCCATGGA
CAACGAGATCATGGGTCAGTTCAACTACACCCAAGACCGATTGGCAGCCA
ACGTGACCTTTCCGGCGCACAAGTTCCCCTACACCACCTCCGTGTACTAC
CAGTGCAACGTGCGACTGTGCGCCCTGGAGGACCCCACCTGCCAGGAGGC
TCCCCAGTGCAGCGGCAAGAGGCCCAAGCGCCAAGCCGCCGCGGACAGCA
AGGAGGAGGACGGTCTGCCCGCCACCATTGAGGTCTTCTCTGGCCTATAT
GTGAATGAGAACGAAAACGCCAACGACAGCGACGAGGACGCGGTTTACAA
GGAGAAGACTCTGGACGACGCCCTGTGCGTTTCGCAACGCACCTTCGCCA
TAGCCATTGCCATCGCCGGATTGATCCTTATGCTAGCCGTGGTCGCCGCC
GTTCTCTGCATCATGGCGCGCAGGAGCACCAAGACGGTGTCCAACTCTGG
CAGCTCCATCTACAGTGGACCCTACACGAACACCGCCTTCTCGCACAGCA
GCGCAAGCTTTCTAGACCAT
BO15928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pio-RE | 1389 | CG3541-PE | 1..1386 | 17..1402 | 6930 | 100 | Plus |
pio-RD | 1389 | CG3541-PD | 1..1386 | 17..1402 | 6930 | 100 | Plus |
pio-RB | 1389 | CG3541-PB | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pio-RE | 2374 | CG3541-RE | 88..1474 | 16..1402 | 6935 | 100 | Plus |
pio-RD | 3128 | CG3541-RD | 842..2228 | 16..1402 | 6935 | 100 | Plus |
pio-RB | 2656 | CG3541-RB | 370..1756 | 16..1402 | 6935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24595857..24596339 | 406..888 | 2415 | 100 | Plus |
2R | 25286936 | 2R | 24596395..24596714 | 888..1207 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 24591952..24592174 | 117..339 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 24596766..24596962 | 1206..1402 | 985 | 100 | Plus |
2R | 25286936 | 2R | 24592230..24592300 | 337..407 | 355 | 100 | Plus |
2R | 25286936 | 2R | 24588754..24588805 | 16..67 | 260 | 100 | Plus |
2R | 25286936 | 2R | 24589377..24589425 | 68..116 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:32:00 has no hits.
BO15928.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:50 Download gff for
BO15928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 1..1389 | 17..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:26 Download gff for
BO15928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 337..1734 | 12..1408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:12 Download gff for
BO15928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 371..1756 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:50 Download gff for
BO15928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 337..1734 | 12..1408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:42 Download gff for
BO15928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 371..1756 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:42 Download gff for
BO15928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24588755..24588805 | 17..67 | 100 | -> | Plus |
2R | 24589377..24589425 | 68..116 | 100 | -> | Plus |
2R | 24591952..24592174 | 117..339 | 100 | -> | Plus |
2R | 24592233..24592299 | 340..406 | 100 | -> | Plus |
2R | 24595858..24596339 | 407..888 | 100 | -> | Plus |
2R | 24596396..24596714 | 889..1207 | 100 | -> | Plus |
2R | 24596768..24596962 | 1208..1404 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:12 Download gff for
BO15928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20476278..20476328 | 17..67 | 100 | -> | Plus |
arm_2R | 20476900..20476948 | 68..116 | 100 | -> | Plus |
arm_2R | 20479475..20479697 | 117..339 | 100 | -> | Plus |
arm_2R | 20479756..20479822 | 340..406 | 100 | -> | Plus |
arm_2R | 20483381..20483862 | 407..888 | 100 | -> | Plus |
arm_2R | 20483919..20484237 | 889..1207 | 100 | -> | Plus |
arm_2R | 20484291..20484485 | 1208..1404 | 98 | | Plus |
BO15928.pep Sequence
Translation from 16 to 1420
> BO15928.pep
MKTGTRMDAFHTALHLITIAALTTHAAQIPTAMKDAQSSLSDAIAAAEAE
VASTSKPAVEPSVRIKCLSGSMLITIKDAPPNHETGLFSGMIYPKGLSKN
STCLSEYRDHVGSLRYKLPLRSCNTMPKETDDGGIEFFNTIVLQPHLKLI
TDLGRGYHVRCAYKSRDAAMKPKKYLRKHAQKPQAFRSDDRREYGRSLDK
QQDDDLDEEDVYDANAPTQEEDVTNNEIPMPGCHMKIYNDEHKIADDVKI
GDPLTIVISIDKQKVYGLHVTDCIVRDGLGWGEQRLVGEDGCPMDNEIMG
QFNYTQDRLAANVTFPAHKFPYTTSVYYQCNVRLCALEDPTCQEAPQCSG
KRPKRQAAADSKEEDGLPATIEVFSGLYVNENENANDSDEDAVYKEKTLD
DALCVSQRTFAIAIAIAGLILMLAVVAAVLCIMARRSTKTVSNSGSSIYS
GPYTNTAFSHSSASFLDH
BO15928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pio-PE | 462 | CG3541-PE | 1..462 | 1..462 | 2417 | 100 | Plus |
pio-PD | 462 | CG3541-PD | 1..462 | 1..462 | 2417 | 100 | Plus |
pio-PB | 462 | CG3541-PB | 1..462 | 1..462 | 2417 | 100 | Plus |
pio-PC | 156 | CG3541-PC | 1..130 | 1..130 | 661 | 100 | Plus |
dp-PM | 8579 | CG33196-PM | 8200..8551 | 61..442 | 229 | 23.7 | Plus |