BO15931.complete Sequence
1411 bp (1411 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633633
> BO15931.complete
GAAGTTATCAGTCGACATGGCCAATCGCTCCAGCCAGCGGGACCGAGAGT
TCAATCGTGATAATACTTACAATAACAATCGCGACAATCGAGACCATAAT
CGGGACAATCGCGATAATCGGGAGAATCGCAGTAATTTCCAAAACTATCG
CAATCGTGACAGGGATCGCGATAGGCAGCGTCAGGTGCCCACGGAACCTC
CGTTCATCGCTTATGTGGGCAACCTTCCCAAGGGTCTCGTCCAGGGCGAT
GTGATGAAGATATTTTCGGACTTCGAGGTGAAGAATGTGCGCCTGATCAA
GGACCGTGAGACGGATGAATTCAAAGGCTATGGCTACGTAGAGTTCGAGA
CTCTGGCACAACTGAAGAGTGCTCTCAACTGCAACGGACGCATCAAGCTA
GACAACTTTTCGGCCCCCCTGCGTATCGATATAGCCGACCATCGCCGGCA
GAACCCGGGTGCTCCCAGCGGTGTTGGCGGAGCTCCTCCAGCCGGAGTGG
GCCACGAAAGAGGTGGTGGCGTCGGAAGAGGAGGCAGCACGGGTGCAGCA
AACGGTAACAATCCCTACTACCAGAGGCGCAACTATCGGCGGGACGACAG
TGTGGGATCCCATCAGTTTAGAAGGAGGGAACCGCGCAGCAACAGCAGCA
ACCACCAAATGTCCAATAGCAGCCCCACACAAAGCACCACGTCCATTAAT
TACAACCGCACCACTCGAGGTGGTTTCAATAGCCGTGTTGCTGTAGGTGG
AAATGGCAATCGTTACCAAGGAGGAGCTCCACGTAACTTCAATGACCGCG
AGGATCAGCAATCGACCGGCAGCGGAGGATTCCAACGCAATCGCACCTAC
AACTTTAACCGATCCATGAACAACAGCGTCGGCGGAGGAGGTGCTGGAGT
AGGTAGGGGCGGGCATCCGCAGCGGAACTTCAATGGAAATGGAGGCGGCG
GTGGATTCGGGGTCGTAAATGGAGGCGGCAACTATACCAATTTTGTGCAG
AATCGCAATCGCGATCGCCGTGGACACTACAATCCAAATCACTCTGGAAG
TTCTGGCGGCTACAATAACAATGGGAACAACACCTTTGGCGGGGAGAACA
ATCATCCTGTGCACGGAGCATCCGAGTCGGCATCATCTGGAACAGGTCCT
AGTTCGAGCAATCAATTCGCCGTACGCGACGATGATGATCGGCCCAAGCT
AGTGCTCAAGCCCAGGACTGTGACTGCACCCATCAACTCTCTGGCTGAAA
CCAAACAGGCTGCTCTCATCTTCGGAAAGGCCAAGCCCCGTGATGATAGC
TCCACGCCCGTCTCCTCGCCACGCCAGGATTTGGACGCAGGATCGTCAGG
TGCTCCAAGTGATCATGATCATGATCCAGGCTTGGGCGACAACGCAAGCT
TTCTAGACCAT
BO15931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1340-RC | 1380 | CG1340-PC | 1..1377 | 17..1393 | 6885 | 100 | Plus |
| CG1340-RA | 1380 | CG1340-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
| Rbp2-RC | 1077 | CG4429-PC | 64..238 | 182..356 | 350 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1340-RC | 1843 | CG1340-RC | 223..1600 | 16..1393 | 6890 | 100 | Plus |
| CG1340-RA | 1851 | CG1340-RA | 223..1600 | 16..1393 | 6890 | 100 | Plus |
| Rbp2-RC | 2640 | CG4429-RC | 97..271 | 182..356 | 350 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30726309..30727154 | 16..861 | 4230 | 100 | Plus |
| 3R | 32079331 | 3R | 30727214..30727746 | 861..1393 | 2665 | 100 | Plus |
| X | 23542271 | X | 16449905..16450079 | 182..356 | 350 | 80 | Plus |
Blast to na_te.dros performed 2014-11-26 15:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6882 | 630..713 | 123 | 64.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3370 | 628..705 | 118 | 65.9 | Plus |
BO15931.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:52 Download gff for
BO15931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 1..1380 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:28 Download gff for
BO15931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 219..1600 | 10..1393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:53 Download gff for
BO15931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 224..1600 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:52 Download gff for
BO15931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 219..1600 | 10..1393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:17 Download gff for
BO15931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 224..1600 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:17 Download gff for
BO15931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30726310..30727154 | 17..861 | 100 | -> | Plus |
| 3R | 30727215..30727746 | 862..1395 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:53 Download gff for
BO15931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26552032..26552876 | 17..861 | 100 | -> | Plus |
| arm_3R | 26552937..26553468 | 862..1395 | 99 | | Plus |
BO15931.pep Sequence
Translation from 16 to 1411
> BO15931.pep
MANRSSQRDREFNRDNTYNNNRDNRDHNRDNRDNRENRSNFQNYRNRDRD
RDRQRQVPTEPPFIAYVGNLPKGLVQGDVMKIFSDFEVKNVRLIKDRETD
EFKGYGYVEFETLAQLKSALNCNGRIKLDNFSAPLRIDIADHRRQNPGAP
SGVGGAPPAGVGHERGGGVGRGGSTGAANGNNPYYQRRNYRRDDSVGSHQ
FRRREPRSNSSNHQMSNSSPTQSTTSINYNRTTRGGFNSRVAVGGNGNRY
QGGAPRNFNDREDQQSTGSGGFQRNRTYNFNRSMNNSVGGGGAGVGRGGH
PQRNFNGNGGGGGFGVVNGGGNYTNFVQNRNRDRRGHYNPNHSGSSGGYN
NNGNNTFGGENNHPVHGASESASSGTGPSSSNQFAVRDDDDRPKLVLKPR
TVTAPINSLAETKQAALIFGKAKPRDDSSTPVSSPRQDLDAGSSGAPSDH
DHDPGLGDNASFLDH
BO15931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1340-PC | 459 | CG1340-PC | 1..459 | 1..459 | 2477 | 100 | Plus |
| CG1340-PA | 459 | CG1340-PA | 1..459 | 1..459 | 2477 | 100 | Plus |
| Rbp2-PC | 358 | CG4429-PC | 4..343 | 38..427 | 619 | 41.4 | Plus |
| Rbp2-PD | 388 | CG4429-PD | 4..373 | 38..427 | 609 | 40.7 | Plus |
| Rbp2-PA | 325 | CG4429-PA | 4..310 | 38..427 | 582 | 39.4 | Plus |
