BO15934.complete Sequence
1993 bp assembled on 2006-10-11
GenBank Submission: FJ633634
> BO15934.complete
GAAGTTATCAGTCGACATGGCTCACACACACCTGGGACGCGCCGTGAAAA
ACATTGAGGCGCCACGCCCGTTGAAGACACAATCGCGATCGTCGTTGAAG
AACAGCTACCTGGTGATCGAGGAGCTAATCCAGTTGATAGACAACGTGAC
CGTCGGTCTTCAGTCGTGCAACACCACGCCGGAATCGATCACGCTGCTCC
TGCACAACCTCCGGGTGCATGGACCGCAACTGGAGGCGGTGTCCAAGGAT
ACACTGGACCGGGCCTTCGTCGTTTTCCGCAACGCTTCGCAGGACGAACG
GCTGAATATAACGACGCGCCTCAAGCTGCTCGAACTCATCGAGCTGCGCG
CCAAGAGCTGGGACAATGACGACACAATCGCGTACTACAAGTCCAAGCAG
CAGATCTCCAACGTGGAGCTGCCTTCGGAATACCAGTACGATGCCGGCGT
GCAGCCTGGCGCCTTCAGCACCTCCCCCACATTCGGCGTCAGCGGCGGTG
TTGGTGGCGTTAACGATGGAGCCGCAGCCGCCGCTGCCGCCGTCTTCAAT
GCAGCATCTGCAGCTGCAGCCGCCCAAGCTGCGGCCATTGCGGCCGTGGG
CACATCCAACCAGCAGCACATGCTGCTGCCGCCCGGTGAGGTCATTCGTA
ATTCGGGCAAGTTCCCCAAACCGACCAAGATTCCTGGCAAGACGTACTGC
AAGGACGAGGTCGTGATTCGCAATGCTGACTCCGGCAAAGTAATGGGCAT
CAAGGGGCGTCGCGTGCACATGATCGAGGAGCTAAGCGAAACCATTATAT
CGTTTCAAAGAGTCAACCCGGGTGCCAAGGAGCGTTTGGTGCAGATTACT
GGTCCAGCTGAGGATAAAATTAACTATGCCAAACAACTTATGGAGGACAC
CATTCGTCGGAACGCCTCGCCGGTGCGCCTGGAACCCGCTCCTGCCGTTG
GAGGATCCTGCTCCTCGCTTAACTCGTCCAACTCGGACGACGCCATTGTG
CAACCAAGAACGCCAACCGGAAGCAGTTTGGCCAACCGGCTAAGCTTTAA
CTCGGCCCAAAACTTCATGACCGCCACAGCTGCTGCACAGCAGATCTCGC
AGCAGATGCACCACCAAACGCATCACCTGCAGCACCAACAGCAGCAGCAG
GTCGCCGCAGTAGCCGCCGCAGCAGCAGCGGCGGCACATGCTCAGGCGAC
AGCCGCTGCCGGTAAAGTCTTGCGTCCCAATCAACAGCTGCTAATGCACT
CATATTCCACAAACGATGCTTCCGTAGGTGAATACAAGTTCACGGTCAAC
GTGGGCCAGCACCTGATCAAGATCACCGGCGACTGCTGCGAACTAGTGCG
CGTGGCCAAACTCGTGCTCGATGACTATTTTAGCAGCTCGGAGTTTCTGG
CATCCATTGAGGCTGGCGCCGCCTTCGACGGCACTTCGCTGGTGACCACG
CCATCGACTCCGCTTCCCGGAGCCGGGCCGCCGCAATTTTGGCTGCCCGG
CACGGACAGTGGCATTGGACTGAATTGCGTTGTTTCCTCGTCAGCGAACA
ACAATGGTGAAGGCGACGACGAGGTGTTCGCTGAGCCCAGCAATGGAGGA
TCATCGACTAGCAATCAGAATGGACTGGCCAGATCGCGTCGCAGCCACTT
TTCGCGCAAGGAGTCCACGCCGGAGACCAAGGGCGCTCGGGAAAAGGGTG
ACTTGGACGATTTGGCAGGCACCAATTCCTTGAAAAGCAATGCATCTCGC
GTTTCTTACGATATTGAACACTTGCTCTACTACTCCATGAGTCCGCACTC
GTGGACCCTGCCCACCGACTGGCAAAAGATGCAGGAGACAGCGCCCTCGA
TTCTGCGCAACAAGGATCTGCAGGATGAGAGCCAGCGCTTCGATGGTGAT
AAGTATCTGGCCAGCATTAAGACGGCCGCCAAGCGAGACATTGTGGCTGC
CGATGAGGTCGAGACTCTGGACGAAGCAAGCTTTCTAGACCAT
BO15934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-RE | 1962 | CG2950-PE | 1..1959 | 17..1975 | 9795 | 100 | Plus |
| mxt-RC | 1962 | CG2950-PC | 1..1959 | 17..1975 | 9795 | 100 | Plus |
| mxt-RA | 1962 | CG2950-PA | 1..1959 | 17..1975 | 9795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-RE | 2351 | CG2950-RE | 246..2204 | 17..1975 | 9795 | 100 | Plus |
| mxt-RC | 2328 | CG2950-RC | 223..2181 | 17..1975 | 9795 | 100 | Plus |
| mxt-RA | 2336 | CG2950-RA | 231..2189 | 17..1975 | 9795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4844166..4844646 | 1354..874 | 2405 | 100 | Minus |
| 2L | 23513712 | 2L | 4845642..4846043 | 418..17 | 2010 | 100 | Minus |
| 2L | 23513712 | 2L | 4843718..4844111 | 1745..1352 | 1970 | 100 | Minus |
| 2L | 23513712 | 2L | 4845254..4845577 | 740..417 | 1620 | 100 | Minus |
| 2L | 23513712 | 2L | 4843539..4843658 | 1865..1746 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 4842237..4842349 | 1975..1863 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 4845087..4845162 | 812..737 | 380 | 100 | Minus |
| 2L | 23513712 | 2L | 4844712..4844774 | 873..811 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:33:43 has no hits.
BO15934.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:23 Download gff for
BO15934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RC | 1..1962 | 17..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:23 Download gff for
BO15934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RC | 221..2191 | 14..1985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:02 Download gff for
BO15934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RA | 231..2189 | 17..1977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:24 Download gff for
BO15934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RC | 221..2191 | 14..1985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:00 Download gff for
BO15934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mxt-RA | 231..2189 | 17..1977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:00 Download gff for
BO15934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4842235..4842347 | 1865..1977 | 98 | <- | Minus |
| 2L | 4843540..4843658 | 1746..1864 | 100 | <- | Minus |
| 2L | 4843718..4844111 | 1352..1745 | 100 | <- | Minus |
| 2L | 4844169..4844646 | 874..1351 | 100 | <- | Minus |
| 2L | 4844712..4844772 | 813..873 | 100 | <- | Minus |
| 2L | 4845087..4845158 | 741..812 | 100 | <- | Minus |
| 2L | 4845254..4845575 | 419..740 | 100 | <- | Minus |
| 2L | 4845642..4846043 | 17..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:02 Download gff for
BO15934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4845642..4846043 | 17..418 | 100 | | Minus |
| arm_2L | 4842235..4842347 | 1865..1977 | 98 | <- | Minus |
| arm_2L | 4843540..4843658 | 1746..1864 | 100 | <- | Minus |
| arm_2L | 4843718..4844111 | 1352..1745 | 100 | <- | Minus |
| arm_2L | 4844169..4844646 | 874..1351 | 100 | <- | Minus |
| arm_2L | 4844712..4844772 | 813..873 | 100 | <- | Minus |
| arm_2L | 4845087..4845158 | 741..812 | 100 | <- | Minus |
| arm_2L | 4845254..4845575 | 419..740 | 100 | <- | Minus |
BO15934.pep Sequence
Translation from 16 to 1993
> BO15934.pep
MAHTHLGRAVKNIEAPRPLKTQSRSSLKNSYLVIEELIQLIDNVTVGLQS
CNTTPESITLLLHNLRVHGPQLEAVSKDTLDRAFVVFRNASQDERLNITT
RLKLLELIELRAKSWDNDDTIAYYKSKQQISNVELPSEYQYDAGVQPGAF
STSPTFGVSGGVGGVNDGAAAAAAAVFNAASAAAAAQAAAIAAVGTSNQQ
HMLLPPGEVIRNSGKFPKPTKIPGKTYCKDEVVIRNADSGKVMGIKGRRV
HMIEELSETIISFQRVNPGAKERLVQITGPAEDKINYAKQLMEDTIRRNA
SPVRLEPAPAVGGSCSSLNSSNSDDAIVQPRTPTGSSLANRLSFNSAQNF
MTATAAAQQISQQMHHQTHHLQHQQQQQVAAVAAAAAAAAHAQATAAAGK
VLRPNQQLLMHSYSTNDASVGEYKFTVNVGQHLIKITGDCCELVRVAKLV
LDDYFSSSEFLASIEAGAAFDGTSLVTTPSTPLPGAGPPQFWLPGTDSGI
GLNCVVSSSANNNGEGDDEVFAEPSNGGSSTSNQNGLARSRRSHFSRKES
TPETKGAREKGDLDDLAGTNSLKSNASRVSYDIEHLLYYSMSPHSWTLPT
DWQKMQETAPSILRNKDLQDESQRFDGDKYLASIKTAAKRDIVAADEVET
LDEASFLDH
BO15934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-PE | 653 | CG2950-PE | 1..653 | 1..653 | 3319 | 100 | Plus |
| mxt-PC | 653 | CG2950-PC | 1..653 | 1..653 | 3319 | 100 | Plus |
| mxt-PA | 653 | CG2950-PA | 1..653 | 1..653 | 3319 | 100 | Plus |
| mxt-PB | 653 | CG2950-PB | 1..653 | 1..653 | 3319 | 100 | Plus |
| mxt-PG | 631 | CG2950-PG | 1..631 | 1..653 | 3174 | 96.6 | Plus |
