BO15936.complete Sequence
1924 bp assembled on 2006-10-11
GenBank Submission: FJ633635
> BO15936.complete
GAAGTTATCAGTCGACATGGCTCATCCTCTGGCCAGACGGCCCATAAACG
TTGAGCAACTGTCGGTACAACAGCTAGAAAACCGGGTGCGGGATCTAACG
CAGCGTCTGCAGCAGGCGGAAAGACAGCTCACTGAGAGCAACACAGAGCG
GGAAATATGCCACAAGCGCTTGGAGGTTGTCAGCCAGGCCCACGAGTGTC
GCATCACAGAGATGCACTGTGTCATCGCCGAGTTAAGCAAGAAATTGCGC
AGTAAGCAGGACCACGTTATCATGGAGGAGCAGGAGCCCGACGGCAGCGA
ACTCAGCTTTCAGGAGGGTTCAGTGTACAATTCCGAGCTTAACCTCACCA
ATCCTGATGCCGAATGTCAAACAGAACCACTGGAAGACTTCGAGGGCGCC
TGCAGTACCACCAGCGTGGGTAACGTTGCCCACAAACCGCCGGAACTGAG
CCATAAGGGACAAGTGGAGGCACTGCAGGAGGAAGTTCTGCACTTGAGAG
CTCGAATCGCCCTCCTCCAGTCCGAGATTTCCACCAAGGATGCTGCTGTG
GTCGAGGAACAGACCAAAGTCGCCTTCGACTGCGAATCGGAAGTCAACGA
GTGCGGACAGCGACTGAATGATTTGAATGTTTGCACTTCCTTGACAAGTC
CGCAAAAACGCATTCCAGCGGTACCGAAAATGGCTGAACGGGTTAAGTTG
CGGTGCGCCAGCAAACATGAATCCGGAGAAGATCCATCCCAAGATACTTC
ATTGAGCAACGAGCAAATTAATCTGGTCGAACATTTGGTGTCGGAGCTAA
AGGAGCAAAATCTATATATGGAGAACTTTATGGAGCCCCTACATTTGAGC
AAAGACTTGGAGCGACTGCAACGACGTGTTGAACAATTGGAGATGCGAAA
CACCATGCTGGCACTGACGCTAGACGAATGCAAGGAGCACACTGAGCATC
TGTATCTGCTATGCGGAAAGTACGAGTCCAATGCGGTTGCTCTTCAGTTG
GCGCTTAATTGCAGTGATCGCGCCATCGAGGCCTACGACGTAATGTTGGC
TCTGCTCGAAAGCAAGTTGGCACTGCTGGGGGAGAAATCAGTGGCAGCGG
AAGAGAGTCGACGATCGGTGGAGGCGGTGGCCAGGCACCTGCTAGCCCGT
TTGGATAGCGAGAAAAACGTTTGTGAGAACAGCCTGGGACCGTGGCAACA
CAACATCAACCTGGGCCCAGAGGATGCCCCAAAAACTGGCCGCCCGTGGT
GTGCCGACGACGACAACCGCCTGCGTTACCACGTCTCCAAGCTGAAGGGA
CGTCGTTCCAATGTCCAGCATACCATTGTCAGTTTGGAATCACCCTTCAG
CGACATATACGAAAGAAAGCGCCTGGCTTTGGAAAAGGAGCACGAACTTC
GGAGCGCGGACAAGAAGTCACCCATTGACTTGGAGACAGCAGTGATTATG
CAAGAAATACTCGAGCTGCGGGATTCGAATTTGCAGCTGAAGACAAAAAT
GGAAGAGGCCGAGCAGGAACGGCAGAACGCCAACGAACGAGTGGGCATAC
TCCACGAAGCCCTAAAGCAGCTACAGGCAAACAACCGGGTCTCGTATTCG
GAGGCGGAGCATGCGGCTCTCACAGAGCAGCAGTTGGTGGAGGCCTTAAC
TCGAGAAACGGAGCTCAAGGGTCGCATACAGACGCTATTGGCAAATGTAA
CAGCTTCGCAGAAGGCCTTCGACGAAAAATACGAGCAACTGCATCAGAAC
GTGCGTGAACTGCAGAAATCCAACCACAATCTGGGCCAAATGTTAGATCA
CACCAAGCGCAAGTACCAGCTGCGGGTGAGGAAGCTAGAGCAGAAGATTG
TTGACCTGCGGCTGGACTACGAGCAAGGCCATAACCATGTTCCTGAGACT
ACTCTGGCAAGCTTTCTAGACCAT
BO15936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34404-RD | 1893 | CG34404-PD | 1..1890 | 17..1906 | 9450 | 100 | Plus |
| CG34404-RC | 2148 | CG34404-PC | 289..2145 | 50..1906 | 9285 | 100 | Plus |
| CG34404-RE | 1698 | CG34404-PE | 1..1695 | 212..1906 | 8475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34404-RD | 2635 | CG34404-RD | 85..1974 | 17..1906 | 9450 | 100 | Plus |
| CG34404-RE | 2702 | CG34404-RE | 185..2041 | 50..1906 | 9285 | 100 | Plus |
| CG34404-RC | 2890 | CG34404-RC | 520..2376 | 50..1906 | 9285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15364635..15365345 | 1776..1066 | 3555 | 100 | Minus |
| 3R | 32079331 | 3R | 15365960..15366290 | 629..299 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 15365405..15365710 | 1067..762 | 1530 | 100 | Minus |
| 3R | 32079331 | 3R | 15366347..15366596 | 299..50 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 15365771..15365905 | 763..629 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 15364447..15364576 | 1906..1777 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:48:43 has no hits.
BO15936.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:33 Download gff for
BO15936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 1..1893 | 17..1907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:29 Download gff for
BO15936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1974 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:08 Download gff for
BO15936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1974 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:34 Download gff for
BO15936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1974 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:13 Download gff for
BO15936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1974 | 17..1908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:13 Download gff for
BO15936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15366347..15366596 | 50..299 | 100 | <- | Minus |
| 3R | 15366664..15366696 | 17..49 | 100 | | Minus |
| 3R | 15364445..15364576 | 1777..1908 | 98 | <- | Minus |
| 3R | 15364635..15365345 | 1066..1776 | 100 | <- | Minus |
| 3R | 15365407..15365708 | 764..1065 | 100 | <- | Minus |
| 3R | 15365771..15365904 | 630..763 | 100 | <- | Minus |
| 3R | 15365960..15366289 | 300..629 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:08 Download gff for
BO15936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11190167..11190298 | 1777..1908 | 98 | <- | Minus |
| arm_3R | 11190357..11191067 | 1066..1776 | 100 | <- | Minus |
| arm_3R | 11191129..11191430 | 764..1065 | 100 | <- | Minus |
| arm_3R | 11191493..11191626 | 630..763 | 100 | <- | Minus |
| arm_3R | 11191682..11192011 | 300..629 | 100 | <- | Minus |
| arm_3R | 11192069..11192318 | 50..299 | 100 | <- | Minus |
| arm_3R | 11192386..11192418 | 17..49 | 100 | | Minus |
BO15936.pep Sequence
Translation from 16 to 1924
> BO15936.pep
MAHPLARRPINVEQLSVQQLENRVRDLTQRLQQAERQLTESNTEREICHK
RLEVVSQAHECRITEMHCVIAELSKKLRSKQDHVIMEEQEPDGSELSFQE
GSVYNSELNLTNPDAECQTEPLEDFEGACSTTSVGNVAHKPPELSHKGQV
EALQEEVLHLRARIALLQSEISTKDAAVVEEQTKVAFDCESEVNECGQRL
NDLNVCTSLTSPQKRIPAVPKMAERVKLRCASKHESGEDPSQDTSLSNEQ
INLVEHLVSELKEQNLYMENFMEPLHLSKDLERLQRRVEQLEMRNTMLAL
TLDECKEHTEHLYLLCGKYESNAVALQLALNCSDRAIEAYDVMLALLESK
LALLGEKSVAAEESRRSVEAVARHLLARLDSEKNVCENSLGPWQHNINLG
PEDAPKTGRPWCADDDNRLRYHVSKLKGRRSNVQHTIVSLESPFSDIYER
KRLALEKEHELRSADKKSPIDLETAVIMQEILELRDSNLQLKTKMEEAEQ
ERQNANERVGILHEALKQLQANNRVSYSEAEHAALTEQQLVEALTRETEL
KGRIQTLLANVTASQKAFDEKYEQLHQNVRELQKSNHNLGQMLDHTKRKY
QLRVRKLEQKIVDLRLDYEQGHNHVPETTLASFLDH
BO15936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34404-PD | 630 | CG34404-PD | 1..630 | 1..630 | 3205 | 100 | Plus |
| CG34404-PC | 715 | CG34404-PC | 97..715 | 12..630 | 3146 | 100 | Plus |
| CG34404-PE | 565 | CG34404-PE | 1..565 | 66..630 | 2877 | 100 | Plus |
| Golgin245-PA | 1489 | CG3493-PA | 333..941 | 21..601 | 164 | 19.4 | Plus |
| Mhc-PL | 1936 | CG17927-PL | 1199..1798 | 24..620 | 161 | 19.3 | Plus |
