BO15940.complete Sequence
1915 bp assembled on 2006-10-11
GenBank Submission: FJ638745
> BO15940.complete
GAAGTTATCAGTCGACATGAAATACATCCTGGTAACTGGTGGCGTCATTA
GTGGCGTGGGAAAAGGAGTGATTGCCTCCTCGTTCGGAACGCTTTTGAAA
TCCTGTGGTCTGGATGTAACCTCGATCAAGATTGACCCCTATATCAATAT
AGATGCTGGAACCTTTTCGCCTTATGAGCATGGCGAGGTTTACGTTTTGG
ACGATGGCGCCGAGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTG
GATGTTACCCTGCATCGGGACAACAACATAACCACCGGAAAAATTTACAA
GTTGGTCATTGAGAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTC
AAGTTGTCCCACACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTG
GCCCAGACACCCGTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGA
ATTGGGAGGAACGATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCT
TCCGTCAGTTTCAGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCAT
GTGTCGCTGGTTCCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCC
CACACAAAGTTCGGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATT
TGATTGTCTGCCGATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAG
ATCAGCAACTTTTGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGA
TTTGAACTCCATTTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTA
TTGAATACCTAAATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGG
ACCAAATGCTTGCAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCGT
TCGCCGTGAAGTTTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGG
ATTCGTACGCCTCCGTAGTTAAAGCCCTGCAACATGCCGCCCTGGCAGTG
AATCGCAAACTGGAACTGGTCTTTATCGAGTCGTGCCTGCTGGAGGAGGA
AACTTTGCATTCTGAGCCGAGCAAGTACCACAAGGAGTGGCAGAAGCTAT
GCGATAGCCATGGCATCCTAGTCCCCGGTGGATTCGGTTCCCGTGGAATG
GAGGGCAAGATTCGTGCATGCCAATGGGCGCGAGAGAATCAAAAGCCATT
GCTTGGCATCTGCTTGGGTCTGCAAGCGGCGGTCATTGAATTCGCACGAA
ATAAACTTGGTCTCAAGGATGCAAACACCACAGAAATCGATCCGAACACA
GCTAATGCCTTGGTCATCGATATGCCAGAGCATCACACGGGTCAATTGGG
CGGCACTATGCGCTTGGGCAAGCGAATAACTGTTTTCTCTGATGGTCCTA
GTGTCATTCGCCAGTTGTATGGCAATCCGAAAAGCGTGCAGGAGCGTCAT
CGGCATCGTTACGAGGTTAATCCCAAATACGTGCATCTGCTGGAAGAGCA
AGGCATGCGATTTGTGGGCACCGACGTCGACAAAACTAGGATGGAAATCA
TTGAGCTCAGCGGTCATCCCTACTTTGTTGCCACCCAATATCATCCAGAG
TACTTGTCGCGGCCTCTGAAGCCGTCGCCTCCTTTCCTCGGCCTGATCCT
GGCCTCAGTGGATCGATTGAACCAATATATTCAGCGCGGTTGCCGCCTGT
CGCCCCGCCAGCTATCCGACGCATCCTCGGATGAGGAGGACAGTGTTGTG
GGCTTGGCCGGAGCAACAAAATCGCTGAGCTCCTTGAAAATTCCCATTAC
ACCCACAAATGGAATATCAAAAAGTTGCAATGGTAGCATAAGCACTTCCG
ACAGCGAAGGTGCCTGCGGAGGCGTTGATCCTACCAATGGCCATAAGGCA
AGCTTTCTAGACCAT
BO15940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTPsyn-RC | 1884 | CG45070-PC | 1..1881 | 17..1897 | 9405 | 100 | Plus |
| CTPsyn-RA | 1884 | CG45070-PA | 1..1881 | 17..1897 | 9405 | 100 | Plus |
| CTPsyn-RB | 1872 | CG45070-PB | 155..1869 | 183..1897 | 8575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTPsyn-RC | 2627 | CG45070-RC | 438..2318 | 17..1897 | 9405 | 100 | Plus |
| CTPsyn-RA | 2406 | CG45070-RA | 217..2097 | 17..1897 | 9405 | 100 | Plus |
| CTPsyn-RB | 2423 | CG45070-RB | 400..2114 | 183..1897 | 8575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15111653..15112694 | 856..1897 | 5210 | 100 | Plus |
| 3L | 28110227 | 3L | 15111085..15111588 | 352..855 | 2520 | 100 | Plus |
| 3L | 28110227 | 3L | 15110815..15110986 | 182..353 | 860 | 100 | Plus |
| 3L | 28110227 | 3L | 15098351..15098525 | 17..191 | 845 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:24:34 has no hits.
BO15940.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:54 Download gff for
BO15940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6854-RC | 1..1884 | 17..1901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:16 Download gff for
BO15940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6854-RC | 215..2095 | 17..1899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:24 Download gff for
BO15940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTPsyn-RC | 217..2097 | 17..1899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:54 Download gff for
BO15940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6854-RC | 212..2101 | 10..1904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:29 Download gff for
BO15940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTPsyn-RA | 217..2097 | 17..1899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:29 Download gff for
BO15940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15110816..15110986 | 183..353 | 100 | -> | Plus |
| 3L | 15111087..15111588 | 354..855 | 100 | -> | Plus |
| 3L | 15098351..15098516 | 17..182 | 100 | -> | Plus |
| 3L | 15111653..15112694 | 856..1899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:24 Download gff for
BO15940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15091451..15091616 | 17..182 | 100 | -> | Plus |
| arm_3L | 15103916..15104086 | 183..353 | 100 | -> | Plus |
| arm_3L | 15104187..15104688 | 354..855 | 100 | -> | Plus |
| arm_3L | 15104753..15105794 | 856..1899 | 99 | | Plus |
BO15940.pep Sequence
Translation from 16 to 1915
> BO15940.pep
MKYILVTGGVISGVGKGVIASSFGTLLKSCGLDVTSIKIDPYINIDAGTF
SPYEHGEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEK
ERTGEYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTI
GDIEGMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSV
RELRGCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIY
HVPLLMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVC
IAVVGKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSE
PSKYHKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICL
GLQAAVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRL
GKRITVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFV
GTDVDKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDR
LNQYIQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGI
SKSCNGSISTSDSEGACGGVDPTNGHKASFLDH
BO15940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTPsyn-PC | 627 | CG45070-PC | 1..627 | 1..627 | 3279 | 100 | Plus |
| CTPsyn-PA | 627 | CG45070-PA | 1..627 | 1..627 | 3279 | 100 | Plus |
| CTPsyn-PB | 623 | CG45070-PB | 53..623 | 57..627 | 2991 | 100 | Plus |
