BO15942.complete Sequence
2476 bp assembled on 2007-03-23
GenBank Submission: FJ633636
> BO15942.complete
GAAGTTATCAGTCGACATGTATCGCCGCCGGTATTCCGCCTTCGAGCCCA
GCACACCCCGCGTGGGAGTGCTACCCTCTCCACCGCCTCAATATGCCAAC
CCTCCCGCCGACACTGCCGCCCCGAAAACGCCACCCAAGCTGAGCGTACA
CTTTGACCCCAATTTGCCGAAAGACAACGATAGCAACAACAACCTCACCG
GCAGCGAAAATGCAAATGCTAAAGGCGGCGGTCGCAAGGCGCGTTCACTA
AGCAATTCGCCACTGTATCACCGAAAAAAGCGGTACGGCCATCTGCCGGC
GCTGATGTCGAATAACGGGCCGACGGCCAGCAGCAACTACCAGCTGCTGA
ACAGTGCGAATCTGCGAGATCTCATCGACGGCCAACGCCACTCGCATCAC
GTAAGCAGGCGCGATGACAGCCAAAGCCACAGTCATAGCGAAAGCCCAAG
TCACATTGGCCACATTAGCCAAAGCAACCAAAGCATACCAAGCCTCCCAA
GCCTGCCAAGCGGCAAAAACAAGACGAAAGATGGCAAAAAGCTGAAGGCA
ACTTTAACGGCGGCCATGTCATCGTCGCTGCTGCGACGCAAGGCGCACAG
CAATCACAGTCAACAGCAGAAACTGCAACTGCAACAGCAACAGCAAGAGC
AACATCAGCAACAGCTGCAGCAGCAACAATTGAGAAGCAACAACAGCAAG
GCAATTGCAAATGCTGCCCGCCATTCGCTGGGTCATTCACCCTCCGCTGC
CGCCGCCGCTGCTGCAGTGCAGCAGACGCTTGTCTACGAGCGGCGACGCG
TCAGCAGCGCCCACTCCTCCCCCTCGCCCACCTCCAGGCACCACTCCCCA
GTGCACCAGTGCATGCTGATGCGGCGGCGCAGCGACTACAGCGTCGAGCA
GATCGAGCAGTGGAAACGCCAGCAGCAATTGTTGCCGCGATCCGGACGCA
AGATTAGCTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAAATCTATCA
GATCTGGAAGAGGACGACTCACAGATCTTCGTGAAGTTCTTTCGTTTTCA
CAAGTGCTATGATCTGATACCCACCTCCGCCAAGTTGGTTGTCTTCGACA
CCCAGCTTCTTGTAAAGAAGGCCTTCTACGCCCTCGTCTACAACGGTGTG
CGAGCGGCACCGCTCTGGGATTCGGAGAAGCAACAGTTCGTGGGCATGCT
AACCATCACGGACTTTATCAAGATCCTGCAAATGTATTACAAATCGCCAA
ATGCGTCCATGGAGCAGCTGGAAGAGCACAAACTGGACACGTGGCGGAGC
GTGCTGCACAACCAGGTGATGCCGTTGGTCAGCATCGGACCGGATGCGTC
CCTCTACGATGCCATCAAAATTCTCATCCACAGCCGCATACATCGCCTGC
CCGTCATCGATCCGGCGACCGGCAATGTCCTCTACATCCTGACACATAAA
CGCATACTTAGGTTCCTTTTCCTATACATTAATGAATTACCAAAGCCCGC
GTACATGCAAAAAAGTTTGCGCGAACTGAAGATTGGCACCTATAACAACA
TCGAGACCGCCGACGAGACGACGAGCATCATCACGGCGCTCAAGAAATTT
GTGGAGCGACGAGTCTCAGCCCTGCCACTAGTGGATTCCGATGGTCGCCT
CGTTGACATTTACGCAAAGTTTGATGTGATTAATCTCGCCGCCGAGAAAA
CCTACAACGATCTCGATGTTTCGCTGCGCAAAGCCAACGAGCACCGGAAC
GAGTGGTTCGAGGGCGTGCAGAAGTGCAATCTGGACGAATCGCTCTACAC
GATCATGGAACGAATCGTCCGCGCCGAAGTACATCGACTGGTGGTGGTCG
ACGAGAATCGCAAAGTGATCGGCATTATCTCGCTGTCCGATATACTGCTC
TACCTCGTCCTGCGACCAAGCGGTGAAGGCGTCGGTGGCTCGGAGAGCTC
ATTGCGTGCGTCCGATCCCGTTCTGCTGCGCAAAGTGGCTGAGGTTGAAA
TACCAGCGACAGCCGCAGCGGCGACGACAACAACCCCGCCTCGCAGTCCA
TCGGCCGGATCCGGCAATCGCAGCCTGATCGAGGACATACCCGAAGAGGA
GACGGCGCCGGCGAGGAGCGACGATGCCGACAGTGATAACAATAAGTCCG
CCAGTGAGGATAAAGCCAACAATAACCAGCACGACCAGACGACGACGGCT
GCGACAGCTAATGGTGATAGCAACAACAGCCCCGTAGAAGTGTCCTTTGC
CGATGAGGCGCAGGAAGAAGAAGCTGCCGACCAGGTCGAGCGCAGCAATT
GTGATGATGATGACCAGCCAGCGTTAGCGGAGATTGAGCGCAAGAATGCA
TCGATGGACGACGACGAGGACGATGGGATGAGCAGCGCCGTGTCCGCTGC
CTCCGCTTTGGGCCAGTCACTGACGCCCGCGGCGCAAGAAATGGCGTTGG
TTAGTGAAGCAAGCTTTCTAGACCAT
BO15942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RG | 2445 | CG17299-PG | 1..2442 | 17..2458 | 12210 | 100 | Plus |
| SNF4Agamma-RE | 2721 | CG17299-PE | 1219..2718 | 959..2458 | 7500 | 100 | Plus |
| SNF4Agamma-RC | 2721 | CG17299-PC | 1219..2718 | 959..2458 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RG | 2786 | CG17299-RG | 181..2623 | 16..2458 | 12215 | 100 | Plus |
| SNF4Agamma-RE | 3308 | CG17299-RE | 1646..3145 | 959..2458 | 7500 | 100 | Plus |
| SNF4Agamma-RC | 3197 | CG17299-RC | 1535..3034 | 959..2458 | 7500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21205108..21206050 | 16..958 | 4715 | 100 | Plus |
| 3R | 32079331 | 3R | 21211748..21212524 | 1682..2458 | 3885 | 100 | Plus |
| 3R | 32079331 | 3R | 21210788..21211080 | 1007..1299 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 21211387..21211590 | 1478..1681 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 21211141..21211319 | 1299..1477 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 21207619..21207667 | 959..1007 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:51:03 has no hits.
BO15942.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:55 Download gff for
BO15942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 1..2445 | 17..2462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:25 Download gff for
BO15942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 174..2628 | 11..2465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:46 Download gff for
BO15942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 182..2623 | 17..2460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:55 Download gff for
BO15942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 174..2628 | 11..2465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:32 Download gff for
BO15942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 182..2623 | 17..2460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:32 Download gff for
BO15942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21205109..21206050 | 17..958 | 100 | -> | Plus |
| 3R | 21207619..21207667 | 959..1007 | 100 | -> | Plus |
| 3R | 21210789..21211079 | 1008..1298 | 100 | -> | Plus |
| 3R | 21211141..21211319 | 1299..1477 | 100 | -> | Plus |
| 3R | 21211387..21211590 | 1478..1681 | 100 | -> | Plus |
| 3R | 21211748..21212524 | 1682..2460 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:46 Download gff for
BO15942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17030831..17031772 | 17..958 | 100 | -> | Plus |
| arm_3R | 17033341..17033389 | 959..1007 | 100 | -> | Plus |
| arm_3R | 17036511..17036801 | 1008..1298 | 100 | -> | Plus |
| arm_3R | 17036863..17037041 | 1299..1477 | 100 | -> | Plus |
| arm_3R | 17037109..17037312 | 1478..1681 | 100 | -> | Plus |
| arm_3R | 17037470..17038246 | 1682..2460 | 99 | | Plus |
BO15942.pep Sequence
Translation from 16 to 2476
> BO15942.pep
MYRRRYSAFEPSTPRVGVLPSPPPQYANPPADTAAPKTPPKLSVHFDPNL
PKDNDSNNNLTGSENANAKGGGRKARSLSNSPLYHRKKRYGHLPALMSNN
GPTASSNYQLLNSANLRDLIDGQRHSHHVSRRDDSQSHSHSESPSHIGHI
SQSNQSIPSLPSLPSGKNKTKDGKKLKATLTAAMSSSLLRRKAHSNHSQQ
QKLQLQQQQQEQHQQQLQQQQLRSNNSKAIANAARHSLGHSPSAAAAAAA
VQQTLVYERRRVSSAHSSPSPTSRHHSPVHQCMLMRRRSDYSVEQIEQWK
RQQQLLPRSGRKISLPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDL
IPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDF
IKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAI
KILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKS
LRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYA
KFDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERI
VRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSGEGVGGSESSLRASD
PVLLRKVAEVEIPATAAAATTTTPPRSPSAGSGNRSLIEDIPEEETAPAR
SDDADSDNNKSASEDKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQE
EEAADQVERSNCDDDDQPALAEIERKNASMDDDEDDGMSSAVSAASALGQ
SLTPAAQEMALVSEASFLDH
BO15942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-PG | 814 | CG17299-PG | 1..814 | 1..814 | 4152 | 100 | Plus |
| SNF4Agamma-PE | 906 | CG17299-PE | 407..906 | 315..814 | 2522 | 100 | Plus |
| SNF4Agamma-PC | 906 | CG17299-PC | 407..906 | 315..814 | 2522 | 100 | Plus |
| SNF4Agamma-PF | 1400 | CG17299-PF | 901..1400 | 315..814 | 2522 | 100 | Plus |
| SNF4Agamma-PS | 1400 | CG17299-PS | 901..1400 | 315..814 | 2522 | 100 | Plus |
