Clone Sequence Records
BO15948.3prime Sequence
296 bp (296 high quality bases) assembled on 2006-06-02
> BO15948.3prime
ATGGTCTAGAAAGCTTGCCAGGTCGCCGCCACCTCGCTTTTGGAGCATCT
GAGCGAACCGCTGGGTGATAAGCAGCGACGTGTCGATGAATCGGTCGACG
CAGTTGCTCAGGCACGTCTCGGTGGCGTGGTCCAGCTTGGTACTCGGCTT
GCCGATGCACTTCTCCCAGCAGATCTCGTTGAACTCGTGTATCTGCGCGT
TGACCTGTGCCTTCTGTTTCTCAATCAAGAGGAACTCCTGCAGCTCCTTG
TCATTGCCGGAAAGGTTCTCAAAATCGGACATGTCGACTGATAACT
BO15948.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1728-PA | 267 | Tim8-RA | 1..264 | 282..19 | 1320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-RB | 761 | CG1728-RB | 92..355 | 282..19 | 1320 | 100 | Minus |
Tim8-RA | 661 | CG1728-RA | 92..355 | 282..19 | 1320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11368701..11368877 | 195..19 | 885 | 100 | Minus |
X | 23542271 | X | 11368536..11368625 | 282..193 | 450 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 18:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 3256..3287 | 178..147 | 106 | 81.2 | Minus |
BO15948.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:39 Download gff for
BO15948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-PA | 1..267 | 18..282 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:24 Download gff for
BO15948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1728-PA | 1..267 | 18..282 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:59:49 Download gff for
BO15948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 84..362 | 10..292 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:12:54 Download gff for
BO15948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 84..362 | 10..292 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:12:54 Download gff for
BO15948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11368528..11368625 | 193..292 | 96 | -> | Minus |
X | 11368704..11368884 | 10..192 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:59:49 Download gff for
BO15948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11262561..11262658 | 193..292 | 96 | -> | Minus |
arm_X | 11262737..11262917 | 10..192 | 97 | | Minus |
BO15948.5prime Sequence
296 bp (296 high quality bases) assembled on 2006-06-02
> BO15948.5prime
GAAGTTATCAGTCGACATGTCCGATTTTGAGAACCTTTCCGGCAATGACA
AGGAGCTGCAGGAGTTCCTCTTGATTGAGAAACAGAAGGCACAGGTCAAC
GCGCAGATACACGAGTTCAACGAGATCTGCTGGGAGAAGTGCATCGGCAA
GCCGAGTACCAAGCTGGACCACGCCACCGAGACGTGCCTGAGCAACTGCG
TCGACCGATTCATCGACACGTCGCTGCTTATCACCCAGCGGTTCGCTCAG
ATGCTCCAAAAGCGAGGTGGCGGCGACCTGGCAAGCTTTCTAGACC
BO15948.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1728-PA | 267 | Tim8-RA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-RB | 761 | CG1728-RB | 92..355 | 17..280 | 1320 | 100 | Plus |
Tim8-RA | 661 | CG1728-RA | 92..355 | 17..280 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11368701..11368877 | 104..280 | 885 | 100 | Plus |
X | 23542271 | X | 11368536..11368625 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 3256..3287 | 121..152 | 106 | 81.2 | Plus |
BO15948.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:40 Download gff for
BO15948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-PA | 1..267 | 17..281 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:25 Download gff for
BO15948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1728-PA | 1..267 | 17..281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:12 Download gff for
BO15948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 84..362 | 7..289 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:13 Download gff for
BO15948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 84..362 | 7..289 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:13 Download gff for
BO15948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11368528..11368625 | 7..106 | 96 | -> | Plus |
X | 11368704..11368884 | 107..289 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:12 Download gff for
BO15948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11262561..11262658 | 7..106 | 96 | -> | Plus |
arm_X | 11262737..11262917 | 107..289 | 97 | | Plus |
BO15948.complete Sequence
298 bp (298 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633637
> BO15948.complete
GAAGTTATCAGTCGACATGTCCGATTTTGAGAACCTTTCCGGCAATGACA
AGGAGCTGCAGGAGTTCCTCTTGATTGAGAAACAGAAGGCACAGGTCAAC
GCGCAGATACACGAGTTCAACGAGATCTGCTGGGAGAAGTGCATCGGCAA
GCCGAGTACCAAGCTGGACCACGCCACCGAGACGTGCCTGAGCAACTGCG
TCGACCGATTCATCGACACGTCGCTGCTTATCACCCAGCGGTTCGCTCAG
ATGCTCCAAAAGCGAGGTGGCGGCGACCTGGCAAGCTTTCTAGACCAT
BO15948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-RB | 267 | CG1728-PB | 1..264 | 17..280 | 1320 | 100 | Plus |
Tim8-RA | 267 | CG1728-PA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-RB | 761 | CG1728-RB | 92..355 | 17..280 | 1320 | 100 | Plus |
Tim8-RA | 661 | CG1728-RA | 92..355 | 17..280 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11368701..11368877 | 104..280 | 885 | 100 | Plus |
X | 23542271 | X | 11368536..11368625 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 3256..3287 | 121..152 | 106 | 81.2 | Plus |
BO15948.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:54 Download gff for
BO15948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 1..267 | 17..281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:07 Download gff for
BO15948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 68..346 | 7..289 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:56 Download gff for
BO15948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 92..355 | 17..282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:54 Download gff for
BO15948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 68..346 | 7..289 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:08 Download gff for
BO15948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 92..355 | 17..282 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:08 Download gff for
BO15948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11368704..11368877 | 107..282 | 98 | | Plus |
X | 11368536..11368625 | 17..106 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:56 Download gff for
BO15948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11262569..11262658 | 17..106 | 100 | -> | Plus |
arm_X | 11262737..11262910 | 107..282 | 98 | | Plus |
BO15948.pep Sequence
Translation from 16 to 298
> BO15948.pep
MSDFENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCIGKPSTKL
DHATETCLSNCVDRFIDTSLLITQRFAQMLQKRGGGDLASFLDH
BO15948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-PB | 88 | CG1728-PB | 1..88 | 1..88 | 464 | 100 | Plus |
Tim8-PA | 88 | CG1728-PA | 1..88 | 1..88 | 464 | 100 | Plus |
CG34132-PA | 84 | CG34132-PA | 15..79 | 20..82 | 135 | 38.5 | Plus |