Clone Sequence Records
BO15951.3prime Sequence
629 bp (629 high quality bases) assembled on 2006-06-02
> BO15951.3prime
ATGGTCTAGAAAGCTTGCGTTGTATGTTCTCCTATATGCGCCGAAAAAAT
CGAAGGGCCCTGGTTCCCAATCCAAGTGGAGTACTGGTTCCTTAACAGCC
ATTATCATGGGATCTACTTTCTCCGCATAGTCGGCTAGCTGGGGCTCGCT
TATGGCCTTGCATGATTCCGATTCTTTCGATGTGTGCTTTAAGGCATCCG
GCTTTCTATTGTGCGGCACCAGCACAGAATCGTTGACATTGAGAGGCACC
AGGACCCCGAATACAACACGATTCGGAGCGAAGTTCATCTTTTTGGTGAT
CTGTGGGGCGATAAAGTTAGAATCCTTATTAAGGTTCATATCCAGCTTAA
TGTTGGATATGATATGGGCCTCGTTCTGCTTGCGCACGGTGGTGTTGCAT
TTGGGCACGGCTAACTTGATCTCCGGGTTTTTCCCGTTGGTCATTGCACC
TTCTTTGGCTTTCGGACTGTCCGGCGAACTGTTATCCGCATGAGAACCGT
TGCAGGATTCGACGAGCACATTCGGCGGTGCAGACGACAGTTTGGCCACA
GAAACGCGTCGCGCTGTGAAATTCCTTTGGTTCGCATGTACTCGGTTCCT
ACGTTTGTGAGGCATGTCGACTGATAACT
BO15951.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17295-PA | 600 | CG17295-RA | 1..596 | 615..20 | 2905 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-RB | 681 | CG17295-RB | 44..639 | 615..20 | 2935 | 99.5 | Minus |
Rcd4-RA | 733 | CG17295-RA | 96..691 | 615..20 | 2935 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8382956..8383270 | 615..301 | 1575 | 100 | Minus |
2L | 23513712 | 2L | 8383327..8383615 | 308..20 | 1385 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:05:02 has no hits.
BO15951.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:45 Download gff for
BO15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-PA | 1..600 | 18..615 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:32 Download gff for
BO15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-PA | 1..600 | 18..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:03 Download gff for
BO15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..691 | 20..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:43 Download gff for
BO15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..691 | 20..615 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:43 Download gff for
BO15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8382956..8383270 | 301..615 | 100 | -> | Minus |
2L | 8383335..8383615 | 20..300 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:03 Download gff for
BO15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8382956..8383270 | 301..615 | 100 | -> | Minus |
arm_2L | 8383335..8383615 | 20..300 | 98 | | Minus |
BO15951.5prime Sequence
629 bp (629 high quality bases) assembled on 2006-06-02
> BO15951.5prime
GAAGTTATCAGTCGACATGCCTCACAAACGTAGGAACCGAGTACATGCGA
ACCAAAGGAATTTCACAGCGCGACGCGTTTCTGTGGCCAAACTGTCGTCT
GCACCGCCGAATGTGCTCGTCGAATCCTGCAACGGTTCTCATGCGGATAA
CAGTTCGCCGGACAGTCCGAAAGCCAAAGAAGGTGCAATGACCAACGGGA
AAAACCCGGAGATCAAGTTAGCCGTGCCCAAATGCAACACCACCGTGCGC
AAGCAGAACGAGGCCCATATCATATCCAACATTAAGCTGGATATGAACCT
TAATAAGGATTCTAACTTTATCGCCCCACAGATCACCAAAAAGATGAACT
TCGCTCCGAATCGTGTTGTATTCGGGGTCCTGGTGCCTCTCAATGTCAAC
GATTCTGTGCTGGTGCCGCACAATAGAAAGCCGGATGCCTTAAAGCACAC
ATCGAAAGAATCGGAATCATGCAAGGCCATAAGCGAGCCCCAGCTAGCCG
ACTATGCGGAGAAAGTAGATCCCATGATAATGGCTGTTAAGGAACCAGTA
CTCCACTTGGATTGGGAACCAGGGCCCTTCGATTTTTTCGGCGCATATAG
GAGAACATACAACGCAAGCTTTCTAGACC
BO15951.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17295-PA | 600 | CG17295-RA | 1..596 | 17..612 | 2905 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-RB | 681 | CG17295-RB | 44..639 | 17..612 | 2935 | 99.5 | Plus |
Rcd4-RA | 733 | CG17295-RA | 96..691 | 17..612 | 2935 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8382956..8383270 | 17..331 | 1575 | 100 | Plus |
2L | 23513712 | 2L | 8383327..8383615 | 324..612 | 1385 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:08:12 has no hits.
BO15951.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:46 Download gff for
BO15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-PA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:33 Download gff for
BO15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-PA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:57:18 Download gff for
BO15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..691 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:19 Download gff for
BO15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..691 | 17..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:19 Download gff for
BO15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8382956..8383270 | 17..331 | 100 | -> | Plus |
2L | 8383335..8383615 | 332..612 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:57:18 Download gff for
BO15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8382956..8383270 | 17..331 | 100 | -> | Plus |
arm_2L | 8383335..8383615 | 332..612 | 98 | | Plus |
BO15951.complete Sequence
631 bp (631 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633638
> BO15951.complete
GAAGTTATCAGTCGACATGCCTCACAAACGTAGGAACCGAGTACATGCGA
ACCAAAGGAATTTCACAGCGCGACGCGTTTCTGTGGCCAAACTGTCGTCT
GCACCGCCGAATGTGCTCGTCGAATCCTGCAACGGTTCTCATGCGGATAA
CAGTTCGCCGGACAGTCCGAAAGCCAAAGAAGGTGCAATGACCAACGGGA
AAAACCCGGAGATCAAGTTAGCCGTGCCCAAATGCAACACCACCGTGCGC
AAGCAGAACGAGGCCCATATCATATCCAACATTAAGCTGGATATGAACCT
TAATAAGGATTCTAACTTTATCGCCCCACAGATCACCAAAAAGATGAACT
TCGCTCCGAATCGTGTTGTATTCGGGGTCCTGGTGCCTCTCAATGTCAAC
GATTCTGTGCTGGTGCCGCACAATAGAAAGCCGGATGCCTTAAAGCACAC
ATCGAAAGAATCGGAATCATGCAAGGCCATAAGCGAGCCCCAGCTAGCCG
ACTATGCGGAGAAAGTAGATCCCATGATAATGGCTGTTAAGGAACCAGTA
CTCCACTTGGATTGGGAACCAGGGCCCTTCGATTTTTTCGGCGCATATAG
GAGAACATACAACGCAAGCTTTCTAGACCAT
BO15951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-RB | 600 | CG17295-PB | 1..596 | 17..612 | 2935 | 99.5 | Plus |
Rcd4-RA | 600 | CG17295-PA | 1..596 | 17..612 | 2935 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-RB | 681 | CG17295-RB | 44..639 | 17..612 | 2935 | 99.5 | Plus |
Rcd4-RA | 733 | CG17295-RA | 96..691 | 17..612 | 2935 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8382956..8383270 | 17..331 | 1575 | 100 | Plus |
2L | 23513712 | 2L | 8383327..8383615 | 324..612 | 1385 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:46:36 has no hits.
BO15951.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:38 Download gff for
BO15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-RA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:10 Download gff for
BO15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-RA | 142..737 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:28 Download gff for
BO15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..691 | 17..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:38 Download gff for
BO15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-RA | 142..737 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:13 Download gff for
BO15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..691 | 17..615 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:13 Download gff for
BO15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8382956..8383270 | 17..331 | 100 | -> | Plus |
2L | 8383335..8383615 | 332..615 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:28 Download gff for
BO15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8382956..8383270 | 17..331 | 100 | -> | Plus |
arm_2L | 8383335..8383615 | 332..615 | 97 | | Plus |
BO15951.pep Sequence
Translation from 16 to 631
> BO15951.pep
MPHKRRNRVHANQRNFTARRVSVAKLSSAPPNVLVESCNGSHADNSSPDS
PKAKEGAMTNGKNPEIKLAVPKCNTTVRKQNEAHIISNIKLDMNLNKDSN
FIAPQITKKMNFAPNRVVFGVLVPLNVNDSVLVPHNRKPDALKHTSKESE
SCKAISEPQLADYAEKVDPMIMAVKEPVLHLDWEPGPFDFFGAYRRTYNA
SFLDH
BO15951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-PB | 199 | CG17295-PB | 1..199 | 1..199 | 1048 | 100 | Plus |
Rcd4-PA | 199 | CG17295-PA | 1..199 | 1..199 | 1048 | 100 | Plus |