Clone BO15951 Report

Search the DGRC for BO15951

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptRcd4-RA
Protein status:BO15951.pep: validated full length
Sequenced Size:631

Clone Sequence Records

BO15951.3prime Sequence

629 bp (629 high quality bases) assembled on 2006-06-02

> BO15951.3prime
ATGGTCTAGAAAGCTTGCGTTGTATGTTCTCCTATATGCGCCGAAAAAAT
CGAAGGGCCCTGGTTCCCAATCCAAGTGGAGTACTGGTTCCTTAACAGCC
ATTATCATGGGATCTACTTTCTCCGCATAGTCGGCTAGCTGGGGCTCGCT
TATGGCCTTGCATGATTCCGATTCTTTCGATGTGTGCTTTAAGGCATCCG
GCTTTCTATTGTGCGGCACCAGCACAGAATCGTTGACATTGAGAGGCACC
AGGACCCCGAATACAACACGATTCGGAGCGAAGTTCATCTTTTTGGTGAT
CTGTGGGGCGATAAAGTTAGAATCCTTATTAAGGTTCATATCCAGCTTAA
TGTTGGATATGATATGGGCCTCGTTCTGCTTGCGCACGGTGGTGTTGCAT
TTGGGCACGGCTAACTTGATCTCCGGGTTTTTCCCGTTGGTCATTGCACC
TTCTTTGGCTTTCGGACTGTCCGGCGAACTGTTATCCGCATGAGAACCGT
TGCAGGATTCGACGAGCACATTCGGCGGTGCAGACGACAGTTTGGCCACA
GAAACGCGTCGCGCTGTGAAATTCCTTTGGTTCGCATGTACTCGGTTCCT
ACGTTTGTGAGGCATGTCGACTGATAACT

BO15951.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17295-PA 600 CG17295-RA 1..596 615..20 2905 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-RB 681 CG17295-RB 44..639 615..20 2935 99.5 Minus
Rcd4-RA 733 CG17295-RA 96..691 615..20 2935 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8382956..8383270 615..301 1575 100 Minus
2L 23513712 2L 8383327..8383615 308..20 1385 98.6 Minus
Blast to na_te.dros performed on 2015-02-11 18:05:02 has no hits.

BO15951.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:45 Download gff for BO15951.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17295-PA 1..600 18..615 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:32 Download gff for BO15951.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17295-PA 1..600 18..615 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:03 Download gff for BO15951.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..691 20..615 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:43 Download gff for BO15951.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..691 20..615 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:43 Download gff for BO15951.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8382956..8383270 301..615 100 -> Minus
2L 8383335..8383615 20..300 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:03 Download gff for BO15951.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8382956..8383270 301..615 100 -> Minus
arm_2L 8383335..8383615 20..300 98   Minus

BO15951.5prime Sequence

629 bp (629 high quality bases) assembled on 2006-06-02

> BO15951.5prime
GAAGTTATCAGTCGACATGCCTCACAAACGTAGGAACCGAGTACATGCGA
ACCAAAGGAATTTCACAGCGCGACGCGTTTCTGTGGCCAAACTGTCGTCT
GCACCGCCGAATGTGCTCGTCGAATCCTGCAACGGTTCTCATGCGGATAA
CAGTTCGCCGGACAGTCCGAAAGCCAAAGAAGGTGCAATGACCAACGGGA
AAAACCCGGAGATCAAGTTAGCCGTGCCCAAATGCAACACCACCGTGCGC
AAGCAGAACGAGGCCCATATCATATCCAACATTAAGCTGGATATGAACCT
TAATAAGGATTCTAACTTTATCGCCCCACAGATCACCAAAAAGATGAACT
TCGCTCCGAATCGTGTTGTATTCGGGGTCCTGGTGCCTCTCAATGTCAAC
GATTCTGTGCTGGTGCCGCACAATAGAAAGCCGGATGCCTTAAAGCACAC
ATCGAAAGAATCGGAATCATGCAAGGCCATAAGCGAGCCCCAGCTAGCCG
ACTATGCGGAGAAAGTAGATCCCATGATAATGGCTGTTAAGGAACCAGTA
CTCCACTTGGATTGGGAACCAGGGCCCTTCGATTTTTTCGGCGCATATAG
GAGAACATACAACGCAAGCTTTCTAGACC

BO15951.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17295-PA 600 CG17295-RA 1..596 17..612 2905 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-RB 681 CG17295-RB 44..639 17..612 2935 99.5 Plus
Rcd4-RA 733 CG17295-RA 96..691 17..612 2935 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8382956..8383270 17..331 1575 100 Plus
2L 23513712 2L 8383327..8383615 324..612 1385 98.6 Plus
Blast to na_te.dros performed on 2015-02-11 19:08:12 has no hits.

BO15951.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:46 Download gff for BO15951.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17295-PA 1..600 17..614 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:33 Download gff for BO15951.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17295-PA 1..600 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:57:18 Download gff for BO15951.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..691 17..612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:19 Download gff for BO15951.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..691 17..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:19 Download gff for BO15951.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8382956..8383270 17..331 100 -> Plus
2L 8383335..8383615 332..612 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:57:18 Download gff for BO15951.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8382956..8383270 17..331 100 -> Plus
arm_2L 8383335..8383615 332..612 98   Plus

BO15951.complete Sequence

631 bp (631 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633638

> BO15951.complete
GAAGTTATCAGTCGACATGCCTCACAAACGTAGGAACCGAGTACATGCGA
ACCAAAGGAATTTCACAGCGCGACGCGTTTCTGTGGCCAAACTGTCGTCT
GCACCGCCGAATGTGCTCGTCGAATCCTGCAACGGTTCTCATGCGGATAA
CAGTTCGCCGGACAGTCCGAAAGCCAAAGAAGGTGCAATGACCAACGGGA
AAAACCCGGAGATCAAGTTAGCCGTGCCCAAATGCAACACCACCGTGCGC
AAGCAGAACGAGGCCCATATCATATCCAACATTAAGCTGGATATGAACCT
TAATAAGGATTCTAACTTTATCGCCCCACAGATCACCAAAAAGATGAACT
TCGCTCCGAATCGTGTTGTATTCGGGGTCCTGGTGCCTCTCAATGTCAAC
GATTCTGTGCTGGTGCCGCACAATAGAAAGCCGGATGCCTTAAAGCACAC
ATCGAAAGAATCGGAATCATGCAAGGCCATAAGCGAGCCCCAGCTAGCCG
ACTATGCGGAGAAAGTAGATCCCATGATAATGGCTGTTAAGGAACCAGTA
CTCCACTTGGATTGGGAACCAGGGCCCTTCGATTTTTTCGGCGCATATAG
GAGAACATACAACGCAAGCTTTCTAGACCAT

BO15951.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-RB 600 CG17295-PB 1..596 17..612 2935 99.5 Plus
Rcd4-RA 600 CG17295-PA 1..596 17..612 2935 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-RB 681 CG17295-RB 44..639 17..612 2935 99.5 Plus
Rcd4-RA 733 CG17295-RA 96..691 17..612 2935 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8382956..8383270 17..331 1575 100 Plus
2L 23513712 2L 8383327..8383615 324..612 1385 98.6 Plus
Blast to na_te.dros performed on 2014-11-27 13:46:36 has no hits.

BO15951.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:38 Download gff for BO15951.complete
Subject Subject Range Query Range Percent Splice Strand
CG17295-RA 1..600 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:10 Download gff for BO15951.complete
Subject Subject Range Query Range Percent Splice Strand
CG17295-RA 142..737 17..612 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:28 Download gff for BO15951.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..691 17..615 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:38 Download gff for BO15951.complete
Subject Subject Range Query Range Percent Splice Strand
CG17295-RA 142..737 17..612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:13 Download gff for BO15951.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..691 17..615 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:13 Download gff for BO15951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8382956..8383270 17..331 100 -> Plus
2L 8383335..8383615 332..615 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:28 Download gff for BO15951.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8382956..8383270 17..331 100 -> Plus
arm_2L 8383335..8383615 332..615 97   Plus

BO15951.pep Sequence

Translation from 16 to 631

> BO15951.pep
MPHKRRNRVHANQRNFTARRVSVAKLSSAPPNVLVESCNGSHADNSSPDS
PKAKEGAMTNGKNPEIKLAVPKCNTTVRKQNEAHIISNIKLDMNLNKDSN
FIAPQITKKMNFAPNRVVFGVLVPLNVNDSVLVPHNRKPDALKHTSKESE
SCKAISEPQLADYAEKVDPMIMAVKEPVLHLDWEPGPFDFFGAYRRTYNA
SFLDH

BO15951.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-PB 199 CG17295-PB 1..199 1..199 1048 100 Plus
Rcd4-PA 199 CG17295-PA 1..199 1..199 1048 100 Plus