Clone BO15953 Report

Search the DGRC for BO15953

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG4210-RB
Protein status:BO15953.pep: full length peptide match
Sequenced Size:460

Clone Sequence Records

BO15953.3prime Sequence

458 bp (458 high quality bases) assembled on 2006-06-02

> BO15953.3prime
ATGGTCTAGAAAGCTTGCAGATTTTTTTGCCCTCAGATCCGCGGCCAATT
TGGCCAGTTGTTGCTCCTCCACGCGGTAGTAGTGCCAGCCCTCTTTATCT
GTCAAATCCACGGCACCAAGACTTTCGTAGAACTTGCGTGCAGGATTCCA
TTCCAGTACATTAAACTCCAGGCGAGGGCACTGAAGCTCTACAGCCCGCG
ATGCAACCTCCAAGAAGATTCGCTTTCCGGCGCCGCGTTTACGGTGCTCG
GGGCGGACATAGATGTCCTCGACGAAGAAGTACCGTCCCTGCCACGTTGA
GTATGCCTTGTAGCAAATGGAGTACCCAATCGCCTGATCAGTATCGTTGT
CTACAAGCACATAGACTTCACAATACTCCTGGCCACCAGTGAGTCCTGCG
TCTCGTTTAAGATCTTCCTCTGTTAGCTGGGGACCATTGCTCATGTCGAC
TGATAACT

BO15953.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-PA 525 CG4210-RA 97..522 444..19 2130 100 Minus
CG4210-PB 429 CG4210-RB 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 682 CG4210-RA 156..581 444..19 2130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15214426..15214744 337..19 1595 100 Minus
3R 32079331 3R 15214288..15214365 415..338 390 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:05:33 has no hits.

BO15953.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:47 Download gff for BO15953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PA 92..525 15..451 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:34 Download gff for BO15953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PB 1..429 15..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:41 Download gff for BO15953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 151..587 11..451 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:20 Download gff for BO15953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 151..587 11..451 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:20 Download gff for BO15953.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15214290..15214365 338..413 100 -> Minus
3R 15214426..15214750 11..337 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:41 Download gff for BO15953.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11040012..11040087 338..413 100 -> Minus
arm_3R 11040148..11040472 11..337 99   Minus

BO15953.5prime Sequence

458 bp (458 high quality bases) assembled on 2006-06-02

> BO15953.5prime
GAAGTTATCAGTCGACATGAGCAATGGTCCCCAGCTAACAGAGGAAGATC
TTAAACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTAT
GTGCTTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTA
CAAGGCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCT
ATGTCCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTG
GAGGTTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAA
TGTACTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCG
TGGATTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAA
CAACTGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTT
TCTAGACC

BO15953.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-PA 525 CG4210-RA 97..522 17..442 2130 100 Plus
CG4210-PB 429 CG4210-RB 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 682 CG4210-RA 156..581 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15214426..15214744 124..442 1595 100 Plus
3R 32079331 3R 15214288..15214365 46..123 390 100 Plus
Blast to na_te.dros performed on 2015-02-09 22:36:03 has no hits.

BO15953.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:48 Download gff for BO15953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PA 92..525 10..446 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:36 Download gff for BO15953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PB 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:21:49 Download gff for BO15953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 151..587 10..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:46:26 Download gff for BO15953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 151..587 10..450 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:46:26 Download gff for BO15953.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15214290..15214365 48..123 100 -> Plus
3R 15214426..15214750 124..450 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:21:49 Download gff for BO15953.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11040012..11040087 48..123 100 -> Plus
arm_3R 11040148..11040472 124..450 99   Plus

BO15953.complete Sequence

460 bp (460 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633639

> BO15953.complete
GAAGTTATCAGTCGACATGAGCAATGGTCCCCAGCTAACAGAGGAAGATC
TTAAACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTAT
GTGCTTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTA
CAAGGCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCT
ATGTCCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTG
GAGGTTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAA
TGTACTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCG
TGGATTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAA
CAACTGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTT
TCTAGACCAT

BO15953.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 525 CG4210-PA 97..522 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 682 CG4210-RA 156..581 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15214426..15214744 124..442 1595 100 Plus
3R 32079331 3R 15214288..15214365 46..123 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:25:35 has no hits.

BO15953.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:39 Download gff for BO15953.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 92..525 10..446 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:39 Download gff for BO15953.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RB 213..649 10..450 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:40 Download gff for BO15953.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 156..581 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:39 Download gff for BO15953.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RB 213..649 10..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:11 Download gff for BO15953.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 156..581 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:11 Download gff for BO15953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15214426..15214744 124..444 99   Plus
3R 15214191..15214221 17..47 100 -> Plus
3R 15214290..15214365 48..123 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:40 Download gff for BO15953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11039913..11039943 17..47 100 -> Plus
arm_3R 11040012..11040087 48..123 100 -> Plus
arm_3R 11040148..11040466 124..444 99   Plus

BO15953.pep Sequence

Translation from 16 to 460

> BO15953.pep
MSNGPQLTEEDLKRDAGLTGGQEYCEVYVLVDNDTDQAIGYSICYKAYST
WQGRYFFVEDIYVRPEHRKRGAGKRIFLEVASRAVELQCPRLEFNVLEWN
PARKFYESLGAVDLTDKEGWHYYRVEEQQLAKLAADLRAKKSASFLDH

BO15953.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-PA 174 CG4210-PA 33..174 1..142 757 100 Plus