Clone Sequence Records
BO15953.3prime Sequence
458 bp (458 high quality bases) assembled on 2006-06-02
> BO15953.3prime
ATGGTCTAGAAAGCTTGCAGATTTTTTTGCCCTCAGATCCGCGGCCAATT
TGGCCAGTTGTTGCTCCTCCACGCGGTAGTAGTGCCAGCCCTCTTTATCT
GTCAAATCCACGGCACCAAGACTTTCGTAGAACTTGCGTGCAGGATTCCA
TTCCAGTACATTAAACTCCAGGCGAGGGCACTGAAGCTCTACAGCCCGCG
ATGCAACCTCCAAGAAGATTCGCTTTCCGGCGCCGCGTTTACGGTGCTCG
GGGCGGACATAGATGTCCTCGACGAAGAAGTACCGTCCCTGCCACGTTGA
GTATGCCTTGTAGCAAATGGAGTACCCAATCGCCTGATCAGTATCGTTGT
CTACAAGCACATAGACTTCACAATACTCCTGGCCACCAGTGAGTCCTGCG
TCTCGTTTAAGATCTTCCTCTGTTAGCTGGGGACCATTGCTCATGTCGAC
TGATAACT
BO15953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-PA | 525 | CG4210-RA | 97..522 | 444..19 | 2130 | 100 | Minus |
CG4210-PB | 429 | CG4210-RB | 1..426 | 444..19 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 682 | CG4210-RA | 156..581 | 444..19 | 2130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15214426..15214744 | 337..19 | 1595 | 100 | Minus |
3R | 32079331 | 3R | 15214288..15214365 | 415..338 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:05:33 has no hits.
BO15953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:47 Download gff for
BO15953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PA | 92..525 | 15..451 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:34 Download gff for
BO15953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PB | 1..429 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:41 Download gff for
BO15953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 151..587 | 11..451 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:20 Download gff for
BO15953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 151..587 | 11..451 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:20 Download gff for
BO15953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15214290..15214365 | 338..413 | 100 | -> | Minus |
3R | 15214426..15214750 | 11..337 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:41 Download gff for
BO15953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11040012..11040087 | 338..413 | 100 | -> | Minus |
arm_3R | 11040148..11040472 | 11..337 | 99 | | Minus |
BO15953.5prime Sequence
458 bp (458 high quality bases) assembled on 2006-06-02
> BO15953.5prime
GAAGTTATCAGTCGACATGAGCAATGGTCCCCAGCTAACAGAGGAAGATC
TTAAACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTAT
GTGCTTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTA
CAAGGCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCT
ATGTCCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTG
GAGGTTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAA
TGTACTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCG
TGGATTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAA
CAACTGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTT
TCTAGACC
BO15953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-PA | 525 | CG4210-RA | 97..522 | 17..442 | 2130 | 100 | Plus |
CG4210-PB | 429 | CG4210-RB | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 682 | CG4210-RA | 156..581 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15214426..15214744 | 124..442 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 15214288..15214365 | 46..123 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:36:03 has no hits.
BO15953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:48 Download gff for
BO15953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PA | 92..525 | 10..446 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:36 Download gff for
BO15953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PB | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:21:49 Download gff for
BO15953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 151..587 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:46:26 Download gff for
BO15953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 151..587 | 10..450 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:46:26 Download gff for
BO15953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15214290..15214365 | 48..123 | 100 | -> | Plus |
3R | 15214426..15214750 | 124..450 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:21:49 Download gff for
BO15953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11040012..11040087 | 48..123 | 100 | -> | Plus |
arm_3R | 11040148..11040472 | 124..450 | 99 | | Plus |
BO15953.complete Sequence
460 bp (460 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633639
> BO15953.complete
GAAGTTATCAGTCGACATGAGCAATGGTCCCCAGCTAACAGAGGAAGATC
TTAAACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTAT
GTGCTTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTA
CAAGGCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCT
ATGTCCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTG
GAGGTTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAA
TGTACTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCG
TGGATTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAA
CAACTGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTT
TCTAGACCAT
BO15953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 525 | CG4210-PA | 97..522 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 682 | CG4210-RA | 156..581 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15214426..15214744 | 124..442 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 15214288..15214365 | 46..123 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:25:35 has no hits.
BO15953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:39 Download gff for
BO15953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 92..525 | 10..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:39 Download gff for
BO15953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RB | 213..649 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:40 Download gff for
BO15953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 156..581 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:39 Download gff for
BO15953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RB | 213..649 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:11 Download gff for
BO15953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 156..581 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:11 Download gff for
BO15953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15214426..15214744 | 124..444 | 99 | | Plus |
3R | 15214191..15214221 | 17..47 | 100 | -> | Plus |
3R | 15214290..15214365 | 48..123 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:40 Download gff for
BO15953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11039913..11039943 | 17..47 | 100 | -> | Plus |
arm_3R | 11040012..11040087 | 48..123 | 100 | -> | Plus |
arm_3R | 11040148..11040466 | 124..444 | 99 | | Plus |
BO15953.pep Sequence
Translation from 16 to 460
> BO15953.pep
MSNGPQLTEEDLKRDAGLTGGQEYCEVYVLVDNDTDQAIGYSICYKAYST
WQGRYFFVEDIYVRPEHRKRGAGKRIFLEVASRAVELQCPRLEFNVLEWN
PARKFYESLGAVDLTDKEGWHYYRVEEQQLAKLAADLRAKKSASFLDH
BO15953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-PA | 174 | CG4210-PA | 33..174 | 1..142 | 757 | 100 | Plus |