Clone Sequence Records
BO15956.3prime Sequence
725 bp (725 high quality bases) assembled on 2006-06-02
> BO15956.3prime
ATGGTCTAGAAAGCTTGCCATATAGTTAAATGAACTAAACTTCGTGGTTG
TGGCCGCCATATATTTGCCCAATGCCAAAGCCAGTAGTGAAAACTGACAT
CCTGGATAGATTTCATGGCAATCCCGTGAGCTCCGCTTGGATCGACGGTA
GATTCGATCATACTGATGATGGGCTTGTGGTTCGTGGGCAGCCACCGGGG
AGGGAGGCAGGCTAAAGACAGTCCTGACCAACTCCTGCAACATGTTTCCC
CGTTCCACCGACGGCAACATGAACTTGGCACTTTCGCATAGAGCTCGAGC
CACACACGAACGACCATTGAAACCCATGTTATCAAATAAAGACTGCACCT
CATCGTAAAAAGCTCGCCGGGATCGCCGCTTAATGGTATCCTTGGCCAGG
GTGGCGTTCAGTCCATGGGCGTGTTGGATGACCCACTGATGGTTGGGCAG
ATCGTATGCCACGCCCCAGTTGACCGCCCAGCTGAGATAGTCAACATCTG
GATTGCCAATCATGCCGATCGTCATGCAAACGGCGCCCGAAACCGATGAG
CCCTCCGGAAATGCCAGATAACGCTTGTGCCGGCGCAGAACTTTGGTCAC
CTCCCCTGTCCGGTTGGCAGCTGATGACATGGACATCACCTGGGATTGCA
CCTCGTGCAGCAGGAGGCAAAGTGCCAGCAAACTGAAGTGGCCAGTTCGA
GAGAGCCTCATGTCGACTGATAACT
BO15956.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-PA | 696 | CG13616-RA | 1..693 | 711..19 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-RA | 750 | CG13616-RA | 34..727 | 712..19 | 3470 | 100 | Minus |
CG13616-RB | 752 | CG13616-RB | 34..729 | 712..19 | 3440 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24393430..24393739 | 328..19 | 1550 | 100 | Minus |
3R | 32079331 | 3R | 24393159..24393368 | 538..329 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 24392922..24393097 | 712..537 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:37:35 has no hits.
BO15956.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:53 Download gff for
BO15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-PA | 1..696 | 16..711 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:43 Download gff for
BO15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-PA | 1..696 | 16..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:51:38 Download gff for
BO15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 34..733 | 14..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:55 Download gff for
BO15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 34..733 | 14..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:55 Download gff for
BO15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24392922..24393096 | 538..712 | 100 | -> | Minus |
3R | 24393160..24393368 | 329..537 | 100 | -> | Minus |
3R | 24393430..24393745 | 14..328 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:51:38 Download gff for
BO15956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20218644..20218818 | 538..712 | 100 | -> | Minus |
arm_3R | 20218882..20219090 | 329..537 | 100 | -> | Minus |
arm_3R | 20219152..20219467 | 14..328 | 99 | | Minus |
BO15956.5prime Sequence
725 bp (725 high quality bases) assembled on 2006-06-02
> BO15956.5prime
GAAGTTATCAGTCGACATGAGGCTCTCTCGAACTGGCCACTTCAGTTTGC
TGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAGGTGATGTCCATG
TCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGGCA
CAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTT
GCATGACGATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTGG
GCGGTCAACTGGGGCGTGGCATACGATCTGCCCAACCATCAGTGGGTCAT
CCAACACGCCCATGGACTGAACGCCACCCTGGCCAAGGATACCATTAAGC
GGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTCTTTATTTGATAAC
ATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAGTGC
CAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGG
TCAGGACTGTCTTTAGCCTGCCTCCCTCCCCGGTGGCTGCCCACGAACCA
CAAGCCCATCATCAGTATGATCGAATCTACCGTCGATCCAAGCGGAGCTC
ACGGGATTGCCATGAAATCTATCCAGGATGTCAGTTTTCACTACTGGCTT
TGGCATTGGGCAAATATATGGCGGCCACAACCACGAAGTTTAGTTCATTT
AACTATATGGCAAGCTTTCTAGACC
BO15956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-PA | 696 | CG13616-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-RA | 750 | CG13616-RA | 34..727 | 16..709 | 3470 | 100 | Plus |
CG13616-RB | 752 | CG13616-RB | 34..729 | 16..709 | 3440 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24393430..24393739 | 400..709 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 24393159..24393368 | 190..399 | 1050 | 100 | Plus |
3R | 32079331 | 3R | 24392922..24393097 | 16..191 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:34:00 has no hits.
BO15956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:54 Download gff for
BO15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-PA | 1..696 | 17..712 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:44 Download gff for
BO15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-PA | 1..696 | 17..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:40 Download gff for
BO15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 34..733 | 16..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:26 Download gff for
BO15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 34..733 | 16..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:26 Download gff for
BO15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24392922..24393096 | 16..190 | 100 | -> | Plus |
3R | 24393160..24393368 | 191..399 | 100 | -> | Plus |
3R | 24393430..24393745 | 400..714 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:40 Download gff for
BO15956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20218644..20218818 | 16..190 | 100 | -> | Plus |
arm_3R | 20218882..20219090 | 191..399 | 100 | -> | Plus |
arm_3R | 20219152..20219467 | 400..714 | 99 | | Plus |
BO15956.complete Sequence
727 bp (727 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633640
> BO15956.complete
GAAGTTATCAGTCGACATGAGGCTCTCTCGAACTGGCCACTTCAGTTTGC
TGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAGGTGATGTCCATG
TCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGGCA
CAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTT
GCATGACGATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTGG
GCGGTCAACTGGGGCGTGGCATACGATCTGCCCAACCATCAGTGGGTCAT
CCAACACGCCCATGGACTGAACGCCACCCTGGCCAAGGATACCATTAAGC
GGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTCTTTATTTGATAAC
ATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAGTGC
CAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGG
TCAGGACTGTCTTTAGCCTGCCTCCCTCCCCGGTGGCTGCCCACGAACCA
CAAGCCCATCATCAGTATGATCGAATCTACCGTCGATCCAAGCGGAGCTC
ACGGGATTGCCATGAAATCTATCCAGGATGTCAGTTTTCACTACTGGCTT
TGGCATTGGGCAAATATATGGCGGCCACAACCACGAAGTTTAGTTCATTT
AACTATATGGCAAGCTTTCTAGACCAT
BO15956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-RA | 696 | CG13616-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
CG13616-RB | 192 | CG13616-PB | 1..192 | 17..206 | 895 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-RA | 750 | CG13616-RA | 34..727 | 16..709 | 3470 | 100 | Plus |
CG13616-RB | 752 | CG13616-RB | 34..729 | 16..709 | 3415 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24393430..24393739 | 400..709 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 24393159..24393368 | 190..399 | 1050 | 100 | Plus |
3R | 32079331 | 3R | 24392922..24393097 | 16..191 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:51:58 has no hits.
BO15956.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:40 Download gff for
BO15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 1..696 | 17..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:12 Download gff for
BO15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 13..712 | 16..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:07 Download gff for
BO15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 35..727 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:40 Download gff for
BO15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 13..712 | 16..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:15 Download gff for
BO15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 35..727 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:15 Download gff for
BO15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24392923..24393096 | 17..190 | 100 | -> | Plus |
3R | 24393160..24393368 | 191..399 | 100 | -> | Plus |
3R | 24393430..24393739 | 400..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:07 Download gff for
BO15956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20218645..20218818 | 17..190 | 100 | -> | Plus |
arm_3R | 20218882..20219090 | 191..399 | 100 | -> | Plus |
arm_3R | 20219152..20219461 | 400..711 | 99 | | Plus |
BO15956.pep Sequence
Translation from 16 to 727
> BO15956.pep
MRLSRTGHFSLLALCLLLHEVQSQVMSMSSAANRTGEVTKVLRRHKRYLA
FPEGSSVSGAVCMTIGMIGNPDVDYLSWAVNWGVAYDLPNHQWVIQHAHG
LNATLAKDTIKRRSRRAFYDEVQSLFDNMGFNGRSCVARALCESAKFMLP
SVERGNMLQELVRTVFSLPPSPVAAHEPQAHHQYDRIYRRSKRSSRDCHE
IYPGCQFSLLALALGKYMAATTTKFSSFNYMASFLDH
BO15956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-PA | 231 | CG13616-PA | 1..231 | 1..231 | 1214 | 100 | Plus |
CG5768-PC | 262 | CG5768-PC | 80..253 | 42..217 | 411 | 47.8 | Plus |
CG5768-PD | 262 | CG5768-PD | 80..253 | 42..217 | 405 | 46.7 | Plus |
CG13616-PB | 63 | CG13616-PB | 1..60 | 1..60 | 287 | 98.3 | Plus |