Clone BO15956 Report

Search the DGRC for BO15956

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG13616-RA
Protein status:BO15956.pep: validated full length
Sequenced Size:727

Clone Sequence Records

BO15956.3prime Sequence

725 bp (725 high quality bases) assembled on 2006-06-02

> BO15956.3prime
ATGGTCTAGAAAGCTTGCCATATAGTTAAATGAACTAAACTTCGTGGTTG
TGGCCGCCATATATTTGCCCAATGCCAAAGCCAGTAGTGAAAACTGACAT
CCTGGATAGATTTCATGGCAATCCCGTGAGCTCCGCTTGGATCGACGGTA
GATTCGATCATACTGATGATGGGCTTGTGGTTCGTGGGCAGCCACCGGGG
AGGGAGGCAGGCTAAAGACAGTCCTGACCAACTCCTGCAACATGTTTCCC
CGTTCCACCGACGGCAACATGAACTTGGCACTTTCGCATAGAGCTCGAGC
CACACACGAACGACCATTGAAACCCATGTTATCAAATAAAGACTGCACCT
CATCGTAAAAAGCTCGCCGGGATCGCCGCTTAATGGTATCCTTGGCCAGG
GTGGCGTTCAGTCCATGGGCGTGTTGGATGACCCACTGATGGTTGGGCAG
ATCGTATGCCACGCCCCAGTTGACCGCCCAGCTGAGATAGTCAACATCTG
GATTGCCAATCATGCCGATCGTCATGCAAACGGCGCCCGAAACCGATGAG
CCCTCCGGAAATGCCAGATAACGCTTGTGCCGGCGCAGAACTTTGGTCAC
CTCCCCTGTCCGGTTGGCAGCTGATGACATGGACATCACCTGGGATTGCA
CCTCGTGCAGCAGGAGGCAAAGTGCCAGCAAACTGAAGTGGCCAGTTCGA
GAGAGCCTCATGTCGACTGATAACT

BO15956.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-PA 696 CG13616-RA 1..693 711..19 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-RA 750 CG13616-RA 34..727 712..19 3470 100 Minus
CG13616-RB 752 CG13616-RB 34..729 712..19 3440 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24393430..24393739 328..19 1550 100 Minus
3R 32079331 3R 24393159..24393368 538..329 1050 100 Minus
3R 32079331 3R 24392922..24393097 712..537 880 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:37:35 has no hits.

BO15956.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:53 Download gff for BO15956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-PA 1..696 16..711 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:43 Download gff for BO15956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-PA 1..696 16..711 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:51:38 Download gff for BO15956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 34..733 14..712 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:55 Download gff for BO15956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 34..733 14..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:55 Download gff for BO15956.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24392922..24393096 538..712 100 -> Minus
3R 24393160..24393368 329..537 100 -> Minus
3R 24393430..24393745 14..328 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:51:38 Download gff for BO15956.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20218644..20218818 538..712 100 -> Minus
arm_3R 20218882..20219090 329..537 100 -> Minus
arm_3R 20219152..20219467 14..328 99   Minus

BO15956.5prime Sequence

725 bp (725 high quality bases) assembled on 2006-06-02

> BO15956.5prime
GAAGTTATCAGTCGACATGAGGCTCTCTCGAACTGGCCACTTCAGTTTGC
TGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAGGTGATGTCCATG
TCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGGCA
CAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTT
GCATGACGATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTGG
GCGGTCAACTGGGGCGTGGCATACGATCTGCCCAACCATCAGTGGGTCAT
CCAACACGCCCATGGACTGAACGCCACCCTGGCCAAGGATACCATTAAGC
GGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTCTTTATTTGATAAC
ATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAGTGC
CAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGG
TCAGGACTGTCTTTAGCCTGCCTCCCTCCCCGGTGGCTGCCCACGAACCA
CAAGCCCATCATCAGTATGATCGAATCTACCGTCGATCCAAGCGGAGCTC
ACGGGATTGCCATGAAATCTATCCAGGATGTCAGTTTTCACTACTGGCTT
TGGCATTGGGCAAATATATGGCGGCCACAACCACGAAGTTTAGTTCATTT
AACTATATGGCAAGCTTTCTAGACC

BO15956.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-PA 696 CG13616-RA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-RA 750 CG13616-RA 34..727 16..709 3470 100 Plus
CG13616-RB 752 CG13616-RB 34..729 16..709 3440 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24393430..24393739 400..709 1550 100 Plus
3R 32079331 3R 24393159..24393368 190..399 1050 100 Plus
3R 32079331 3R 24392922..24393097 16..191 880 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:34:00 has no hits.

BO15956.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:56:54 Download gff for BO15956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-PA 1..696 17..712 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:44 Download gff for BO15956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-PA 1..696 17..712 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:40 Download gff for BO15956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 34..733 16..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:26 Download gff for BO15956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 34..733 16..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:26 Download gff for BO15956.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24392922..24393096 16..190 100 -> Plus
3R 24393160..24393368 191..399 100 -> Plus
3R 24393430..24393745 400..714 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:40 Download gff for BO15956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20218644..20218818 16..190 100 -> Plus
arm_3R 20218882..20219090 191..399 100 -> Plus
arm_3R 20219152..20219467 400..714 99   Plus

BO15956.complete Sequence

727 bp (727 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633640

> BO15956.complete
GAAGTTATCAGTCGACATGAGGCTCTCTCGAACTGGCCACTTCAGTTTGC
TGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAGGTGATGTCCATG
TCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGGCA
CAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTT
GCATGACGATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTGG
GCGGTCAACTGGGGCGTGGCATACGATCTGCCCAACCATCAGTGGGTCAT
CCAACACGCCCATGGACTGAACGCCACCCTGGCCAAGGATACCATTAAGC
GGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTCTTTATTTGATAAC
ATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAGTGC
CAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGG
TCAGGACTGTCTTTAGCCTGCCTCCCTCCCCGGTGGCTGCCCACGAACCA
CAAGCCCATCATCAGTATGATCGAATCTACCGTCGATCCAAGCGGAGCTC
ACGGGATTGCCATGAAATCTATCCAGGATGTCAGTTTTCACTACTGGCTT
TGGCATTGGGCAAATATATGGCGGCCACAACCACGAAGTTTAGTTCATTT
AACTATATGGCAAGCTTTCTAGACCAT

BO15956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-RA 696 CG13616-PA 1..693 17..709 3465 100 Plus
CG13616-RB 192 CG13616-PB 1..192 17..206 895 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-RA 750 CG13616-RA 34..727 16..709 3470 100 Plus
CG13616-RB 752 CG13616-RB 34..729 16..709 3415 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24393430..24393739 400..709 1550 100 Plus
3R 32079331 3R 24393159..24393368 190..399 1050 100 Plus
3R 32079331 3R 24392922..24393097 16..191 880 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:51:58 has no hits.

BO15956.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:40 Download gff for BO15956.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 1..696 17..712 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:12 Download gff for BO15956.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 13..712 16..714 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:07 Download gff for BO15956.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 35..727 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:40 Download gff for BO15956.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 13..712 16..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:15 Download gff for BO15956.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 35..727 17..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:15 Download gff for BO15956.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24392923..24393096 17..190 100 -> Plus
3R 24393160..24393368 191..399 100 -> Plus
3R 24393430..24393739 400..711 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:07 Download gff for BO15956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20218645..20218818 17..190 100 -> Plus
arm_3R 20218882..20219090 191..399 100 -> Plus
arm_3R 20219152..20219461 400..711 99   Plus

BO15956.pep Sequence

Translation from 16 to 727

> BO15956.pep
MRLSRTGHFSLLALCLLLHEVQSQVMSMSSAANRTGEVTKVLRRHKRYLA
FPEGSSVSGAVCMTIGMIGNPDVDYLSWAVNWGVAYDLPNHQWVIQHAHG
LNATLAKDTIKRRSRRAFYDEVQSLFDNMGFNGRSCVARALCESAKFMLP
SVERGNMLQELVRTVFSLPPSPVAAHEPQAHHQYDRIYRRSKRSSRDCHE
IYPGCQFSLLALALGKYMAATTTKFSSFNYMASFLDH

BO15956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-PA 231 CG13616-PA 1..231 1..231 1214 100 Plus
CG5768-PC 262 CG5768-PC 80..253 42..217 411 47.8 Plus
CG5768-PD 262 CG5768-PD 80..253 42..217 405 46.7 Plus
CG13616-PB 63 CG13616-PB 1..60 1..60 287 98.3 Plus