Clone Sequence Records
BO15962.3prime Sequence
221 bp (221 high quality bases) assembled on 2006-06-02
> BO15962.3prime
ATGGTCTAGAAAGCTTGCACGTTGTCCTGCGTTGCTCTGCGGTCTCATTC
CCGTCGACGATCCCCGTCCTGGGCCGTAAAATGTCAAATTAATGTTACAA
CATGTCCAGCGATTTCTGATGGCATTTGACAATGTCGAGTGGAAATTCCT
GCAGGTGACGCAATTTCCCTGTAATTTGTTTGGCCGCACGTACCGTCGCC
ACGACATGTCGACTGATAACT
BO15962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-PA | 192 | CG31517-RA | 1..189 | 207..19 | 945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-RB | 1185 | CG31517-RB | 415..604 | 208..19 | 950 | 100 | Minus |
CG31517-RA | 827 | CG31517-RA | 415..604 | 208..19 | 950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13948834..13948998 | 208..44 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:14:39 has no hits.
BO15962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:01 Download gff for
BO15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-PA | 1..192 | 15..207 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:53 Download gff for
BO15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-PA | 1..192 | 15..207 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:36:55 Download gff for
BO15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 400..592 | 15..208 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:43:03 Download gff for
BO15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 415..607 | 15..208 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:43:03 Download gff for
BO15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13948834..13948998 | 44..208 | 100 | -> | Minus |
3R | 13949083..13949110 | 15..43 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:36:55 Download gff for
BO15962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9774556..9774720 | 44..208 | 100 | -> | Minus |
arm_3R | 9774805..9774832 | 15..43 | 93 | | Minus |
BO15962.5prime Sequence
221 bp (221 high quality bases) assembled on 2006-06-02
> BO15962.5prime
GAAGTTATCAGTCGACATGTCGTGGCGACGGTACGTGCGGCCAAACAAAT
TACAGGGAAATTGCGTCACCTGCAGGAATTTCCACTCGACATTGTCAAAT
GCCATCAGAAATCGCTGGACATGTTGTAACATTAATTTGACATTTTACGG
CCCAGGACGGGGATCGTCGACGGGAATGAGACCGCAGAGCAACGCAGGAC
AACGTGCAAGCTTTCTAGACC
BO15962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-PA | 192 | CG31517-RA | 1..189 | 17..205 | 945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-RB | 1185 | CG31517-RB | 415..604 | 16..205 | 950 | 100 | Plus |
CG31517-RA | 827 | CG31517-RA | 415..604 | 16..205 | 950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13948834..13948998 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:08:57 has no hits.
BO15962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:02 Download gff for
BO15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-PA | 1..192 | 17..209 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:54 Download gff for
BO15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-PA | 1..192 | 17..209 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:18 Download gff for
BO15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 400..592 | 16..209 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:19 Download gff for
BO15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 415..607 | 16..209 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:19 Download gff for
BO15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13948834..13948998 | 16..180 | 100 | -> | Plus |
3R | 13949083..13949110 | 181..209 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:18 Download gff for
BO15962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9774556..9774720 | 16..180 | 100 | -> | Plus |
arm_3R | 9774805..9774832 | 181..209 | 93 | | Plus |
BO15962.complete Sequence
223 bp (223 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633641
> BO15962.complete
GAAGTTATCAGTCGACATGTCGTGGCGACGGTACGTGCGGCCAAACAAAT
TACAGGGAAATTGCGTCACCTGCAGGAATTTCCACTCGACATTGTCAAAT
GCCATCAGAAATCGCTGGACATGTTGTAACATTAATTTGACATTTTACGG
CCCAGGACGGGGATCGTCGACGGGAATGAGACCGCAGAGCAACGCAGGAC
AACGTGCAAGCTTTCTAGACCAT
BO15962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-RB | 192 | CG31517-PB | 1..189 | 17..205 | 945 | 100 | Plus |
CG31517-RA | 192 | CG31517-PA | 1..189 | 17..205 | 945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-RB | 1185 | CG31517-RB | 415..604 | 16..205 | 950 | 100 | Plus |
CG31517-RA | 827 | CG31517-RA | 415..604 | 16..205 | 950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13948834..13948998 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:35:24 has no hits.
BO15962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:41 Download gff for
BO15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 1..192 | 17..209 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:14 Download gff for
BO15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 400..592 | 16..209 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:36 Download gff for
BO15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 401..589 | 17..207 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:41 Download gff for
BO15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 400..592 | 16..209 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:30 Download gff for
BO15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 416..604 | 17..207 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:30 Download gff for
BO15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13948835..13948998 | 17..180 | 100 | -> | Plus |
3R | 13949083..13949107 | 181..207 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:36 Download gff for
BO15962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9774557..9774720 | 17..180 | 100 | -> | Plus |
arm_3R | 9774805..9774829 | 181..207 | 92 | | Plus |
BO15962.pep Sequence
Translation from 16 to 223
> BO15962.pep
MSWRRYVRPNKLQGNCVTCRNFHSTLSNAIRNRWTCCNINLTFYGPGRGS
STGMRPQSNAGQRASFLDH
BO15962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-PB | 63 | CG31517-PB | 1..63 | 1..63 | 357 | 100 | Plus |
CG31517-PA | 63 | CG31517-PA | 1..63 | 1..63 | 357 | 100 | Plus |