Clone BO15965 Report

Search the DGRC for BO15965

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG4362-RA
Protein status:BO15965.pep: validated full length
Sequenced Size:733

Clone Sequence Records

BO15965.3prime Sequence

731 bp (731 high quality bases) assembled on 2006-06-02

> BO15965.3prime
ATGGTCTAGAAAGCTTGCGGCGACCTCAACCGGAGCCACTGGATCTCCGC
CACCGACCAATTCCTTGACCAGGTTGCGACCCCAGTAGATGCTCACATCG
GCGCAGTTCTTGAATGTTTCCTGTGGGCCACAGCCCAAGGCTCCGTTTCC
GGAATTATCGCAGATGCCCCAGTTGTTGGCACCCACATAGGTCCAGCGGA
GGACGCAGTGAGAGCAGGTAAGACCCTCCGGCAGGACGACTGTCACATCG
AATTCGCCCATCTGATCGCCGATATCCTTTCTATCGCTTCCATCGATGAA
TCGCAGGCGGTTCTGATCGAAGCACTCCTCCGACTCGGCACCGAAGGCGT
CCAGGTTGCACAGGTGGAACTCGAAGTAACCCAAGTGATTGGTGGTGATC
TTCACGCCCACGGTGATGGTATTGCCAGCAACGTAGCTCCTGGTCACCAC
ACCAGCTCCACCGATGCTTCCTCCGATCTCGTTGGCACGGGGCTGGGCAT
CCAGGAAGTTGTCGCCGCACAGACCACAGCGACCTCCATTGTTGGACTGC
GTGTACAAACCGCCGCAGAAGAGTTCGTTGTCGTTCCAGTTCTGGGGTGC
GGATCCATCGTAGCGCCAACGGGAGGATCGGCTCGGCGGGGACAGCATCA
TGCCGTGGGCGTCGATCTGCTGCAGCCCGATGGCCAGCAGCAAGGTCATG
CTGAGCAGGTACTTCATGTCGACTGATAACT

BO15965.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-PA 702 CG4362-RA 1..699 717..19 3470 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-RA 829 CG4362-RA 30..729 718..19 3485 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20306544..20306916 180..552 1850 99.7 Plus
3R 32079331 3R 20307343..20307508 553..718 830 100 Plus
3R 32079331 3R 20306316..20306477 19..180 810 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:05:39 has no hits.

BO15965.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:03 Download gff for BO15965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-PA 1..702 16..717 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:56 Download gff for BO15965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-PA 1..702 16..717 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:11 Download gff for BO15965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 26..732 15..725 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:55 Download gff for BO15965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 27..733 15..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:55 Download gff for BO15965.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20306311..20306476 15..179 98 <- Plus
3R 20306544..20306916 180..552 99 <- Plus
3R 20307343..20307511 553..725 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:11 Download gff for BO15965.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16132033..16132198 15..179 98 <- Plus
arm_3R 16132266..16132638 180..552 99 <- Plus
arm_3R 16133065..16133233 553..725 97   Plus

BO15965.5prime Sequence

731 bp (731 high quality bases) assembled on 2006-06-02

> BO15965.5prime
GAAGTTATCAGTCGACATGAAGTACCTGCTCAGCATGACCTTGCTGCTGG
CCATCGGGCTGCAGCAGATCGACGCCCACGGCATGATGCTGTCCCCGCCG
AGCCGATCCTCCCGTTGGCGCTACGATGGATCCGCACCCCAGAACTGGAA
CGACAACGAACTCTTCTGCGGCGGTTTGTACACGCAGTCCAACAATGGAG
GTCGCTGTGGTCTGTGCGGCGACAACTTCCTGGATGCCCAGCCCCGTGCC
AACGAGATCGGAGGAAGCATCGGTGGAGCTGGTGTGGTGACCAGGAGCTA
CGTTGCTGGCAATACCATCACCGTGGGCGTGAAGATCACCACCAATCACT
TGGGTTACTTCGAGTTCCACCTGTGCAACCTGGACGCCTTCGGTGCCGAG
TCGGAGGAGTGCTTCGATCAGAACCGCCTGCGATTCATCGATGGAAGCGA
TAGAAAGGATATCGGCGATCAGATGGGCGAATTCGATGTGACAGTCGTCC
TGCCGGAGGGTCTTACCTGCTCTCACTGCGTCCTCCGCTGGACCTATGTG
GGTGCCAACAACTGGGGCATCTGCGATAATTCCGGAAACGGAGCCTTGGG
CTGTGGCCCACAGGAAACATTCAAGAACTGCGCCGATGTGAGCATCTACT
GGGGTCGCAACCTGGTCAAGGAATTGGTCGGTGGCGGAGATCCAGTGGCT
CCGGTTGAGGTCGCCGCAAGCTTTCTAGACC

BO15965.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-PA 702 CG4362-RA 1..699 17..715 3470 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-RA 829 CG4362-RA 30..729 16..715 3485 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20306544..20306916 554..182 1850 99.7 Minus
3R 32079331 3R 20307343..20307508 181..16 830 100 Minus
3R 32079331 3R 20306316..20306477 715..554 810 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:39:09 has no hits.

BO15965.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:04 Download gff for BO15965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-PA 1..702 17..718 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:57 Download gff for BO15965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-PA 1..702 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:10 Download gff for BO15965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 26..732 9..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:40 Download gff for BO15965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 27..733 9..719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:40 Download gff for BO15965.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20306311..20306476 555..719 98 <- Minus
3R 20306544..20306916 182..554 99 <- Minus
3R 20307343..20307511 9..181 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:10 Download gff for BO15965.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16132033..16132198 555..719 98 <- Minus
arm_3R 16132266..16132638 182..554 99 <- Minus
arm_3R 16133065..16133233 9..181 97   Minus

BO15965.complete Sequence

733 bp (733 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633642

> BO15965.complete
GAAGTTATCAGTCGACATGAAGTACCTGCTCAGCATGACCTTGCTGCTGG
CCATCGGGCTGCAGCAGATCGACGCCCACGGCATGATGCTGTCCCCGCCG
AGCCGATCCTCCCGTTGGCGCTACGATGGATCCGCACCCCAGAACTGGAA
CGACAACGAACTCTTCTGCGGCGGTTTGTACACGCAGTCCAACAATGGAG
GTCGCTGTGGTCTGTGCGGCGACAACTTCCTGGATGCCCAGCCCCGTGCC
AACGAGATCGGAGGAAGCATCGGTGGAGCTGGTGTGGTGACCAGGAGCTA
CGTTGCTGGCAATACCATCACCGTGGGCGTGAAGATCACCACCAATCACT
TGGGTTACTTCGAGTTCCACCTGTGCAACCTGGACGCCTTCGGTGCCGAG
TCGGAGGAGTGCTTCGATCAGAACCGCCTGCGATTCATCGATGGAAGCGA
TAGAAAGGATATCGGCGATCAGATGGGCGAATTCGATGTGACAGTCGTCC
TGCCGGAGGGTCTTACCTGCTCTCACTGCGTCCTCCGCTGGACCTATGTG
GGTGCCAACAACTGGGGCATCTGCGATAATTCCGGAAACGGAGCCTTGGG
CTGTGGCCCACAGGAAACATTCAAGAACTGCGCCGATGTGAGCATCTACT
GGGGTCGCAACCTGGTCAAGGAATTGGTCGGTGGCGGAGATCCAGTGGCT
CCGGTTGAGGTCGCCGCAAGCTTTCTAGACCAT

BO15965.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-RA 702 CG4362-PA 1..699 17..715 3480 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-RA 829 CG4362-RA 30..729 16..715 3485 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20306544..20306916 554..182 1850 99.7 Minus
3R 32079331 3R 20307343..20307508 181..16 830 100 Minus
3R 32079331 3R 20306316..20306477 715..554 810 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:55:13 has no hits.

BO15965.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:16 Download gff for BO15965.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 1..702 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:36 Download gff for BO15965.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 10..715 9..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:02 Download gff for BO15965.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 30..728 17..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:16 Download gff for BO15965.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 10..715 9..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:49 Download gff for BO15965.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 31..729 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:49 Download gff for BO15965.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20306544..20306916 182..554 99 <- Minus
3R 20307343..20307507 17..181 100   Minus
3R 20306313..20306476 555..717 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:02 Download gff for BO15965.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16132035..16132198 555..717 98 <- Minus
arm_3R 16132266..16132638 182..554 99 <- Minus
arm_3R 16133065..16133229 17..181 100   Minus

BO15965.pep Sequence

Translation from 16 to 733

> BO15965.pep
MKYLLSMTLLLAIGLQQIDAHGMMLSPPSRSSRWRYDGSAPQNWNDNELF
CGGLYTQSNNGGRCGLCGDNFLDAQPRANEIGGSIGGAGVVTRSYVAGNT
ITVGVKITTNHLGYFEFHLCNLDAFGAESEECFDQNRLRFIDGSDRKDIG
DQMGEFDVTVVLPEGLTCSHCVLRWTYVGANNWGICDNSGNGALGCGPQE
TFKNCADVSIYWGRNLVKELVGGGDPVAPVEVAASFLDH

BO15965.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-PA 233 CG4362-PA 1..233 1..233 1275 100 Plus
CG4367-PB 219 CG4367-PB 9..218 17..235 638 53.2 Plus
CG4367-PA 219 CG4367-PA 9..218 17..235 638 53.2 Plus
CG42598-PB 340 CG42598-PB 10..224 1..210 440 38.7 Plus
CG41284-PC 340 CG41284-PC 10..224 1..210 432 38.3 Plus