Clone Sequence Records
BO15965.3prime Sequence
731 bp (731 high quality bases) assembled on 2006-06-02
> BO15965.3prime
ATGGTCTAGAAAGCTTGCGGCGACCTCAACCGGAGCCACTGGATCTCCGC
CACCGACCAATTCCTTGACCAGGTTGCGACCCCAGTAGATGCTCACATCG
GCGCAGTTCTTGAATGTTTCCTGTGGGCCACAGCCCAAGGCTCCGTTTCC
GGAATTATCGCAGATGCCCCAGTTGTTGGCACCCACATAGGTCCAGCGGA
GGACGCAGTGAGAGCAGGTAAGACCCTCCGGCAGGACGACTGTCACATCG
AATTCGCCCATCTGATCGCCGATATCCTTTCTATCGCTTCCATCGATGAA
TCGCAGGCGGTTCTGATCGAAGCACTCCTCCGACTCGGCACCGAAGGCGT
CCAGGTTGCACAGGTGGAACTCGAAGTAACCCAAGTGATTGGTGGTGATC
TTCACGCCCACGGTGATGGTATTGCCAGCAACGTAGCTCCTGGTCACCAC
ACCAGCTCCACCGATGCTTCCTCCGATCTCGTTGGCACGGGGCTGGGCAT
CCAGGAAGTTGTCGCCGCACAGACCACAGCGACCTCCATTGTTGGACTGC
GTGTACAAACCGCCGCAGAAGAGTTCGTTGTCGTTCCAGTTCTGGGGTGC
GGATCCATCGTAGCGCCAACGGGAGGATCGGCTCGGCGGGGACAGCATCA
TGCCGTGGGCGTCGATCTGCTGCAGCCCGATGGCCAGCAGCAAGGTCATG
CTGAGCAGGTACTTCATGTCGACTGATAACT
BO15965.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-PA | 702 | CG4362-RA | 1..699 | 717..19 | 3470 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-RA | 829 | CG4362-RA | 30..729 | 718..19 | 3485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20306544..20306916 | 180..552 | 1850 | 99.7 | Plus |
3R | 32079331 | 3R | 20307343..20307508 | 553..718 | 830 | 100 | Plus |
3R | 32079331 | 3R | 20306316..20306477 | 19..180 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:05:39 has no hits.
BO15965.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:03 Download gff for
BO15965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-PA | 1..702 | 16..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:56 Download gff for
BO15965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-PA | 1..702 | 16..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:11 Download gff for
BO15965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 26..732 | 15..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:55 Download gff for
BO15965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 27..733 | 15..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:55 Download gff for
BO15965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20306311..20306476 | 15..179 | 98 | <- | Plus |
3R | 20306544..20306916 | 180..552 | 99 | <- | Plus |
3R | 20307343..20307511 | 553..725 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:11 Download gff for
BO15965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16132033..16132198 | 15..179 | 98 | <- | Plus |
arm_3R | 16132266..16132638 | 180..552 | 99 | <- | Plus |
arm_3R | 16133065..16133233 | 553..725 | 97 | | Plus |
BO15965.5prime Sequence
731 bp (731 high quality bases) assembled on 2006-06-02
> BO15965.5prime
GAAGTTATCAGTCGACATGAAGTACCTGCTCAGCATGACCTTGCTGCTGG
CCATCGGGCTGCAGCAGATCGACGCCCACGGCATGATGCTGTCCCCGCCG
AGCCGATCCTCCCGTTGGCGCTACGATGGATCCGCACCCCAGAACTGGAA
CGACAACGAACTCTTCTGCGGCGGTTTGTACACGCAGTCCAACAATGGAG
GTCGCTGTGGTCTGTGCGGCGACAACTTCCTGGATGCCCAGCCCCGTGCC
AACGAGATCGGAGGAAGCATCGGTGGAGCTGGTGTGGTGACCAGGAGCTA
CGTTGCTGGCAATACCATCACCGTGGGCGTGAAGATCACCACCAATCACT
TGGGTTACTTCGAGTTCCACCTGTGCAACCTGGACGCCTTCGGTGCCGAG
TCGGAGGAGTGCTTCGATCAGAACCGCCTGCGATTCATCGATGGAAGCGA
TAGAAAGGATATCGGCGATCAGATGGGCGAATTCGATGTGACAGTCGTCC
TGCCGGAGGGTCTTACCTGCTCTCACTGCGTCCTCCGCTGGACCTATGTG
GGTGCCAACAACTGGGGCATCTGCGATAATTCCGGAAACGGAGCCTTGGG
CTGTGGCCCACAGGAAACATTCAAGAACTGCGCCGATGTGAGCATCTACT
GGGGTCGCAACCTGGTCAAGGAATTGGTCGGTGGCGGAGATCCAGTGGCT
CCGGTTGAGGTCGCCGCAAGCTTTCTAGACC
BO15965.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-PA | 702 | CG4362-RA | 1..699 | 17..715 | 3470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-RA | 829 | CG4362-RA | 30..729 | 16..715 | 3485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20306544..20306916 | 554..182 | 1850 | 99.7 | Minus |
3R | 32079331 | 3R | 20307343..20307508 | 181..16 | 830 | 100 | Minus |
3R | 32079331 | 3R | 20306316..20306477 | 715..554 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:39:09 has no hits.
BO15965.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:04 Download gff for
BO15965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-PA | 1..702 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:02:57 Download gff for
BO15965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-PA | 1..702 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:10 Download gff for
BO15965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 26..732 | 9..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:40 Download gff for
BO15965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 27..733 | 9..719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:40 Download gff for
BO15965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20306311..20306476 | 555..719 | 98 | <- | Minus |
3R | 20306544..20306916 | 182..554 | 99 | <- | Minus |
3R | 20307343..20307511 | 9..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:10 Download gff for
BO15965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16132033..16132198 | 555..719 | 98 | <- | Minus |
arm_3R | 16132266..16132638 | 182..554 | 99 | <- | Minus |
arm_3R | 16133065..16133233 | 9..181 | 97 | | Minus |
BO15965.complete Sequence
733 bp (733 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633642
> BO15965.complete
GAAGTTATCAGTCGACATGAAGTACCTGCTCAGCATGACCTTGCTGCTGG
CCATCGGGCTGCAGCAGATCGACGCCCACGGCATGATGCTGTCCCCGCCG
AGCCGATCCTCCCGTTGGCGCTACGATGGATCCGCACCCCAGAACTGGAA
CGACAACGAACTCTTCTGCGGCGGTTTGTACACGCAGTCCAACAATGGAG
GTCGCTGTGGTCTGTGCGGCGACAACTTCCTGGATGCCCAGCCCCGTGCC
AACGAGATCGGAGGAAGCATCGGTGGAGCTGGTGTGGTGACCAGGAGCTA
CGTTGCTGGCAATACCATCACCGTGGGCGTGAAGATCACCACCAATCACT
TGGGTTACTTCGAGTTCCACCTGTGCAACCTGGACGCCTTCGGTGCCGAG
TCGGAGGAGTGCTTCGATCAGAACCGCCTGCGATTCATCGATGGAAGCGA
TAGAAAGGATATCGGCGATCAGATGGGCGAATTCGATGTGACAGTCGTCC
TGCCGGAGGGTCTTACCTGCTCTCACTGCGTCCTCCGCTGGACCTATGTG
GGTGCCAACAACTGGGGCATCTGCGATAATTCCGGAAACGGAGCCTTGGG
CTGTGGCCCACAGGAAACATTCAAGAACTGCGCCGATGTGAGCATCTACT
GGGGTCGCAACCTGGTCAAGGAATTGGTCGGTGGCGGAGATCCAGTGGCT
CCGGTTGAGGTCGCCGCAAGCTTTCTAGACCAT
BO15965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-RA | 702 | CG4362-PA | 1..699 | 17..715 | 3480 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-RA | 829 | CG4362-RA | 30..729 | 16..715 | 3485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20306544..20306916 | 554..182 | 1850 | 99.7 | Minus |
3R | 32079331 | 3R | 20307343..20307508 | 181..16 | 830 | 100 | Minus |
3R | 32079331 | 3R | 20306316..20306477 | 715..554 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:55:13 has no hits.
BO15965.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:16 Download gff for
BO15965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 1..702 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:36 Download gff for
BO15965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 10..715 | 9..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:02 Download gff for
BO15965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 30..728 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:16 Download gff for
BO15965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 10..715 | 9..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:49 Download gff for
BO15965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 31..729 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:49 Download gff for
BO15965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20306544..20306916 | 182..554 | 99 | <- | Minus |
3R | 20307343..20307507 | 17..181 | 100 | | Minus |
3R | 20306313..20306476 | 555..717 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:02 Download gff for
BO15965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16132035..16132198 | 555..717 | 98 | <- | Minus |
arm_3R | 16132266..16132638 | 182..554 | 99 | <- | Minus |
arm_3R | 16133065..16133229 | 17..181 | 100 | | Minus |
BO15965.pep Sequence
Translation from 16 to 733
> BO15965.pep
MKYLLSMTLLLAIGLQQIDAHGMMLSPPSRSSRWRYDGSAPQNWNDNELF
CGGLYTQSNNGGRCGLCGDNFLDAQPRANEIGGSIGGAGVVTRSYVAGNT
ITVGVKITTNHLGYFEFHLCNLDAFGAESEECFDQNRLRFIDGSDRKDIG
DQMGEFDVTVVLPEGLTCSHCVLRWTYVGANNWGICDNSGNGALGCGPQE
TFKNCADVSIYWGRNLVKELVGGGDPVAPVEVAASFLDH
BO15965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-PA | 233 | CG4362-PA | 1..233 | 1..233 | 1275 | 100 | Plus |
CG4367-PB | 219 | CG4367-PB | 9..218 | 17..235 | 638 | 53.2 | Plus |
CG4367-PA | 219 | CG4367-PA | 9..218 | 17..235 | 638 | 53.2 | Plus |
CG42598-PB | 340 | CG42598-PB | 10..224 | 1..210 | 440 | 38.7 | Plus |
CG41284-PC | 340 | CG41284-PC | 10..224 | 1..210 | 432 | 38.3 | Plus |