Clone BO15968 Report

Search the DGRC for BO15968

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCyt-c-d-RA
Protein status:BO15968.pep: validated full length
Sequenced Size:349

Clone Sequence Records

BO15968.3prime Sequence

347 bp (347 high quality bases) assembled on 2006-06-02

> BO15968.3prime
ATGGTCTAGAAAGCTTGCCTTGTTTGACTTGAGGAAGGCAATCAAATCGG
CCCGCTCCTCAGCCTTTTTAAGACCTGCGAACACCATCTTTGTTCCGGGA
ATGTATTTCTTCGGGTCCTTGAGGTACTCGTCCAAATTCCCCTCTGTCCA
GGTAACGCCCTTCTTTATATTGGCATCGGTATACTTGTATCCCGCTGCTG
TGCCACACTTGCGACCCACGACCCCGCCAAGATTTGGGCCCACCTTGTGT
TTGCCGCCCACTTCGTAGGTGTGGCACTGGGCGCACTTCTGCACAAATAT
CTTCTTGCCGTTCTCTGCATCACCAGAACCCATGTCGACTGATAACT

BO15968.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13263-PA 318 Cyt-c-d-RA 1..315 333..19 1575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-RB 767 CG13263-RB 267..581 333..19 1575 100 Minus
Cyt-c-d-RA 837 CG13263-RA 337..651 333..19 1575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16719135..16719449 333..19 1575 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:35:12 has no hits.

BO15968.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:09 Download gff for BO15968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13263-PA 1..318 18..333 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:05 Download gff for BO15968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13263-PA 1..318 18..333 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:59:54 Download gff for BO15968.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..651 19..333 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:13:01 Download gff for BO15968.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..651 19..333 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:13:01 Download gff for BO15968.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16719135..16719449 19..333 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:59:54 Download gff for BO15968.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16719135..16719449 19..333 100   Minus

BO15968.5prime Sequence

347 bp (347 high quality bases) assembled on 2006-06-02

> BO15968.5prime
GAAGTTATCAGTCGACATGGGTTCTGGTGATGCAGAGAACGGCAAGAAGA
TATTTGTGCAGAAGTGCGCCCAGTGCCACACCTACGAAGTGGGCGGCAAA
CACAAGGTGGGCCCAAATCTTGGCGGGGTCGTGGGTCGCAAGTGTGGCAC
AGCAGCGGGATACAAGTATACCGATGCCAATATAAAGAAGGGCGTTACCT
GGACAGAGGGGAATTTGGACGAGTACCTCAAGGACCCGAAGAAATACATT
CCCGGAACAAAGATGGTGTTCGCAGGTCTTAAAAAGGCTGAGGAGCGGGC
CGATTTGATTGCCTTCCTCAAGTCAAACAAGGCAAGCTTTCTAGACC

BO15968.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13263-PA 318 Cyt-c-d-RA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-RB 767 CG13263-RB 267..581 17..331 1575 100 Plus
Cyt-c-d-RA 837 CG13263-RA 337..651 17..331 1575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16719135..16719449 17..331 1575 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:40:09 has no hits.

BO15968.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:11 Download gff for BO15968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13263-PA 1..318 17..332 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:07 Download gff for BO15968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13263-PA 1..318 17..332 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:17 Download gff for BO15968.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..651 17..331 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:48 Download gff for BO15968.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..651 17..331 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:48 Download gff for BO15968.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16719135..16719449 17..331 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:17 Download gff for BO15968.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16719135..16719449 17..331 100   Plus

BO15968.complete Sequence

349 bp (349 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633644

> BO15968.complete
GAAGTTATCAGTCGACATGGGTTCTGGTGATGCAGAGAACGGCAAGAAGA
TATTTGTGCAGAAGTGCGCCCAGTGCCACACCTACGAAGTGGGCGGCAAA
CACAAGGTGGGCCCAAATCTTGGCGGGGTCGTGGGTCGCAAGTGTGGCAC
AGCAGCGGGATACAAGTATACCGATGCCAATATAAAGAAGGGCGTTACCT
GGACAGAGGGGAATTTGGACGAGTACCTCAAGGACCCGAAGAAATACATT
CCCGGAACAAAGATGGTGTTCGCAGGTCTTAAAAAGGCTGAGGAGCGGGC
CGATTTGATTGCCTTCCTCAAGTCAAACAAGGCAAGCTTTCTAGACCAT

BO15968.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-RB 318 CG13263-PB 1..315 17..331 1575 100 Plus
Cyt-c-d-RA 318 CG13263-PA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-RB 767 CG13263-RB 267..581 17..331 1575 100 Plus
Cyt-c-d-RA 837 CG13263-RA 337..651 17..331 1575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16719135..16719449 17..331 1575 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:57:56 has no hits.

BO15968.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:35 Download gff for BO15968.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 1..318 17..332 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:36 Download gff for BO15968.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 370..684 17..331 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:06 Download gff for BO15968.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..651 17..333 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:35 Download gff for BO15968.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 370..684 17..331 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:08 Download gff for BO15968.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..651 17..333 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:08 Download gff for BO15968.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16719135..16719449 17..333 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:06 Download gff for BO15968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16719135..16719449 17..333 99   Plus

BO15968.pep Sequence

Translation from 16 to 349

> BO15968.pep
MGSGDAENGKKIFVQKCAQCHTYEVGGKHKVGPNLGGVVGRKCGTAAGYK
YTDANIKKGVTWTEGNLDEYLKDPKKYIPGTKMVFAGLKKAEERADLIAF
LKSNKASFLDH

BO15968.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-PB 105 CG13263-PB 1..105 1..105 565 100 Plus
Cyt-c-d-PA 105 CG13263-PA 1..105 1..105 565 100 Plus
Cyt-c-p-PB 108 CG17903-PB 5..105 3..103 407 72.3 Plus
Cyt-c-p-PA 108 CG17903-PA 5..105 3..103 407 72.3 Plus