Clone Sequence Records
BO15969.3prime Sequence
794 bp (707 high quality bases) assembled on 2006-06-02
> BO15969.3prime
ATGGTCTAGAAAGCTTGCGTTTAACAAATTCAAAAGCTGCTTGAACTGAT
CTTCGACGTTTAAAGGTGCCTCGGTGGTGGTTGGTGGTTCGGTGGGTGCC
TCGGTGGTCGTGGTAGTGGTGGTGGTGGTGGTCGATGTGGAGGTCGTGGA
TGTGGGCTTGGGCATGGGCTTCGGCTTAGCGCGACCATCCAGACAGGCCT
GCAGGTAGTTGTAGTTCCTGGCAGTGGACTCCACGTAGTGCCGCTCCGCC
CTCTGGCAGCACTGCCCATGGCGCAGATCTACCACTCGGTAGCGTTCCTC
CAGCACGCTGGCCGACTCCGAGGCGTTACCCGAGATGCTGTATGTGGAGA
CAGTGTTGTTGGAGCCCACATTGGCATGACATTGAAAGGATTCGAGGGTT
GTGTTGAGCTCGTTGCAAGCCCTGAGCTCGCTGCAAACTCTTTCGGATGA
AAGTCGGATAGTCCGGCGAGTGGCCAGGAAGTCGGCATCGATACCCTTCC
TGGAGTCCGCCGCCGCATTGTAGCATTTGGTGTAGTTGGCACTGTACAGC
TCCGCGATCAGGTTGGATTCACCGATGTAGCCACCGAAACATGCCACCGA
GGCGAAGGGATCTGTCTGCGTGACCCGTGAATTAAGGAACAGACGCGTGA
GGCCATCCTGGGTGGGCAGACCCACGTATGGAGGCAATGGTCGGCTGATA
CCCTCCGCAGGAGACAAAACCAATAAACCGATCATGGCCAGCGAGGCCAG
GATTTTTCCGGACCACATCTCGGGACACATGTCGACTGATAACT
BO15969.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16762-PA | 765 | CG16762-RA | 1..762 | 780..19 | 3735 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16762-RA | 885 | CG16762-RA | 21..782 | 780..19 | 3765 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2475180..2475594 | 366..780 | 2030 | 99.3 | Plus |
3L | 28110227 | 3L | 2474770..2475118 | 19..367 | 1745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:04:11 has no hits.
BO15969.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:12 Download gff for
BO15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-PA | 1..765 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:08 Download gff for
BO15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-PA | 1..765 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:33:08 Download gff for
BO15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-RA | 13..785 | 15..791 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:29 Download gff for
BO15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-RA | 13..785 | 15..791 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:29 Download gff for
BO15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2474767..2475117 | 15..366 | 99 | <- | Plus |
3L | 2475181..2475602 | 367..791 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:33:08 Download gff for
BO15969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2474767..2475117 | 15..366 | 99 | <- | Plus |
arm_3L | 2475181..2475602 | 367..791 | 98 | | Plus |
BO15969.5prime Sequence
794 bp (794 high quality bases) assembled on 2006-06-02
> BO15969.5prime
GAAGTTATCAGTCGACATGTGTCCCGAGATGTCGTCCGTGAAAATCCTGG
CCTCGCTGGCCATGATCGGTTTATTGGTTTTGTCTCCTGCGGAGGGTATC
AGCCGACCATTGCCTCCATACGTGGGTCTGCCCACCCAGGATGGCCTCAC
GCGTCTGTTCCTTAATTCACGGGTCACGCAGACAGATCCCTTCGCCTCGG
TGGCATGTTTCGGTGGCTACATCGGTGAATCCAACCTGATCGCGGAGCTG
TACAGTGCCAACTACACCAAATGCTACAATGCGGCGGCGGACTCCAGGAA
GGGTATCGATGCCGACTTCCTGGCCACTCGCCGGACTATCCGACTTTCAT
CCGAAAGAGTTTGCAGCGAGCTCAGGGCTTGCAACGAGCTCAACACAACC
CTCGAATCCTTTCAATGTCATGCCAATGTGGGCTCCAACAACACTGTCTC
CACATACAGCATCTCGGGTAACGCCTCGGAGTCGGCCAGCGTGCTGGAGG
AACGCTACCGAGTGGTAGATCTGCGCCATGGGCAGTGCTGCCAGAGGGCG
GAGCGGCACTACGTGGAGTCCACTGCCAGGAACTACAACTACCTGCAGGC
CTGTCTGGATGGTCGCGCTAAGCCGAAGCCCATGCCCAAGCCCACATCCA
CGACCTCCACATCGACCACCACCACCACCACTACCACGACCACCGAGGCA
CCCACCGAACCACCAACCACCACCGAGGCACCTTTAAACGTCGAAGATCA
GTTCAAGCAGCTTTTGAATTTGTTAAACGCAAGCTTTCTAGACC
BO15969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16762-PA | 765 | CG16762-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16762-RA | 885 | CG16762-RA | 21..782 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2475180..2475594 | 431..17 | 2075 | 100 | Minus |
3L | 28110227 | 3L | 2474770..2475118 | 778..430 | 1745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:45:51 has no hits.
BO15969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:13 Download gff for
BO15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-PA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:10 Download gff for
BO15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-PA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:12 Download gff for
BO15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-RA | 13..785 | 6..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:16 Download gff for
BO15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-RA | 13..785 | 6..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:16 Download gff for
BO15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2474767..2475117 | 431..782 | 99 | <- | Minus |
3L | 2475181..2475602 | 6..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:12 Download gff for
BO15969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2474767..2475117 | 431..782 | 99 | <- | Minus |
arm_3L | 2475181..2475602 | 6..430 | 99 | | Minus |
BO15969.complete Sequence
796 bp (796 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633645
> BO15969.complete
GAAGTTATCAGTCGACATGTGTCCCGAGATGTCGTCCGTGAAAATCCTGG
CCTCGCTGGCCATGATCGGTTTATTGGTTTTGTCTCCTGCGGAGGGTATC
AGCCGACCATTGCCTCCATACGTGGGTCTGCCCACCCAGGATGGCCTCAC
GCGTCTGTTCCTTAATTCACGGGTCACGCAGACAGATCCCTTCGCCTCGG
TGGCATGTTTCGGTGGCTACATCGGTGAATCCAACCTGATCGCGGAGCTG
TACAGTGCCAACTACACCAAATGCTACAATGCGGCGGCGGACTCCAGGAA
GGGTATCGATGCCGACTTCCTGGCCACTCGCCGGACTATCCGACTTTCAT
CCGAAAGAGTTTGCAGCGAGCTCAGGGCTTGCAACGAGCTCAACACAACC
CTCGAATCCTTTCAATGTCATGCCAATGTGGGCTCCAACAACACTGTCTC
CACATACAGCATCTCGGGTAACGCCTCGGAGTCGGCCAGCGTGCTGGAGG
AACGCTACCGAGTGGTAGATCTGCGCCATGGGCAGTGCTGCCAGAGGGCG
GAGCGGCACTACGTGGAGTCCACTGCCAGGAACTACAACTACCTGCAGGC
CTGTCTGGATGGTCGCGCTAAGCCGAAGCCCATGCCCAAGCCCACATCCA
CGACCTCCACATCGACCACCACCACCACCACTACCACGACCACCGAGGCA
CCCACCGAACCACCAACCACCACCGAGGCACCTTTAAACGTCGAAGATCA
GTTCAAGCAGCTTTTGAATTTGTTAAACGCAAGCTTTCTAGACCAT
BO15969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16762-RA | 765 | CG16762-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16762-RA | 885 | CG16762-RA | 21..782 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2475180..2475594 | 431..17 | 2075 | 100 | Minus |
3L | 28110227 | 3L | 2474770..2475118 | 778..430 | 1745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:48:56 has no hits.
BO15969.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:42 Download gff for
BO15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-RA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:16 Download gff for
BO15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-RA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:53 Download gff for
BO15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-RA | 21..782 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:43 Download gff for
BO15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-RA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:37 Download gff for
BO15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16762-RA | 21..782 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:37 Download gff for
BO15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2474768..2475117 | 431..780 | 99 | <- | Minus |
3L | 2475181..2475594 | 17..430 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:53 Download gff for
BO15969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2474768..2475117 | 431..780 | 99 | <- | Minus |
arm_3L | 2475181..2475594 | 17..430 | 100 | | Minus |
BO15969.pep Sequence
Translation from 16 to 796
> BO15969.pep
MCPEMSSVKILASLAMIGLLVLSPAEGISRPLPPYVGLPTQDGLTRLFLN
SRVTQTDPFASVACFGGYIGESNLIAELYSANYTKCYNAAADSRKGIDAD
FLATRRTIRLSSERVCSELRACNELNTTLESFQCHANVGSNNTVSTYSIS
GNASESASVLEERYRVVDLRHGQCCQRAERHYVESTARNYNYLQACLDGR
AKPKPMPKPTSTTSTSTTTTTTTTTTEAPTEPPTTTEAPLNVEDQFKQLL
NLLNASFLDH
BO15969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16762-PA | 254 | CG16762-PA | 1..254 | 1..254 | 1312 | 100 | Plus |
CG10911-PA | 359 | CG10911-PA | 3..221 | 8..238 | 252 | 29.7 | Plus |
CG5767-PA | 253 | CG5767-PA | 1..236 | 8..239 | 229 | 26.7 | Plus |
CG5770-PA | 213 | CG5770-PA | 25..206 | 41..227 | 204 | 26.7 | Plus |
CG11470-PB | 230 | CG11470-PB | 8..227 | 19..229 | 203 | 27.3 | Plus |