Clone Sequence Records
BO15972.3prime Sequence
686 bp (686 high quality bases) assembled on 2006-06-02
> BO15972.3prime
ATGGTCTAGAAAGCTTGCACCGAAGTGGTGGGAAAGTCCCAGGCCAGCAC
CAAAGTTTGGCTTCTGGTTGGCAAACGGACCACTCGTCCACTTGCTCGCC
GATCCCGTGAGGTCCAAGGTAGTAGCACGATTGGGCGATGACCAGAGATT
AGCACGTCCGTCCAGGCCGAGTTGCTGGCCGATTCCTGGGAAGTTGCTGT
GCGTCAAGGATCCACCATGTCCGTTGATGTGGGAGTAATCCAGACCAGCT
CCATTGCGCTGGAACTCGAAGCCATTGGCCAGTTTATTTTGTGAAGCAAA
GACCTTGGCATCCAGATTGTGTCTGCCATTGTTGAATAAATTGGCATGGG
CCTCCTGCTGGAAGACATCCTTCACTCCGGGCGTGTGTGTTTTGGTCAAA
GAGGCACCATGACCAGCATTGTTGTAGGCCAAAGTTCCGCCAGTTGTGAC
TGGACCGCTTTGAGTGTTTCCGGCGGCGAAAACCTGACCTACCACATTAT
GGTTGGGATTGCCAATGCCCTTGCTGAGATTCAACCGAGCATCAGCCCCT
CCAGCGGGATTGGAGGCTAAGGAACCTCCAAGCACCTGGCGACGGACCCG
AATGGGTCCTGTTGTGGGAACTGCCTCTGCGATGGCGAAAAGTGCCAAGA
TAAGGATGCTTGTCTTCTGCATGTCGACTGATAACT
BO15972.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18372-PA | 657 | AttB-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
CG10146-PA | 666 | AttA-RA | 55..644 | 627..38 | 2425 | 96.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-RB | 879 | CG18372-RB | 31..686 | 674..19 | 3280 | 100 | Minus |
AttB-RA | 788 | CG18372-RA | 31..686 | 674..19 | 3280 | 100 | Minus |
AttA-RA | 790 | CG10146-RA | 64..691 | 647..20 | 2705 | 95.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14749573..14749972 | 418..19 | 2000 | 100 | Minus |
2R | 25286936 | 2R | 14747718..14748116 | 418..20 | 1785 | 96.5 | Minus |
2R | 25286936 | 2R | 14749253..14749508 | 674..419 | 1280 | 100 | Minus |
2R | 25286936 | 2R | 14747425..14747653 | 647..419 | 920 | 93.4 | Minus |
2R | 25286936 | 2R | 13394170..13394369 | 398..199 | 355 | 78.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:11:04 has no hits.
BO15972.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:18 Download gff for
BO15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-PA | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:19 Download gff for
BO15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18372-PA | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:49:25 Download gff for
BO15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 22..694 | 11..686 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:37 Download gff for
BO15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 22..694 | 11..686 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:37 Download gff for
BO15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14749573..14749980 | 11..418 | 99 | | Minus |
2R | 14749244..14749508 | 419..686 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:49:25 Download gff for
BO15972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10636749..10637013 | 419..686 | 98 | -> | Minus |
arm_2R | 10637078..10637485 | 11..418 | 99 | | Minus |
BO15972.5prime Sequence
686 bp (686 high quality bases) assembled on 2006-06-02
> BO15972.5prime
GAAGTTATCAGTCGACATGCAGAAGACAAGCATCCTTATCTTGGCACTTT
TCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCGTCGC
CAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTGATGC
TCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTGGTAG
GTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAACTGGC
GGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCAAAAC
ACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCCAATT
TATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTCACAA
AATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTCTGGA
TTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAACTTCC
CAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTGGTCA
TCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCAAGTG
GACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGCCTGG
GACTTTCCCACCACTTCGGTGCAAGCTTTCTAGACC
BO15972.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18372-PA | 657 | AttB-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
CG10146-PA | 666 | AttA-RA | 55..644 | 62..651 | 2425 | 96.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-RB | 879 | CG18372-RB | 31..686 | 15..670 | 3280 | 100 | Plus |
AttB-RA | 788 | CG18372-RA | 31..686 | 15..670 | 3280 | 100 | Plus |
AttA-RA | 790 | CG10146-RA | 64..691 | 42..669 | 2705 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14749573..14749972 | 271..670 | 2000 | 100 | Plus |
2R | 25286936 | 2R | 14747718..14748116 | 271..669 | 1785 | 96.5 | Plus |
2R | 25286936 | 2R | 14749253..14749508 | 15..270 | 1280 | 100 | Plus |
2R | 25286936 | 2R | 14747425..14747653 | 42..270 | 920 | 93.4 | Plus |
2R | 25286936 | 2R | 13394170..13394369 | 291..490 | 355 | 78.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 07:36:24 has no hits.
BO15972.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:19 Download gff for
BO15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-PA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:21 Download gff for
BO15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18372-PA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:11 Download gff for
BO15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 22..694 | 3..678 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:44 Download gff for
BO15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 22..694 | 3..678 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:44 Download gff for
BO15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14749244..14749508 | 3..270 | 98 | -> | Plus |
2R | 14749573..14749980 | 271..678 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:11 Download gff for
BO15972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10636749..10637013 | 3..270 | 98 | -> | Plus |
arm_2R | 10637078..10637485 | 271..678 | 99 | | Plus |
BO15972.complete Sequence
688 bp (688 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633646
> BO15972.complete
GAAGTTATCAGTCGACATGCAGAAGACAAGCATCCTTATCTTGGCACTTT
TCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCGTCGC
CAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTGATGC
TCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTGGTAG
GTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAACTGGC
GGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCAAAAC
ACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCCAATT
TATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTCACAA
AATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTCTGGA
TTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAACTTCC
CAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTGGTCA
TCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCAAGTG
GACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGCCTGG
GACTTTCCCACCACTTCGGTGCAAGCTTTCTAGACCAT
BO15972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-RB | 657 | CG18372-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
AttB-RA | 657 | CG18372-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
AttA-RA | 666 | CG10146-PA | 35..662 | 42..669 | 2705 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-RB | 879 | CG18372-RB | 31..686 | 15..670 | 3280 | 100 | Plus |
AttB-RA | 788 | CG18372-RA | 31..686 | 15..670 | 3280 | 100 | Plus |
AttA-RA | 790 | CG10146-RA | 64..691 | 42..669 | 2705 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14749573..14749972 | 271..670 | 2000 | 100 | Plus |
2R | 25286936 | 2R | 14747718..14748116 | 271..669 | 1785 | 96.5 | Plus |
2R | 25286936 | 2R | 14749253..14749508 | 15..270 | 1280 | 100 | Plus |
2R | 25286936 | 2R | 14747425..14747653 | 42..270 | 920 | 93.4 | Plus |
2R | 25286936 | 2R | 13394170..13394369 | 291..490 | 355 | 78.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:58:42 has no hits.
BO15972.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:44 Download gff for
BO15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:18 Download gff for
BO15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 22..694 | 3..678 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:54 Download gff for
BO15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 33..686 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:44 Download gff for
BO15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 22..694 | 3..678 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:13 Download gff for
BO15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 33..686 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:13 Download gff for
BO15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14749255..14749508 | 17..270 | 100 | -> | Plus |
2R | 14749573..14749972 | 271..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:54 Download gff for
BO15972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10636760..10637013 | 17..270 | 100 | -> | Plus |
arm_2R | 10637078..10637477 | 271..672 | 99 | | Plus |
BO15972.pep Sequence
Translation from 16 to 688
> BO15972.pep
MQKTSILILALFAIAEAVPTTGPIRVRRQVLGGSLASNPAGGADARLNLS
KGIGNPNHNVVGQVFAAGNTQSGPVTTGGTLAYNNAGHGASLTKTHTPGV
KDVFQQEAHANLFNNGRHNLDAKVFASQNKLANGFEFQRNGAGLDYSHIN
GHGGSLTHSNFPGIGQQLGLDGRANLWSSPNRATTLDLTGSASKWTSGPF
ANQKPNFGAGLGLSHHFGASFLDH
BO15972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-PB | 218 | CG18372-PB | 1..218 | 1..218 | 1148 | 100 | Plus |
AttB-PA | 218 | CG18372-PA | 1..218 | 1..218 | 1148 | 100 | Plus |
AttA-PA | 221 | CG10146-PA | 1..221 | 1..218 | 1101 | 95 | Plus |
AttC-PB | 241 | CG4740-PB | 37..241 | 19..218 | 739 | 69.9 | Plus |
AttD-PA | 181 | CG7629-PA | 6..181 | 36..217 | 194 | 32.8 | Plus |