Clone BO15972 Report

Search the DGRC for BO15972

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptAttB-RA
Protein status:BO15972.pep: validated full length
Sequenced Size:688

Clone Sequence Records

BO15972.3prime Sequence

686 bp (686 high quality bases) assembled on 2006-06-02

> BO15972.3prime
ATGGTCTAGAAAGCTTGCACCGAAGTGGTGGGAAAGTCCCAGGCCAGCAC
CAAAGTTTGGCTTCTGGTTGGCAAACGGACCACTCGTCCACTTGCTCGCC
GATCCCGTGAGGTCCAAGGTAGTAGCACGATTGGGCGATGACCAGAGATT
AGCACGTCCGTCCAGGCCGAGTTGCTGGCCGATTCCTGGGAAGTTGCTGT
GCGTCAAGGATCCACCATGTCCGTTGATGTGGGAGTAATCCAGACCAGCT
CCATTGCGCTGGAACTCGAAGCCATTGGCCAGTTTATTTTGTGAAGCAAA
GACCTTGGCATCCAGATTGTGTCTGCCATTGTTGAATAAATTGGCATGGG
CCTCCTGCTGGAAGACATCCTTCACTCCGGGCGTGTGTGTTTTGGTCAAA
GAGGCACCATGACCAGCATTGTTGTAGGCCAAAGTTCCGCCAGTTGTGAC
TGGACCGCTTTGAGTGTTTCCGGCGGCGAAAACCTGACCTACCACATTAT
GGTTGGGATTGCCAATGCCCTTGCTGAGATTCAACCGAGCATCAGCCCCT
CCAGCGGGATTGGAGGCTAAGGAACCTCCAAGCACCTGGCGACGGACCCG
AATGGGTCCTGTTGTGGGAACTGCCTCTGCGATGGCGAAAAGTGCCAAGA
TAAGGATGCTTGTCTTCTGCATGTCGACTGATAACT

BO15972.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18372-PA 657 AttB-RA 1..654 672..19 3270 100 Minus
CG10146-PA 666 AttA-RA 55..644 627..38 2425 96.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-RB 879 CG18372-RB 31..686 674..19 3280 100 Minus
AttB-RA 788 CG18372-RA 31..686 674..19 3280 100 Minus
AttA-RA 790 CG10146-RA 64..691 647..20 2705 95.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14749573..14749972 418..19 2000 100 Minus
2R 25286936 2R 14747718..14748116 418..20 1785 96.5 Minus
2R 25286936 2R 14749253..14749508 674..419 1280 100 Minus
2R 25286936 2R 14747425..14747653 647..419 920 93.4 Minus
2R 25286936 2R 13394170..13394369 398..199 355 78.5 Minus
Blast to na_te.dros performed on 2015-02-12 18:11:04 has no hits.

BO15972.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:18 Download gff for BO15972.3prime
Subject Subject Range Query Range Percent Splice Strand
AttB-PA 1..657 15..672 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:19 Download gff for BO15972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18372-PA 1..657 15..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:49:25 Download gff for BO15972.3prime
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 22..694 11..686 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:37 Download gff for BO15972.3prime
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 22..694 11..686 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:37 Download gff for BO15972.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14749573..14749980 11..418 99   Minus
2R 14749244..14749508 419..686 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:49:25 Download gff for BO15972.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10636749..10637013 419..686 98 -> Minus
arm_2R 10637078..10637485 11..418 99   Minus

BO15972.5prime Sequence

686 bp (686 high quality bases) assembled on 2006-06-02

> BO15972.5prime
GAAGTTATCAGTCGACATGCAGAAGACAAGCATCCTTATCTTGGCACTTT
TCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCGTCGC
CAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTGATGC
TCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTGGTAG
GTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAACTGGC
GGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCAAAAC
ACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCCAATT
TATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTCACAA
AATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTCTGGA
TTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAACTTCC
CAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTGGTCA
TCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCAAGTG
GACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGCCTGG
GACTTTCCCACCACTTCGGTGCAAGCTTTCTAGACC

BO15972.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18372-PA 657 AttB-RA 1..654 17..670 3270 100 Plus
CG10146-PA 666 AttA-RA 55..644 62..651 2425 96.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-RB 879 CG18372-RB 31..686 15..670 3280 100 Plus
AttB-RA 788 CG18372-RA 31..686 15..670 3280 100 Plus
AttA-RA 790 CG10146-RA 64..691 42..669 2705 95.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14749573..14749972 271..670 2000 100 Plus
2R 25286936 2R 14747718..14748116 271..669 1785 96.5 Plus
2R 25286936 2R 14749253..14749508 15..270 1280 100 Plus
2R 25286936 2R 14747425..14747653 42..270 920 93.4 Plus
2R 25286936 2R 13394170..13394369 291..490 355 78.5 Plus
Blast to na_te.dros performed on 2015-02-02 07:36:24 has no hits.

BO15972.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:19 Download gff for BO15972.5prime
Subject Subject Range Query Range Percent Splice Strand
AttB-PA 1..657 17..674 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:21 Download gff for BO15972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18372-PA 1..657 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:11 Download gff for BO15972.5prime
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 22..694 3..678 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:44 Download gff for BO15972.5prime
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 22..694 3..678 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:44 Download gff for BO15972.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14749244..14749508 3..270 98 -> Plus
2R 14749573..14749980 271..678 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:11 Download gff for BO15972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10636749..10637013 3..270 98 -> Plus
arm_2R 10637078..10637485 271..678 99   Plus

BO15972.complete Sequence

688 bp (688 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633646

> BO15972.complete
GAAGTTATCAGTCGACATGCAGAAGACAAGCATCCTTATCTTGGCACTTT
TCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCGTCGC
CAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTGATGC
TCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTGGTAG
GTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAACTGGC
GGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCAAAAC
ACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCCAATT
TATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTCACAA
AATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTCTGGA
TTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAACTTCC
CAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTGGTCA
TCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCAAGTG
GACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGCCTGG
GACTTTCCCACCACTTCGGTGCAAGCTTTCTAGACCAT

BO15972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-RB 657 CG18372-PB 1..654 17..670 3270 100 Plus
AttB-RA 657 CG18372-PA 1..654 17..670 3270 100 Plus
AttA-RA 666 CG10146-PA 35..662 42..669 2705 95.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-RB 879 CG18372-RB 31..686 15..670 3280 100 Plus
AttB-RA 788 CG18372-RA 31..686 15..670 3280 100 Plus
AttA-RA 790 CG10146-RA 64..691 42..669 2705 95.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14749573..14749972 271..670 2000 100 Plus
2R 25286936 2R 14747718..14748116 271..669 1785 96.5 Plus
2R 25286936 2R 14749253..14749508 15..270 1280 100 Plus
2R 25286936 2R 14747425..14747653 42..270 920 93.4 Plus
2R 25286936 2R 13394170..13394369 291..490 355 78.5 Plus
Blast to na_te.dros performed on 2014-11-27 20:58:42 has no hits.

BO15972.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:44 Download gff for BO15972.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 1..657 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:18 Download gff for BO15972.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 22..694 3..678 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:54 Download gff for BO15972.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 33..686 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:44 Download gff for BO15972.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 22..694 3..678 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:13 Download gff for BO15972.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 33..686 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:13 Download gff for BO15972.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14749255..14749508 17..270 100 -> Plus
2R 14749573..14749972 271..672 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:54 Download gff for BO15972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10636760..10637013 17..270 100 -> Plus
arm_2R 10637078..10637477 271..672 99   Plus

BO15972.pep Sequence

Translation from 16 to 688

> BO15972.pep
MQKTSILILALFAIAEAVPTTGPIRVRRQVLGGSLASNPAGGADARLNLS
KGIGNPNHNVVGQVFAAGNTQSGPVTTGGTLAYNNAGHGASLTKTHTPGV
KDVFQQEAHANLFNNGRHNLDAKVFASQNKLANGFEFQRNGAGLDYSHIN
GHGGSLTHSNFPGIGQQLGLDGRANLWSSPNRATTLDLTGSASKWTSGPF
ANQKPNFGAGLGLSHHFGASFLDH

BO15972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-PB 218 CG18372-PB 1..218 1..218 1148 100 Plus
AttB-PA 218 CG18372-PA 1..218 1..218 1148 100 Plus
AttA-PA 221 CG10146-PA 1..221 1..218 1101 95 Plus
AttC-PB 241 CG4740-PB 37..241 19..218 739 69.9 Plus
AttD-PA 181 CG7629-PA 6..181 36..217 194 32.8 Plus