Clone BO15974 Report

Search the DGRC for BO15974

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptSyx8-RA
Protein status:BO15974.pep: validated full length
Sequenced Size:730

Clone Sequence Records

BO15974.3prime Sequence

728 bp (700 high quality bases) assembled on 2006-06-02

> BO15974.3prime
ATGGTCTAGAAAGCTTGCGACGAAGACCACGACAATGATGGCGACGAACA
AGGCTATGATGACGAGCCAGTAGCCCCAGGTACTGTCCCGCCGGTTAACC
TGTCCAATGCTCTGTGTTTCCCGCTGCACACCCGTTTCCACACGGTCCAT
GGCATTGGCCAAGTTGTCAAGGATATTGTTCTGGTCCTCCACCTCGTTGC
CCAGCTGTGTGGCCAGTTGGCGCTGTCTGGACAATGTGGCTGATAGAACC
TCGAGTCCTTCGTTCTGCTGCGCCAGCATCTCGGTCTTTTTCTGCTTCAG
AGCCTCCACATCCAAGGCGGTATTCCGCGAGGAATTGCTGTGACCTGGGC
CGAGATCCTGATCCTGCCAAGCAGAACCGGATGCGGCCGGGACATTGGAG
CGGCTACTGTTTGCGAACTTCTCGCGGATCTCGCGCAGCTGCGAAGTAAG
TCTATCCCAGTCGATGCGCCGCTGTTGCAGCTCCTCCTCCGGGCTCGTCT
CCCAGGTGATGGCGTTGTCCAGCACCACCTTGAGGTGCTTCATGTCCTTG
GCCAGCTGCTCTATTCCCGTCTGAATGCTGCTTGTCAGTTGGACGAACTG
GCTCGTCCTCGGATTGAGCTGCTGCCGCTGGTTGAGGTATACCAGCAGCT
GATGCCGCAGTCGCTCGCAGCCCTCGTACTCGATGTCCCAGGAATCGTGA
TCCACCAGCGCCATGTCGACTGATAACT

BO15974.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4109-PA 699 Syx8-RA 1..696 714..19 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-RA 897 CG4109-RA 80..775 714..19 3480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16586441..16586978 177..714 2690 100 Plus
3L 28110227 3L 16586230..16586387 19..176 790 100 Plus
Blast to na_te.dros performed 2015-02-08 12:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
BS4 754 BS4 BS4 754bp 91..126 544..582 107 79.5 Plus

BO15974.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:22 Download gff for BO15974.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-PA 1..699 18..714 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:22 Download gff for BO15974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4109-PA 1..699 18..714 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:03 Download gff for BO15974.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 73..780 12..722 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:50:05 Download gff for BO15974.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 73..780 12..722 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:50:05 Download gff for BO15974.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16586225..16586387 12..176 98 <- Plus
3L 16586441..16586985 177..722 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:03 Download gff for BO15974.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16579325..16579487 12..176 98 <- Plus
arm_3L 16579541..16580085 177..722 99   Plus

BO15974.5prime Sequence

728 bp (728 high quality bases) assembled on 2006-06-02

> BO15974.5prime
GAAGTTATCAGTCGACATGGCGCTGGTGGATCACGATTCCTGGGACATCG
AGTACGAGGGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAAC
CAGCGGCAGCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAG
CAGCATTCAGACGGGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCA
AGGTGGTGCTGGACAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAG
CTGCAACAGCGGCGCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGA
GATCCGCGAGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCAT
CCGGTTCTGCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCC
TCGCGGAATACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGA
GATGCTGGCGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGT
CCAGACAGCGCCAACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAG
AACAATATCCTTGACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGG
TGTGCAGCGGGAAACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTA
CCTGGGGCTACTGGCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTC
GTGGTCTTCGTCGCAAGCTTTCTAGACC

BO15974.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4109-PA 699 Syx8-RA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-RA 897 CG4109-RA 80..775 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16586441..16586978 554..17 2690 100 Minus
3L 28110227 3L 16586230..16586387 712..555 790 100 Minus
Blast to na_te.dros performed 2015-02-04 01:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
BS4 754 BS4 BS4 754bp 91..126 187..149 107 79.5 Minus

BO15974.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:22 Download gff for BO15974.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-PA 1..699 17..713 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:24 Download gff for BO15974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4109-PA 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:30 Download gff for BO15974.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 73..780 9..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:57 Download gff for BO15974.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 73..780 9..719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:57 Download gff for BO15974.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16586225..16586387 555..719 98 <- Minus
3L 16586441..16586985 9..554 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:30 Download gff for BO15974.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16579325..16579487 555..719 98 <- Minus
arm_3L 16579541..16580085 9..554 99   Minus

BO15974.complete Sequence

730 bp (730 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633647

> BO15974.complete
GAAGTTATCAGTCGACATGGCGCTGGTGGATCACGATTCCTGGGACATCG
AGTACGAGGGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAAC
CAGCGGCAGCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAG
CAGCATTCAGACGGGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCA
AGGTGGTGCTGGACAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAG
CTGCAACAGCGGCGCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGA
GATCCGCGAGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCAT
CCGGTTCTGCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCC
TCGCGGAATACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGA
GATGCTGGCGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGT
CCAGACAGCGCCAACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAG
AACAATATCCTTGACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGG
TGTGCAGCGGGAAACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTA
CCTGGGGCTACTGGCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTC
GTGGTCTTCGTCGCAAGCTTTCTAGACCAT

BO15974.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-RA 699 CG4109-PA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-RA 897 CG4109-RA 80..775 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16586441..16586978 554..17 2690 100 Minus
3L 28110227 3L 16586230..16586387 712..555 790 100 Minus
Blast to na_te.dros performed 2014-11-27 11:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
BS4 754 BS4 BS4 754bp 91..126 187..149 107 79.5 Minus

BO15974.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:45 Download gff for BO15974.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:19 Download gff for BO15974.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 115..820 9..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:06:59 Download gff for BO15974.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 80..775 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:45 Download gff for BO15974.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 115..820 9..713 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:31 Download gff for BO15974.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 80..775 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:31 Download gff for BO15974.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16586226..16586387 555..714 98 <- Minus
3L 16586441..16586978 17..554 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:06:59 Download gff for BO15974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16579326..16579487 555..714 98 <- Minus
arm_3L 16579541..16580078 17..554 100   Minus

BO15974.pep Sequence

Translation from 16 to 730

> BO15974.pep
MALVDHDSWDIEYEGCERLRHQLLVYLNQRQQLNPRTSQFVQLTSSIQTG
IEQLAKDMKHLKVVLDNAITWETSPEEELQQRRIDWDRLTSQLREIREKF
ANSSRSNVPAASGSAWQDQDLGPGHSNSSRNTALDVEALKQKKTEMLAQQ
NEGLEVLSATLSRQRQLATQLGNEVEDQNNILDNLANAMDRVETGVQRET
QSIGQVNRRDSTWGYWLVIIALFVAIIVVVFVASFLDH

BO15974.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-PA 232 CG4109-PA 1..232 1..232 1178 100 Plus