Clone Sequence Records
BO15974.3prime Sequence
728 bp (700 high quality bases) assembled on 2006-06-02
> BO15974.3prime
ATGGTCTAGAAAGCTTGCGACGAAGACCACGACAATGATGGCGACGAACA
AGGCTATGATGACGAGCCAGTAGCCCCAGGTACTGTCCCGCCGGTTAACC
TGTCCAATGCTCTGTGTTTCCCGCTGCACACCCGTTTCCACACGGTCCAT
GGCATTGGCCAAGTTGTCAAGGATATTGTTCTGGTCCTCCACCTCGTTGC
CCAGCTGTGTGGCCAGTTGGCGCTGTCTGGACAATGTGGCTGATAGAACC
TCGAGTCCTTCGTTCTGCTGCGCCAGCATCTCGGTCTTTTTCTGCTTCAG
AGCCTCCACATCCAAGGCGGTATTCCGCGAGGAATTGCTGTGACCTGGGC
CGAGATCCTGATCCTGCCAAGCAGAACCGGATGCGGCCGGGACATTGGAG
CGGCTACTGTTTGCGAACTTCTCGCGGATCTCGCGCAGCTGCGAAGTAAG
TCTATCCCAGTCGATGCGCCGCTGTTGCAGCTCCTCCTCCGGGCTCGTCT
CCCAGGTGATGGCGTTGTCCAGCACCACCTTGAGGTGCTTCATGTCCTTG
GCCAGCTGCTCTATTCCCGTCTGAATGCTGCTTGTCAGTTGGACGAACTG
GCTCGTCCTCGGATTGAGCTGCTGCCGCTGGTTGAGGTATACCAGCAGCT
GATGCCGCAGTCGCTCGCAGCCCTCGTACTCGATGTCCCAGGAATCGTGA
TCCACCAGCGCCATGTCGACTGATAACT
BO15974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4109-PA | 699 | Syx8-RA | 1..696 | 714..19 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-RA | 897 | CG4109-RA | 80..775 | 714..19 | 3480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16586441..16586978 | 177..714 | 2690 | 100 | Plus |
3L | 28110227 | 3L | 16586230..16586387 | 19..176 | 790 | 100 | Plus |
Blast to na_te.dros performed 2015-02-08 12:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS4 | 754 | BS4 BS4 754bp | 91..126 | 544..582 | 107 | 79.5 | Plus |
BO15974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:22 Download gff for
BO15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:22 Download gff for
BO15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4109-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:03 Download gff for
BO15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 73..780 | 12..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:50:05 Download gff for
BO15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 73..780 | 12..722 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:50:05 Download gff for
BO15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16586225..16586387 | 12..176 | 98 | <- | Plus |
3L | 16586441..16586985 | 177..722 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:03 Download gff for
BO15974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16579325..16579487 | 12..176 | 98 | <- | Plus |
arm_3L | 16579541..16580085 | 177..722 | 99 | | Plus |
BO15974.5prime Sequence
728 bp (728 high quality bases) assembled on 2006-06-02
> BO15974.5prime
GAAGTTATCAGTCGACATGGCGCTGGTGGATCACGATTCCTGGGACATCG
AGTACGAGGGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAAC
CAGCGGCAGCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAG
CAGCATTCAGACGGGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCA
AGGTGGTGCTGGACAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAG
CTGCAACAGCGGCGCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGA
GATCCGCGAGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCAT
CCGGTTCTGCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCC
TCGCGGAATACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGA
GATGCTGGCGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGT
CCAGACAGCGCCAACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAG
AACAATATCCTTGACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGG
TGTGCAGCGGGAAACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTA
CCTGGGGCTACTGGCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTC
GTGGTCTTCGTCGCAAGCTTTCTAGACC
BO15974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4109-PA | 699 | Syx8-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-RA | 897 | CG4109-RA | 80..775 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16586441..16586978 | 554..17 | 2690 | 100 | Minus |
3L | 28110227 | 3L | 16586230..16586387 | 712..555 | 790 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 01:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS4 | 754 | BS4 BS4 754bp | 91..126 | 187..149 | 107 | 79.5 | Minus |
BO15974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:22 Download gff for
BO15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:24 Download gff for
BO15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4109-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:30 Download gff for
BO15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 73..780 | 9..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:57 Download gff for
BO15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 73..780 | 9..719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:57 Download gff for
BO15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16586225..16586387 | 555..719 | 98 | <- | Minus |
3L | 16586441..16586985 | 9..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:30 Download gff for
BO15974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16579325..16579487 | 555..719 | 98 | <- | Minus |
arm_3L | 16579541..16580085 | 9..554 | 99 | | Minus |
BO15974.complete Sequence
730 bp (730 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633647
> BO15974.complete
GAAGTTATCAGTCGACATGGCGCTGGTGGATCACGATTCCTGGGACATCG
AGTACGAGGGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAAC
CAGCGGCAGCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAG
CAGCATTCAGACGGGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCA
AGGTGGTGCTGGACAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAG
CTGCAACAGCGGCGCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGA
GATCCGCGAGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCAT
CCGGTTCTGCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCC
TCGCGGAATACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGA
GATGCTGGCGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGT
CCAGACAGCGCCAACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAG
AACAATATCCTTGACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGG
TGTGCAGCGGGAAACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTA
CCTGGGGCTACTGGCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTC
GTGGTCTTCGTCGCAAGCTTTCTAGACCAT
BO15974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-RA | 699 | CG4109-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-RA | 897 | CG4109-RA | 80..775 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16586441..16586978 | 554..17 | 2690 | 100 | Minus |
3L | 28110227 | 3L | 16586230..16586387 | 712..555 | 790 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 11:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS4 | 754 | BS4 BS4 754bp | 91..126 | 187..149 | 107 | 79.5 | Minus |
BO15974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:45 Download gff for
BO15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:19 Download gff for
BO15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 115..820 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:06:59 Download gff for
BO15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 80..775 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:45 Download gff for
BO15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 115..820 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:31 Download gff for
BO15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 80..775 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:31 Download gff for
BO15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16586226..16586387 | 555..714 | 98 | <- | Minus |
3L | 16586441..16586978 | 17..554 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:06:59 Download gff for
BO15974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16579326..16579487 | 555..714 | 98 | <- | Minus |
arm_3L | 16579541..16580078 | 17..554 | 100 | | Minus |
BO15974.pep Sequence
Translation from 16 to 730
> BO15974.pep
MALVDHDSWDIEYEGCERLRHQLLVYLNQRQQLNPRTSQFVQLTSSIQTG
IEQLAKDMKHLKVVLDNAITWETSPEEELQQRRIDWDRLTSQLREIREKF
ANSSRSNVPAASGSAWQDQDLGPGHSNSSRNTALDVEALKQKKTEMLAQQ
NEGLEVLSATLSRQRQLATQLGNEVEDQNNILDNLANAMDRVETGVQRET
QSIGQVNRRDSTWGYWLVIIALFVAIIVVVFVASFLDH
BO15974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-PA | 232 | CG4109-PA | 1..232 | 1..232 | 1178 | 100 | Plus |