Clone BO15978 Report

Search the DGRC for BO15978

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG10688-RA
Protein status:BO15978.pep: validated full length
Sequenced Size:796

Clone Sequence Records

BO15978.3prime Sequence

794 bp (734 high quality bases) assembled on 2006-06-02

> BO15978.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCAGAATCTCGGTGAGAATGCGTTGCG
TATCCTTGGGAGTATATACCCTATGGCTGATGGTTCGAGGATCGCTATAG
ATCTCATAGTCATTGCCGCCCGGCTCCGTTTTATCGCCAAAGAAGTGGAT
TTCCTTGAACTTGTAGTGCGCTTCGATGTGTCGCAGGCAGTAGGTCTTGT
CCCAACCATGCGGGAAGACATCGAAGCTGATCTGACCACCAATCGAGTAC
GTGAGATCCACATCGGCAAACTCCTGCTTCAGGTCCTTGATCATTTTCTC
GCGCACCTTGTGCTCAATGTCGTATTCGGCGAACATGTTGCGCTCCTCCC
GAGTGCACTGCCTGCCAATGGGACATACGTTCATCATGCCATTTCGGAAT
TCGATAAAGGTGCCCCTCTTGATGGGCACATCCAGTTCGGACAGATAGCG
CAGCACAAAGTTAATGAAGCGTTTCACCGTCTCCTCGCCCAAATGCATGA
TGATATTCTGCTTTCCCACCTCCTTTCCGCCCTCAATCTGCACCAGCCCA
TTTTCTGGGAATATGAAGTCGAACTCGTTGAGTATCTTCCTGCCATTCAG
CTGCTCGAACATCTTCTCCAAATCCGAGCCTCCGACGATTCCGATGGTCG
CCCTCGGCTTAACCCGCGAGTAGAAGAACTCCTCGAACTCCGGAGTGACC
ACGGATCTGGGCATCGTTAGCGTGCCGTCCACGTCGAAGAGCAACAGGAT
TTCATCACGCTTTCATGCGGCGGTGGTCATGTCGACTGATAACT

BO15978.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-PA 765 CG10688-RA 1..762 780..19 3510 98.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-RA 924 CG10688-RA 66..827 780..19 3630 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12534655..12535416 780..19 3630 98.4 Minus
Blast to na_te.dros performed 2015-02-10 16:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3938..3977 425..464 110 75 Plus

BO15978.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:27 Download gff for BO15978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-PA 1..765 16..780 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:30 Download gff for BO15978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-PA 1..765 16..780 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:58:08 Download gff for BO15978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..827 19..780 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:20 Download gff for BO15978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..827 19..780 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:20 Download gff for BO15978.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12534655..12535416 19..780 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:58:08 Download gff for BO15978.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12527755..12528516 19..780 98   Minus

BO15978.5prime Sequence

794 bp (747 high quality bases) assembled on 2006-06-02

> BO15978.5prime
GAAGTTATCAGTCGACATGACCACCGCCGCATTGAAGCGTGATGAAATCC
TGCTGCTCTTCGACGTGGACGGCACGCTAACGATGCCCAGATCCGTGGTC
ACTCCGGAGTTCGAGGAGTTCTTCTACTCGCGGGTTAAGCCGAGGGCGAC
CATCGGAATCGTCGGAGGCTCGGATTTGGAGAAGATGTTCGAGCAGCTGA
ATGGCAGGAAGATACTCAACGAGTTCGACTTCATATTCCCAGAAAATGGG
CTGGTGCAGATTGAGGGCGGAAAGGAGGTGGGAAAGCAGAATATCATCAT
GCATTTGGGCGAGGAGACGGTGAAACGCTTCATTAACTTTGTGCTGCGCT
ATCTGTCCGAACTGGATGTGCCCATCAAGAGGGGCACCTTTATCGAATTC
CGAAATGGCATGATGAACGTATGTCCCATTGGCAGGCAGTGCACTCGGGA
GGAGCGCAACATGTTCGCCGAATACGACATTGAGCACAAGGTGCGCGAGA
AAATGATCAAGGACCTGAAGCAGGAGTTTGCCGATGTGGATCTCACGTAC
TCGATTGGTGGTCAGATCAGCTTCGATGTCTTCCCGCATGGTTGGGACAA
GACCTACTGCCTGCGACACATCGAAGCGCACTACAAGTTCAAGGAAATCC
ACTTCTTTGGCGATAAAACGGAGCCGGGCGGCAATGACTATGAGATCTAT
AGCGATCCTCGAACCATCAGCCATAGGGTATATACTCCCAAGGATACGCA
ACGCATTCTCACCGAGATTCTGGAGCTGGCAAGCTTTCTAGACC

BO15978.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-PA 765 CG10688-RA 1..762 17..778 3585 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-RA 924 CG10688-RA 66..827 17..778 3675 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12534655..12535416 17..778 3675 98.8 Plus
Blast to na_te.dros performed 2015-02-04 01:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3938..3977 372..333 110 75 Minus

BO15978.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:28 Download gff for BO15978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-PA 1..765 17..781 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:32 Download gff for BO15978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-PA 1..765 17..781 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:17 Download gff for BO15978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..827 17..778 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:46 Download gff for BO15978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..827 17..778 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:46 Download gff for BO15978.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12534655..12535416 17..778 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:17 Download gff for BO15978.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12527755..12528516 17..778 98   Plus

BO15978.complete Sequence

796 bp (796 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633648

> BO15978.complete
GAAGTTATCAGTCGACATGACCACCGCCGCATTGAAGCGTGATGAAATCC
TGCTGCTCTTCGACGTGGACGGCACGCTAACGATGCCCAGATCCGTGGTC
ACTCCGGAGTTCGAGGAGTTCTTCTACTCGCGGGTTAAGCCGAGGGCGAC
CATCGGAATCGTCGGAGGCTCGGATTTGGAGAAGATGTTCGAGCAGCTGA
ATGGCAGGAAGATACTCAACGAGTTCGACTTCATATTCCCAGAAAATGGG
CTGGTGCAGATTGAGGGCGGAAAGGAGGTGGGAAAGCAGAATATCATCAT
GCATTTGGGCGAGGAGACGGTGAAACGCTTCATTAACTTTGTGCTGCGCT
ATCTGTCCGAACTGGATGTGCCCATCAAGAGGGGCACCTTTATCGAATTC
CGAAATGGCATGATGAACGTATGTCCCATTGGCAGGCAGTGCACTCGGGA
GGAGCGCAACATGTTCGCCGAATACGACATTGAGCACAAGGTGCGCGAGA
AAATGATCAAGGACCTGAAGCAGGAGTTTGCCGATGTGGATCTCACGTAC
TCGATTGGTGGTCAGATCAGCTTCGATGTCTTCCCGCATGGTTGGGACAA
GACCTACTGCCTGCGACACATCGAAGCGCACTACAAGTTCAAGGAAATCC
ACTTCTTTGGCGATAAAACGGAGCCGGGCGGCAATGACTATGAGATCTAT
AGCGATCCTCGAACCATCAGCCATAGGGTATATACTCCCAAGGATACGCA
ACGCATTCTCACCGAGATTCTGGAGCTGGCAAGCTTTCTAGACCAT

BO15978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-RA 765 CG10688-PA 1..762 17..778 3675 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-RA 924 CG10688-RA 66..827 17..778 3675 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12534655..12535416 17..778 3675 98.8 Plus
Blast to na_te.dros performed 2014-11-27 01:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3938..3977 372..333 110 75 Minus

BO15978.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:46 Download gff for BO15978.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 1..765 17..781 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:21 Download gff for BO15978.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..827 17..778 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:23 Download gff for BO15978.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..827 17..780 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:46 Download gff for BO15978.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..827 17..778 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:15 Download gff for BO15978.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..827 17..780 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:15 Download gff for BO15978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12534655..12535416 17..780 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:23 Download gff for BO15978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12527755..12528516 17..780 98   Plus

BO15978.pep Sequence

Translation from 16 to 796

> BO15978.pep
MTTAALKRDEILLLFDVDGTLTMPRSVVTPEFEEFFYSRVKPRATIGIVG
GSDLEKMFEQLNGRKILNEFDFIFPENGLVQIEGGKEVGKQNIIMHLGEE
TVKRFINFVLRYLSELDVPIKRGTFIEFRNGMMNVCPIGRQCTREERNMF
AEYDIEHKVREKMIKDLKQEFADVDLTYSIGGQISFDVFPHGWDKTYCLR
HIEAHYKFKEIHFFGDKTEPGGNDYEIYSDPRTISHRVYTPKDTQRILTE
ILELASFLDH

BO15978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-PA 254 CG10688-PA 1..254 1..254 1340 100 Plus