Clone Sequence Records
BO15978.3prime Sequence
794 bp (734 high quality bases) assembled on 2006-06-02
> BO15978.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCAGAATCTCGGTGAGAATGCGTTGCG
TATCCTTGGGAGTATATACCCTATGGCTGATGGTTCGAGGATCGCTATAG
ATCTCATAGTCATTGCCGCCCGGCTCCGTTTTATCGCCAAAGAAGTGGAT
TTCCTTGAACTTGTAGTGCGCTTCGATGTGTCGCAGGCAGTAGGTCTTGT
CCCAACCATGCGGGAAGACATCGAAGCTGATCTGACCACCAATCGAGTAC
GTGAGATCCACATCGGCAAACTCCTGCTTCAGGTCCTTGATCATTTTCTC
GCGCACCTTGTGCTCAATGTCGTATTCGGCGAACATGTTGCGCTCCTCCC
GAGTGCACTGCCTGCCAATGGGACATACGTTCATCATGCCATTTCGGAAT
TCGATAAAGGTGCCCCTCTTGATGGGCACATCCAGTTCGGACAGATAGCG
CAGCACAAAGTTAATGAAGCGTTTCACCGTCTCCTCGCCCAAATGCATGA
TGATATTCTGCTTTCCCACCTCCTTTCCGCCCTCAATCTGCACCAGCCCA
TTTTCTGGGAATATGAAGTCGAACTCGTTGAGTATCTTCCTGCCATTCAG
CTGCTCGAACATCTTCTCCAAATCCGAGCCTCCGACGATTCCGATGGTCG
CCCTCGGCTTAACCCGCGAGTAGAAGAACTCCTCGAACTCCGGAGTGACC
ACGGATCTGGGCATCGTTAGCGTGCCGTCCACGTCGAAGAGCAACAGGAT
TTCATCACGCTTTCATGCGGCGGTGGTCATGTCGACTGATAACT
BO15978.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10688-PA | 765 | CG10688-RA | 1..762 | 780..19 | 3510 | 98.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10688-RA | 924 | CG10688-RA | 66..827 | 780..19 | 3630 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12534655..12535416 | 780..19 | 3630 | 98.4 | Minus |
Blast to na_te.dros performed 2015-02-10 16:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3938..3977 | 425..464 | 110 | 75 | Plus |
BO15978.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:27 Download gff for
BO15978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-PA | 1..765 | 16..780 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:30 Download gff for
BO15978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-PA | 1..765 | 16..780 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:58:08 Download gff for
BO15978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-RA | 66..827 | 19..780 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:20 Download gff for
BO15978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-RA | 66..827 | 19..780 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:20 Download gff for
BO15978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12534655..12535416 | 19..780 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:58:08 Download gff for
BO15978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12527755..12528516 | 19..780 | 98 | | Minus |
BO15978.5prime Sequence
794 bp (747 high quality bases) assembled on 2006-06-02
> BO15978.5prime
GAAGTTATCAGTCGACATGACCACCGCCGCATTGAAGCGTGATGAAATCC
TGCTGCTCTTCGACGTGGACGGCACGCTAACGATGCCCAGATCCGTGGTC
ACTCCGGAGTTCGAGGAGTTCTTCTACTCGCGGGTTAAGCCGAGGGCGAC
CATCGGAATCGTCGGAGGCTCGGATTTGGAGAAGATGTTCGAGCAGCTGA
ATGGCAGGAAGATACTCAACGAGTTCGACTTCATATTCCCAGAAAATGGG
CTGGTGCAGATTGAGGGCGGAAAGGAGGTGGGAAAGCAGAATATCATCAT
GCATTTGGGCGAGGAGACGGTGAAACGCTTCATTAACTTTGTGCTGCGCT
ATCTGTCCGAACTGGATGTGCCCATCAAGAGGGGCACCTTTATCGAATTC
CGAAATGGCATGATGAACGTATGTCCCATTGGCAGGCAGTGCACTCGGGA
GGAGCGCAACATGTTCGCCGAATACGACATTGAGCACAAGGTGCGCGAGA
AAATGATCAAGGACCTGAAGCAGGAGTTTGCCGATGTGGATCTCACGTAC
TCGATTGGTGGTCAGATCAGCTTCGATGTCTTCCCGCATGGTTGGGACAA
GACCTACTGCCTGCGACACATCGAAGCGCACTACAAGTTCAAGGAAATCC
ACTTCTTTGGCGATAAAACGGAGCCGGGCGGCAATGACTATGAGATCTAT
AGCGATCCTCGAACCATCAGCCATAGGGTATATACTCCCAAGGATACGCA
ACGCATTCTCACCGAGATTCTGGAGCTGGCAAGCTTTCTAGACC
BO15978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10688-PA | 765 | CG10688-RA | 1..762 | 17..778 | 3585 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10688-RA | 924 | CG10688-RA | 66..827 | 17..778 | 3675 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12534655..12535416 | 17..778 | 3675 | 98.8 | Plus |
Blast to na_te.dros performed 2015-02-04 01:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3938..3977 | 372..333 | 110 | 75 | Minus |
BO15978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:28 Download gff for
BO15978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-PA | 1..765 | 17..781 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:32 Download gff for
BO15978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-PA | 1..765 | 17..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:17 Download gff for
BO15978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-RA | 66..827 | 17..778 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:46 Download gff for
BO15978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-RA | 66..827 | 17..778 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:46 Download gff for
BO15978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12534655..12535416 | 17..778 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:17 Download gff for
BO15978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12527755..12528516 | 17..778 | 98 | | Plus |
BO15978.complete Sequence
796 bp (796 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633648
> BO15978.complete
GAAGTTATCAGTCGACATGACCACCGCCGCATTGAAGCGTGATGAAATCC
TGCTGCTCTTCGACGTGGACGGCACGCTAACGATGCCCAGATCCGTGGTC
ACTCCGGAGTTCGAGGAGTTCTTCTACTCGCGGGTTAAGCCGAGGGCGAC
CATCGGAATCGTCGGAGGCTCGGATTTGGAGAAGATGTTCGAGCAGCTGA
ATGGCAGGAAGATACTCAACGAGTTCGACTTCATATTCCCAGAAAATGGG
CTGGTGCAGATTGAGGGCGGAAAGGAGGTGGGAAAGCAGAATATCATCAT
GCATTTGGGCGAGGAGACGGTGAAACGCTTCATTAACTTTGTGCTGCGCT
ATCTGTCCGAACTGGATGTGCCCATCAAGAGGGGCACCTTTATCGAATTC
CGAAATGGCATGATGAACGTATGTCCCATTGGCAGGCAGTGCACTCGGGA
GGAGCGCAACATGTTCGCCGAATACGACATTGAGCACAAGGTGCGCGAGA
AAATGATCAAGGACCTGAAGCAGGAGTTTGCCGATGTGGATCTCACGTAC
TCGATTGGTGGTCAGATCAGCTTCGATGTCTTCCCGCATGGTTGGGACAA
GACCTACTGCCTGCGACACATCGAAGCGCACTACAAGTTCAAGGAAATCC
ACTTCTTTGGCGATAAAACGGAGCCGGGCGGCAATGACTATGAGATCTAT
AGCGATCCTCGAACCATCAGCCATAGGGTATATACTCCCAAGGATACGCA
ACGCATTCTCACCGAGATTCTGGAGCTGGCAAGCTTTCTAGACCAT
BO15978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10688-RA | 765 | CG10688-PA | 1..762 | 17..778 | 3675 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10688-RA | 924 | CG10688-RA | 66..827 | 17..778 | 3675 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12534655..12535416 | 17..778 | 3675 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-27 01:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3938..3977 | 372..333 | 110 | 75 | Minus |
BO15978.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:46 Download gff for
BO15978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-RA | 1..765 | 17..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:21 Download gff for
BO15978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-RA | 66..827 | 17..778 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:23 Download gff for
BO15978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-RA | 66..827 | 17..780 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:46 Download gff for
BO15978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-RA | 66..827 | 17..778 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:15 Download gff for
BO15978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10688-RA | 66..827 | 17..780 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:15 Download gff for
BO15978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12534655..12535416 | 17..780 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:23 Download gff for
BO15978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12527755..12528516 | 17..780 | 98 | | Plus |
BO15978.pep Sequence
Translation from 16 to 796
> BO15978.pep
MTTAALKRDEILLLFDVDGTLTMPRSVVTPEFEEFFYSRVKPRATIGIVG
GSDLEKMFEQLNGRKILNEFDFIFPENGLVQIEGGKEVGKQNIIMHLGEE
TVKRFINFVLRYLSELDVPIKRGTFIEFRNGMMNVCPIGRQCTREERNMF
AEYDIEHKVREKMIKDLKQEFADVDLTYSIGGQISFDVFPHGWDKTYCLR
HIEAHYKFKEIHFFGDKTEPGGNDYEIYSDPRTISHRVYTPKDTQRILTE
ILELASFLDH
BO15978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10688-PA | 254 | CG10688-PA | 1..254 | 1..254 | 1340 | 100 | Plus |