Clone Sequence Records
BO15979.3prime Sequence
269 bp (269 high quality bases) assembled on 2006-06-02
> BO15979.3prime
ATGGTCTAGAAAGCTTGCCTTTTTCTTGCACTCATCTTTGGATTTGTCTG
AGCCGCCGGGTTTGTTTTTGCAACGTGGTGAAGTGGGAACAACAGTTCTG
CCACACATATCCTTCTTCTTTTTGTCTTTCTTCTTTTTGGAATCGGCACC
CTTGCAAGAATCCTTGCCCGAATCCTTCGGCGATTTGGCCATTAGTCGTG
CGCCGAAAACGCCTTCACTCAATTTCATGAGCGCCAAGCTGCGCACTTTG
AACATGTCGACTGATAACT
BO15979.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32388-PA | 240 | CG32388-RA | 1..237 | 255..19 | 1185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43439-RA | 990 | CG43439-RA | 84..321 | 256..19 | 1190 | 100 | Minus |
| CG32388-RA | 990 | CG32388-RA | 84..321 | 256..19 | 1190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6984343..6984503 | 96..256 | 805 | 100 | Plus |
| 3L | 28110227 | 3L | 6984203..6984279 | 19..95 | 385 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1724..1786 | 122..60 | 99 | 61.9 | Minus |
BO15979.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:29 Download gff for
BO15979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-PA | 1..240 | 18..255 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:33 Download gff for
BO15979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-PA | 1..240 | 18..255 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:19 Download gff for
BO15979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 68..325 | 13..269 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:18 Download gff for
BO15979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 68..325 | 13..269 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:18 Download gff for
BO15979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6984199..6984279 | 13..95 | 96 | <- | Plus |
| 3L | 6984343..6984518 | 96..269 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:19 Download gff for
BO15979.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6977299..6977379 | 13..95 | 96 | <- | Plus |
| arm_3L | 6977443..6977618 | 96..269 | 97 | | Plus |
BO15979.5prime Sequence
269 bp (269 high quality bases) assembled on 2006-06-02
> BO15979.5prime
GAAGTTATCAGTCGACATGTTCAAAGTGCGCAGCTTGGCGCTCATGAAAT
TGAGTGAAGGCGTTTTCGGCGCACGACTAATGGCCAAATCGCCGAAGGAT
TCGGGCAAGGATTCTTGCAAGGGTGCCGATTCCAAAAAGAAGAAAGACAA
AAAGAAGAAGGATATGTGTGGCAGAACTGTTGTTCCCACTTCACCACGTT
GCAAAAACAAACCCGGCGGCTCAGACAAATCCAAAGATGAGTGCAAGAAA
AAGGCAAGCTTTCTAGACC
BO15979.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32388-PA | 240 | CG32388-RA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43439-RA | 990 | CG43439-RA | 84..321 | 16..253 | 1190 | 100 | Plus |
| CG32388-RA | 990 | CG32388-RA | 84..321 | 16..253 | 1190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6984343..6984503 | 176..16 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 6984203..6984279 | 253..177 | 385 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 10:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1724..1786 | 150..212 | 99 | 61.9 | Plus |
BO15979.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:30 Download gff for
BO15979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-PA | 1..240 | 17..254 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:35 Download gff for
BO15979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-PA | 1..240 | 17..254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:39:22 Download gff for
BO15979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 67..325 | 2..259 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:52 Download gff for
BO15979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 67..325 | 2..259 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:52 Download gff for
BO15979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6984343..6984519 | 2..176 | 97 | | Minus |
| 3L | 6984199..6984279 | 177..259 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:39:22 Download gff for
BO15979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6977299..6977379 | 177..259 | 96 | <- | Minus |
| arm_3L | 6977443..6977619 | 2..176 | 97 | | Minus |
BO15979.complete Sequence
271 bp (271 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633649
> BO15979.complete
GAAGTTATCAGTCGACATGTTCAAAGTGCGCAGCTTGGCGCTCATGAAAT
TGAGTGAAGGCGTTTTCGGCGCACGACTAATGGCCAAATCGCCGAAGGAT
TCGGGCAAGGATTCTTGCAAGGGTGCCGATTCCAAAAAGAAGAAAGACAA
AAAGAAGAAGGATATGTGTGGCAGAACTGTTGTTCCCACTTCACCACGTT
GCAAAAACAAACCCGGCGGCTCAGACAAATCCAAAGATGAGTGCAAGAAA
AAGGCAAGCTTTCTAGACCAT
BO15979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32388-RA | 240 | CG32388-PA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43439-RA | 990 | CG43439-RA | 84..321 | 16..253 | 1190 | 100 | Plus |
| CG32388-RA | 990 | CG32388-RA | 84..321 | 16..253 | 1190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6984343..6984503 | 176..16 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 6984203..6984279 | 253..177 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1724..1786 | 150..212 | 99 | 61.9 | Plus |
BO15979.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:47 Download gff for
BO15979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 1..240 | 17..254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:23 Download gff for
BO15979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 53..311 | 2..259 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:09 Download gff for
BO15979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 90..321 | 22..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:47 Download gff for
BO15979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 53..311 | 2..259 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:05 Download gff for
BO15979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 90..321 | 22..255 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:05 Download gff for
BO15979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6984199..6984279 | 177..255 | 97 | <- | Minus |
| 3L | 6984343..6984497 | 22..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:09 Download gff for
BO15979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6977299..6977379 | 177..255 | 97 | <- | Minus |
| arm_3L | 6977443..6977597 | 22..176 | 100 | | Minus |
BO15979.pep Sequence
Translation from 16 to 271
> BO15979.pep
MFKVRSLALMKLSEGVFGARLMAKSPKDSGKDSCKGADSKKKKDKKKKDM
CGRTVVPTSPRCKNKPGGSDKSKDECKKKASFLDH
BO15979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32388-PA | 79 | CG32388-PA | 1..79 | 1..79 | 415 | 100 | Plus |
