Clone BO15980 Report

Search the DGRC for BO15980

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptImpL2-RC
Protein status:BO15980.pep: validated full length
Sequenced Size:835

Clone Sequence Records

BO15980.3prime Sequence

749 bp (682 high quality bases) assembled on 2006-06-02

> BO15980.3prime
ATGGTCTAGAAAGCTTGCGTCTTCCTCATTAAGTACGGGATACACGAAGG
TATCGGCGGTATCCTTTCCGACGACGTTGCGGGCTATGCACTTGTAGTTG
CCCATATCCTCCCACTTGATCTCGGAGATCAGAAGATCGCCGTTGGCCAG
CACCCTGTGGCGATGTCCTTGGACGATCTCCTTGTTCTCGTTATTCAACC
AGGTGATCTCGGCGCGGGGACGGGCGTGCACGCGGCAGGGCAGCTGAATG
TTGGAGCCCATGAGGTCCAGATGCGTCTTCTCGGTGTAGATGATTCGCGG
TTTCTGGGCACCCGGGTAGGTCTTCTCCGGCGTCAGACGAGAGGAGCGAG
GAGGATGCACCACAGTGCTGGCATAGATGGTCTTGGAGCCAGTGCGTCCC
ACACACGTGTAGGTGCGGGCCTCGCTCAGCACGTGGTCGATGATATGCGA
CGATCGGACGCGCACAATGGCACTGGGCGCCTCTTCGGCAACCTGGTTGG
AGTCCAGATCATCGAGCTCCGAGCGGGGCAGGTGACCCACCACCCACTGG
ATGCTGGGCACTTGGGAGCCCATCATCTCGCAAACGATCTCGATGGTGGC
TCCATCGGCCTGCTGCAGCTTCGTCGGCGGCGTCTTGGTGAACTTGAGCC
AGTCGGCTTCGAAGGCTCGGTTGCGTGGCTTCTCTTCCTCCGCCTCGATG
GAGTTATCCACGTCGTTGCTATCGTCTACCAGGTCCACGGCTCTTCCGC

BO15980.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15009-PA 801 ImpL2-RA 68..798 749..19 3630 99.8 Minus
CG15009-PB 792 ImpL2-RB 59..789 749..19 3630 99.8 Minus
CG15009-PC 804 ImpL2-RC 71..801 749..19 3630 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 2355 CG15009-RD 791..1521 749..19 3640 99.9 Minus
ImpL2-RC 989 CG15009-RC 129..859 749..19 3640 99.9 Minus
ImpL2-RB 1651 CG15009-RB 791..1521 749..19 3640 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225645 31..749 3580 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 22:08:53 has no hits.

BO15980.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:32 Download gff for BO15980.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-PB 59..792 15..749 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:36 Download gff for BO15980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 71..804 15..749 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:43:19 Download gff for BO15980.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 791..1532 7..749 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:05 Download gff for BO15980.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 791..1532 7..749 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:05 Download gff for BO15980.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4224927..4225645 31..749 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:43:19 Download gff for BO15980.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224927..4225645 31..749 99   Plus

BO15980.5prime Sequence

781 bp (725 high quality bases) assembled on 2006-06-02

> BO15980.5prime
GAAGTTATCAGTCGACATGGAGGCGAAAATGAATTTACATGTGTGCGCCT
TAGCGCTGCTGCTGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTG
GACCTGGTAGACGATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGA
GGAGAAGCCACGCAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCA
AGACGCCGCCGACGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATC
GTTTGCGAGATGATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGG
TCACCTGCCCCGCTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCG
AAGAGGCGCCCAGTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGAC
CACGTGCTGAGCGAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTC
CAAGACCATCTATGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTC
TGACGCCGGAGAAGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTAC
ACCGAGAAGACGCATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTG
CCGCGTGCACGCCCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGA
ACAAGGAGATCGTCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGAT
CTTCTGATCTCCGAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCAT
AGCCCGCAACGTCGTCGGAAAGGATACCGCC

BO15980.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15009-PC 804 ImpL2-RC 1..765 17..781 3825 100 Plus
CG15009-PA 801 ImpL2-RA 6..762 25..781 3785 100 Plus
CG15009-PB 792 ImpL2-RB 1..753 29..781 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RC 989 CG15009-RC 59..823 17..781 3825 100 Plus
ImpL2-RD 2355 CG15009-RD 729..1485 25..781 3785 100 Plus
ImpL2-RB 1651 CG15009-RB 729..1485 25..781 3785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224951..4225707 781..25 3785 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:04:36 has no hits.

BO15980.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:33 Download gff for BO15980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 1..765 17..781 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:38 Download gff for BO15980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 1..765 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:05 Download gff for BO15980.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..823 17..781 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:49 Download gff for BO15980.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..823 17..781 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:49 Download gff for BO15980.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4224951..4225711 18..781 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:05 Download gff for BO15980.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224951..4225711 18..781 99   Minus

BO15980.complete Sequence

835 bp (835 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633650

> BO15980.complete
GAAGTTATCAGTCGACATGGAGGCGAAAATGAATTTACATGTGTGCGCCT
TAGCGCTGCTGCTGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTG
GACCTGGTAGACGATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGA
GGAGAAGCCACGCAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCA
AGACGCCGCCGACGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATC
GTTTGCGAGATGATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGG
TCACCTGCCCCGCTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCG
AAGAGGCGCCCAGTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGAC
CACGTGCTGAGCGAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTC
CAAGACCATCTATGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTC
TGACGCCGGAGAAGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTAC
ACCGAGAAGACGCATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTG
CCGCGTGCACGCCCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGA
ACAAGGAGATCGTCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGAT
CTTCTGATCTCCGAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCAT
AGCCCGCAACGTCGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCG
TACTTAATGAGGAAGACGCAAGCTTTCTAGACCAT

BO15980.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RC 804 CG15009-PC 1..801 17..817 4005 100 Plus
ImpL2-RA 801 CG15009-PA 6..798 25..817 3965 100 Plus
ImpL2-RD 792 CG15009-PD 1..789 29..817 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RC 989 CG15009-RC 59..859 17..817 4005 100 Plus
ImpL2-RD 2355 CG15009-RD 729..1521 25..817 3965 100 Plus
ImpL2-RB 1651 CG15009-RB 729..1521 25..817 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225707 805..25 3905 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:24:31 has no hits.

BO15980.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:21 Download gff for BO15980.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 1..804 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:50 Download gff for BO15980.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..870 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:08 Download gff for BO15980.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..859 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:21 Download gff for BO15980.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..870 17..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:48 Download gff for BO15980.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..859 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:48 Download gff for BO15980.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4224927..4225711 18..805 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:08 Download gff for BO15980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224927..4225711 18..805 99   Minus

BO15980.pep Sequence

Translation from 16 to 835

> BO15980.pep
MEAKMNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRN
RAFEADWLKFTKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRS
ELDDLDSNQVAEEAPSAIVRVRSSHIIDHVLSEARTYTCVGRTGSKTIYA
STVVHPPRSSRLTPEKTYPGAQKPRIIYTEKTHLDLMGSNIQLPCRVHAR
PRAEITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMGNYKCIARNVV
GKDTADTFVYPVLNEEDASFLDH

BO15980.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-PC 267 CG15009-PC 1..267 1..267 1394 100 Plus
ImpL2-PA 266 CG15009-PA 3..266 4..267 1380 100 Plus
ImpL2-PD 263 CG15009-PD 1..263 5..267 1375 100 Plus
ImpL2-PB 263 CG15009-PB 1..263 5..267 1375 100 Plus
Nrg-PH 1239 CG1634-PH 341..512 60..256 152 26.7 Plus