Clone Sequence Records
BO15980.3prime Sequence
749 bp (682 high quality bases) assembled on 2006-06-02
> BO15980.3prime
ATGGTCTAGAAAGCTTGCGTCTTCCTCATTAAGTACGGGATACACGAAGG
TATCGGCGGTATCCTTTCCGACGACGTTGCGGGCTATGCACTTGTAGTTG
CCCATATCCTCCCACTTGATCTCGGAGATCAGAAGATCGCCGTTGGCCAG
CACCCTGTGGCGATGTCCTTGGACGATCTCCTTGTTCTCGTTATTCAACC
AGGTGATCTCGGCGCGGGGACGGGCGTGCACGCGGCAGGGCAGCTGAATG
TTGGAGCCCATGAGGTCCAGATGCGTCTTCTCGGTGTAGATGATTCGCGG
TTTCTGGGCACCCGGGTAGGTCTTCTCCGGCGTCAGACGAGAGGAGCGAG
GAGGATGCACCACAGTGCTGGCATAGATGGTCTTGGAGCCAGTGCGTCCC
ACACACGTGTAGGTGCGGGCCTCGCTCAGCACGTGGTCGATGATATGCGA
CGATCGGACGCGCACAATGGCACTGGGCGCCTCTTCGGCAACCTGGTTGG
AGTCCAGATCATCGAGCTCCGAGCGGGGCAGGTGACCCACCACCCACTGG
ATGCTGGGCACTTGGGAGCCCATCATCTCGCAAACGATCTCGATGGTGGC
TCCATCGGCCTGCTGCAGCTTCGTCGGCGGCGTCTTGGTGAACTTGAGCC
AGTCGGCTTCGAAGGCTCGGTTGCGTGGCTTCTCTTCCTCCGCCTCGATG
GAGTTATCCACGTCGTTGCTATCGTCTACCAGGTCCACGGCTCTTCCGC
BO15980.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15009-PA | 801 | ImpL2-RA | 68..798 | 749..19 | 3630 | 99.8 | Minus |
CG15009-PB | 792 | ImpL2-RB | 59..789 | 749..19 | 3630 | 99.8 | Minus |
CG15009-PC | 804 | ImpL2-RC | 71..801 | 749..19 | 3630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-RD | 2355 | CG15009-RD | 791..1521 | 749..19 | 3640 | 99.9 | Minus |
ImpL2-RC | 989 | CG15009-RC | 129..859 | 749..19 | 3640 | 99.9 | Minus |
ImpL2-RB | 1651 | CG15009-RB | 791..1521 | 749..19 | 3640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4224927..4225645 | 31..749 | 3580 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:08:53 has no hits.
BO15980.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:32 Download gff for
BO15980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-PB | 59..792 | 15..749 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:36 Download gff for
BO15980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15009-PC | 71..804 | 15..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:43:19 Download gff for
BO15980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RB | 791..1532 | 7..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:05 Download gff for
BO15980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RB | 791..1532 | 7..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:05 Download gff for
BO15980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4224927..4225645 | 31..749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:43:19 Download gff for
BO15980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4224927..4225645 | 31..749 | 99 | | Plus |
BO15980.5prime Sequence
781 bp (725 high quality bases) assembled on 2006-06-02
> BO15980.5prime
GAAGTTATCAGTCGACATGGAGGCGAAAATGAATTTACATGTGTGCGCCT
TAGCGCTGCTGCTGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTG
GACCTGGTAGACGATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGA
GGAGAAGCCACGCAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCA
AGACGCCGCCGACGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATC
GTTTGCGAGATGATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGG
TCACCTGCCCCGCTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCG
AAGAGGCGCCCAGTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGAC
CACGTGCTGAGCGAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTC
CAAGACCATCTATGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTC
TGACGCCGGAGAAGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTAC
ACCGAGAAGACGCATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTG
CCGCGTGCACGCCCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGA
ACAAGGAGATCGTCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGAT
CTTCTGATCTCCGAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCAT
AGCCCGCAACGTCGTCGGAAAGGATACCGCC
BO15980.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15009-PC | 804 | ImpL2-RC | 1..765 | 17..781 | 3825 | 100 | Plus |
CG15009-PA | 801 | ImpL2-RA | 6..762 | 25..781 | 3785 | 100 | Plus |
CG15009-PB | 792 | ImpL2-RB | 1..753 | 29..781 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-RC | 989 | CG15009-RC | 59..823 | 17..781 | 3825 | 100 | Plus |
ImpL2-RD | 2355 | CG15009-RD | 729..1485 | 25..781 | 3785 | 100 | Plus |
ImpL2-RB | 1651 | CG15009-RB | 729..1485 | 25..781 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4224951..4225707 | 781..25 | 3785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:04:36 has no hits.
BO15980.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:33 Download gff for
BO15980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15009-PC | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:38 Download gff for
BO15980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15009-PC | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:05 Download gff for
BO15980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RC | 59..823 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:49 Download gff for
BO15980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RC | 59..823 | 17..781 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:49 Download gff for
BO15980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4224951..4225711 | 18..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:05 Download gff for
BO15980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4224951..4225711 | 18..781 | 99 | | Minus |
BO15980.complete Sequence
835 bp (835 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633650
> BO15980.complete
GAAGTTATCAGTCGACATGGAGGCGAAAATGAATTTACATGTGTGCGCCT
TAGCGCTGCTGCTGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTG
GACCTGGTAGACGATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGA
GGAGAAGCCACGCAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCA
AGACGCCGCCGACGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATC
GTTTGCGAGATGATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGG
TCACCTGCCCCGCTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCG
AAGAGGCGCCCAGTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGAC
CACGTGCTGAGCGAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTC
CAAGACCATCTATGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTC
TGACGCCGGAGAAGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTAC
ACCGAGAAGACGCATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTG
CCGCGTGCACGCCCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGA
ACAAGGAGATCGTCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGAT
CTTCTGATCTCCGAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCAT
AGCCCGCAACGTCGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCG
TACTTAATGAGGAAGACGCAAGCTTTCTAGACCAT
BO15980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-RC | 804 | CG15009-PC | 1..801 | 17..817 | 4005 | 100 | Plus |
ImpL2-RA | 801 | CG15009-PA | 6..798 | 25..817 | 3965 | 100 | Plus |
ImpL2-RD | 792 | CG15009-PD | 1..789 | 29..817 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-RC | 989 | CG15009-RC | 59..859 | 17..817 | 4005 | 100 | Plus |
ImpL2-RD | 2355 | CG15009-RD | 729..1521 | 25..817 | 3965 | 100 | Plus |
ImpL2-RB | 1651 | CG15009-RB | 729..1521 | 25..817 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4224927..4225707 | 805..25 | 3905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:24:31 has no hits.
BO15980.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:21 Download gff for
BO15980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RC | 1..804 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:50 Download gff for
BO15980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RC | 59..870 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:08 Download gff for
BO15980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RC | 59..859 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:21 Download gff for
BO15980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RC | 59..870 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:48 Download gff for
BO15980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RC | 59..859 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:48 Download gff for
BO15980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4224927..4225711 | 18..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:08 Download gff for
BO15980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4224927..4225711 | 18..805 | 99 | | Minus |
BO15980.pep Sequence
Translation from 16 to 835
> BO15980.pep
MEAKMNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRN
RAFEADWLKFTKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRS
ELDDLDSNQVAEEAPSAIVRVRSSHIIDHVLSEARTYTCVGRTGSKTIYA
STVVHPPRSSRLTPEKTYPGAQKPRIIYTEKTHLDLMGSNIQLPCRVHAR
PRAEITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMGNYKCIARNVV
GKDTADTFVYPVLNEEDASFLDH
BO15980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-PC | 267 | CG15009-PC | 1..267 | 1..267 | 1394 | 100 | Plus |
ImpL2-PA | 266 | CG15009-PA | 3..266 | 4..267 | 1380 | 100 | Plus |
ImpL2-PD | 263 | CG15009-PD | 1..263 | 5..267 | 1375 | 100 | Plus |
ImpL2-PB | 263 | CG15009-PB | 1..263 | 5..267 | 1375 | 100 | Plus |
Nrg-PH | 1239 | CG1634-PH | 341..512 | 60..256 | 152 | 26.7 | Plus |