Clone Sequence Records
BO15982.3prime Sequence
889 bp (679 high quality bases) assembled on 2006-06-02
> BO15982.3prime
ATGGTCTAGAAAGCTTGCGTTGATGCGACACACGCTGCTCTCGCTCTTCG
CTCTTGTCCAATTGCCATGGAACTCCTCATGACGCAAACCCATGGCCTGA
GCCTCCGACGTCGTGGAATCCGTAGTGCTGGCCAGATGGAGACGCTCCGA
AGCGAAGCTATCCAAGCTGGTGGAGTGCTTACAAGGATGGATTTTGGTCA
TGAACTCCCTTTGGCTGCAGCCTGCATTCTCCTGATTGTTCCGGATGATC
TCACGGGCAAAACGGGCCAATAACTTCTGTTTGTGGTGACGCTTGCTGAG
TGGTCCATGGGCACAGTTCTCTCGGATCCAGCGACGAGCCTCCCGACATC
CTAGATATATACTCTGGTTGCTAAACGTCTTTGTATCCAACATGAAGCCA
CGATTGCCCAGCAGTCCGAAGCCCAGATCGAAAATATTGCGACCCAGGTT
GAGCGGATTTGGTCCGTCCTTGGACTGGAACTTATTCGGACCGACGGCAT
CCATAGGCTCCTTGGTTTCCTGGTAGAATCGGCGATCCTCCGGCGTGCAA
TACGTCCAGGGTTTGAAACTCATCGTGTAATGATCCTTCATCTCAAAGTC
GACGGGCAGACTATCATTGAAGTTAACCTGATCGATCGAGACCAGTCTGC
CATTGTGATGGGTTACTTGATAGGTAACGCCCAAGGAATCAGGAATTTGT
ATGGTGCCTTTTCCGTGGAAACGATTGTTGAGAAACTCTCCCGTGTAGCA
TGTCCCATCCGGATAAATGTAGACACCCATCTCCTGCATGCCCAACTCAT
CACTGGGACCCACGTATCTGGATCCAGTCAACAGAATATCAACCTGGGTA
ATGCTTGAAGATTTTGTTGTCTTCTGCTCCATGTCGACT
BO15982.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-PA | 867 | CG3306-RA | 1..864 | 882..19 | 4295 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-RA | 1026 | CG3306-RA | 73..937 | 883..19 | 4310 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9601595..9602459 | 883..19 | 4310 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:39:13 has no hits.
BO15982.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:36 Download gff for
BO15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-PA | 1..867 | 16..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:43 Download gff for
BO15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-PA | 1..867 | 16..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:52 Download gff for
BO15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 70..937 | 19..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:52 Download gff for
BO15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 70..937 | 19..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:52 Download gff for
BO15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9601592..9602459 | 19..889 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:52 Download gff for
BO15982.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9594692..9595559 | 19..889 | 99 | | Minus |
BO15982.5prime Sequence
821 bp (749 high quality bases) assembled on 2006-06-02
> BO15982.5prime
GAAGTTATCAGTCGACATGGAGCAGAAGACAACAAAATCTTCAAGCATTA
CCCAGGTTGATATTCTGTTGACTGGATCCAGATACGTTGGTCCCAGTGAT
GAGTTGGGCATGCAGGAGATGGGTGTCTACATTTATCCGGATGGGACATG
CTACACGGGAGAGTTTCTCAACAATCGTTTCCACGGAAAAGGCACCATAC
AAATTCCTGATTCCTTGGGCGTTACCTATCAAGTAACCCATCACAATGGC
AGACTGGTCTCGATCGATCAGGTTAACTTCAATGATAGTCTGCCCGTCGA
CTTTGAGATGAAGGATCATTACACGATGAGTTTCAAACCCTGGACGTATT
GCACGCCGGAGGATCGCCGATTCTACCAGGAAACCAAGGAGCCTATGGAT
GCCGTCGGTCCGAATAAGTTCCAGTCCAAGGACGGACCAAATCCGCTCAA
CCTGGGTCGCAATATTTTCGATCTGGGCTTCGGACTGCTGGGCAATCGTG
GCTTCATGTTGGATACAAAGACGTTTAGCAACCAGAGTATATATCTAGGA
TGTCGGGAGGCTCGTCGCTGGATCCGAGAGAACTGTGCCCATGGACCACT
CAGCAAGCGTCACCACAAACAGAAGTTATTGGCCCGTTTTGCCCGTGAGA
TCATCCGGAACAATCAGGAGAATGCAGGCTGCAGCCAAAGGGAGTTCATG
ACCAAAATCCATCCTTGTAAGCACTCCACCAGCTTGGATAGCTTCGCTTC
GGAGCGTCTCCATCTGGCCAGCACTACGGATTCCACGACGTCGGAAGCTC
AGGCCATGGGTTTGCGTCATG
BO15982.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-PA | 867 | CG3306-RA | 1..805 | 17..821 | 4000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-RA | 1026 | CG3306-RA | 73..878 | 16..821 | 4015 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9601595..9602400 | 16..821 | 4015 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:52:03 has no hits.
BO15982.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:37 Download gff for
BO15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:44 Download gff for
BO15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:22 Download gff for
BO15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..878 | 16..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:49 Download gff for
BO15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..878 | 16..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:49 Download gff for
BO15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9601595..9602400 | 16..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:22 Download gff for
BO15982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9594695..9595500 | 16..821 | 99 | | Plus |
BO15982.complete Sequence
898 bp (898 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633652
> BO15982.complete
GAAGTTATCAGTCGACATGGAGCAGAAGACAACAAAATCTTCAAGCATTA
CCCAGGTTGATATTCTGTTGACTGGATCCAGATACGTTGGTCCCAGTGAT
GAGTTGGGCATGCAGGAGATGGGTGTCTACATTTATCCGGATGGGACATG
CTACACGGGAGAGTTTCTCAACAATCGTTTCCACGGAAAAGGCACCATAC
AAATTCCTGATTCCTTGGGCGTTACCTATCAAGTAACCCATCACAATGGC
AGACTGGTCTCGATCGATCAGGTTAACTTCAATGATAGTCTGCCCGTCGA
CTTTGAGATGAAGGATCATTACACGATGAGTTTCAAACCCTGGACGTATT
GCACGCCGGAGGATCGCCGATTCTACCAGGAAACCAAGGAGCCTATGGAT
GCCGTCGGTCCGAATAAGTTCCAGTCCAAGGACGGACCAAATCCGCTCAA
CCTGGGTCGCAATATTTTCGATCTGGGCTTCGGACTGCTGGGCAATCGTG
GCTTCATGTTGGATACAAAGACGTTTAGCAACCAGAGTATATATCTAGGA
TGTCGGGAGGCTCGTCGCTGGATCCGAGAGAACTGTGCCCATGGACCACT
CAGCAAGCGTCACCACAAACAGAAGTTATTGGCCCGTTTTGCCCGTGAGA
TCATCCGGAACAATCAGGAGAATGCAGGCTGCAGCCAAAGGGAGTTCATG
ACCAAAATCCATCCTTGTAAGCACTCCACCAGCTTGGATAGCTTCGCTTC
GGAGCGTCTCCATCTGGCCAGCACTACGGATTCCACGACGTCGGAGGCTC
AGGCCATGGGTTTGCGTCATGAGGAGTTCCATGGCAATTGGACAAGAGCG
AAGAGCGAGAGCAGCGTGTGTCGCATCAACGCAAGCTTTCTAGACCAT
BO15982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-RA | 867 | CG3306-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-RA | 1026 | CG3306-RA | 73..937 | 16..880 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9601595..9602459 | 16..880 | 4325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:53:53 has no hits.
BO15982.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:21 Download gff for
BO15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:31 Download gff for
BO15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..937 | 16..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:39 Download gff for
BO15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 74..937 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:21 Download gff for
BO15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..937 | 16..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:11 Download gff for
BO15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 74..937 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:11 Download gff for
BO15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9601596..9602459 | 17..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:39 Download gff for
BO15982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9594696..9595559 | 17..882 | 99 | | Plus |
BO15982.pep Sequence
Translation from 16 to 898
> BO15982.pep
MEQKTTKSSSITQVDILLTGSRYVGPSDELGMQEMGVYIYPDGTCYTGEF
LNNRFHGKGTIQIPDSLGVTYQVTHHNGRLVSIDQVNFNDSLPVDFEMKD
HYTMSFKPWTYCTPEDRRFYQETKEPMDAVGPNKFQSKDGPNPLNLGRNI
FDLGFGLLGNRGFMLDTKTFSNQSIYLGCREARRWIRENCAHGPLSKRHH
KQKLLARFAREIIRNNQENAGCSQREFMTKIHPCKHSTSLDSFASERLHL
ASTTDSTTSEAQAMGLRHEEFHGNWTRAKSESSVCRINASFLDH
BO15982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-PA | 288 | CG3306-PA | 1..288 | 1..288 | 1554 | 100 | Plus |
| CG3222-PA | 379 | CG3222-PA | 8..210 | 12..216 | 245 | 30.8 | Plus |
