Clone BO15983 Report

Search the DGRC for BO15983

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG11875-RA
Protein status:BO15983.pep: validated full length
Sequenced Size:994

Clone Sequence Records

BO15983.5prime Sequence

813 bp (749 high quality bases) assembled on 2006-06-02

> BO15983.5prime
GAAGTTATCAGTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCC
AGCTTAATGAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCC
TACAACCTAATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGT
TGGACTGCCGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACA
TGGACCTGGGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCG
CCGGACACCTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGC
CAACGGCAGCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCT
CGCTCCAGGTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGG
GTTTGCGACGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAG
ATTCTGGACGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGT
CCTCCGCTGGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTT
CTTGTGGCGGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAA
GCAGACAGTCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGG
ACTGGGCCCACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGAT
GTGGTTACCTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCA
GGTCCACGAGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCG
AGATGGTTATCGC

BO15983.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11875-PA 963 CG11875-RA 1..797 17..813 3985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-RB 1139 CG11875-RB 125..921 17..813 3985 100 Plus
Nup37-RA 1107 CG11875-RA 93..889 17..813 3985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25248172..25248582 160..570 2055 100 Plus
3R 32079331 3R 25248638..25248882 569..813 1225 100 Plus
3R 32079331 3R 25247963..25248107 17..161 725 100 Plus
Blast to na_te.dros performed on 2015-02-02 07:35:43 has no hits.

BO15983.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:38 Download gff for BO15983.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11875-PA 1..797 17..813 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:46 Download gff for BO15983.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11875-PA 1..797 17..813 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:08 Download gff for BO15983.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 87..889 10..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:40 Download gff for BO15983.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 87..889 10..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:40 Download gff for BO15983.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25247957..25248106 10..160 97 -> Plus
3R 25248173..25248581 161..569 100 -> Plus
3R 25248639..25248882 570..813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:08 Download gff for BO15983.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21073679..21073828 10..160 97 -> Plus
arm_3R 21073895..21074303 161..569 100 -> Plus
arm_3R 21074361..21074604 570..813 100   Plus

BO15983.complete Sequence

994 bp (994 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633653

> BO15983.complete
GAAGTTATCAGTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCC
AGCTTAATGAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCC
TACAACCTAATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGT
TGGACTGCCGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACA
TGGACCTGGGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCG
CCGGACACCTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGC
CAACGGCAGCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCT
CGCTCCAGGTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGG
GTTTGCGACGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAG
ATTCTGGACGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGT
CCTCCGCTGGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTT
CTTGTGGCGGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAA
GCAGACAGTCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGG
ACTGGGCCCACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGAT
GTGGTTACCTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCA
GGTCCACGAGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCG
AGATGGTTATCGCCATGGTCATCGGGCTGACTCTCAAAGTGTTCGCGGCC
AAGTCGACCGTTCCTCTGCTGGAGGCCTCCCTGAAATCCTATGGGGGAAT
GGCCTGGCACCAGCGATTGCCGTACATTAGTGCGGTTTCCGATAGGAAAC
TGCTCTTCTGGAAAGTGCAAATGAAGGCAAGCTTTCTAGACCAT

BO15983.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-RB 963 CG11875-PB 1..960 17..976 4800 100 Plus
Nup37-RA 963 CG11875-PA 1..960 17..976 4800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-RB 1139 CG11875-RB 125..1084 17..976 4800 100 Plus
Nup37-RA 1107 CG11875-RA 93..1052 17..976 4800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25248172..25248582 160..570 2055 100 Plus
3R 32079331 3R 25248638..25249045 569..976 2040 100 Plus
3R 32079331 3R 25247963..25248107 17..161 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:51:07 has no hits.

BO15983.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:29 Download gff for BO15983.complete
Subject Subject Range Query Range Percent Splice Strand
CG11875-RA 1..963 17..980 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:05 Download gff for BO15983.complete
Subject Subject Range Query Range Percent Splice Strand
CG11875-RA 80..1051 10..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:27 Download gff for BO15983.complete
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 93..1052 17..978 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:29 Download gff for BO15983.complete
Subject Subject Range Query Range Percent Splice Strand
CG11875-RA 80..1051 10..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:06 Download gff for BO15983.complete
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 93..1052 17..978 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:06 Download gff for BO15983.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25247963..25248106 17..160 100 -> Plus
3R 25248173..25248581 161..569 100 -> Plus
3R 25248639..25249045 570..978 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:27 Download gff for BO15983.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21073685..21073828 17..160 100 -> Plus
arm_3R 21073895..21074303 161..569 100 -> Plus
arm_3R 21074361..21074767 570..978 99   Plus

BO15983.pep Sequence

Translation from 16 to 994

> BO15983.pep
MRSVIEPDHSIQLNEAIYCYDICTNDFAYNLIAVAFRKHLSLLLVGLPEE
SGEFGYTRLQDMDLGEKEQRSVSALAFSPDTSLNCTPNNVTLCAANGSQL
KLYRTDLGQFTSLQVLRGHGDYVNDVSWVCDGELLASVSDDFTCRFWTTT
GGGENVITFGLSSAGMSVKSHPEDPNKVLVAEKKGIIHLYNVTLKQTVIS
VESPKFPLMSADWAHSNRLFITSLAGGDVVTWDLNRPYVPADVKQVHEDC
GRVVRFAPGSSEMVIAMVIGLTLKVFAAKSTVPLLEASLKSYGGMAWHQR
LPYISAVSDRKLLFWKVQMKASFLDH

BO15983.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-PB 320 CG11875-PB 1..320 1..320 1672 100 Plus
Nup37-PA 320 CG11875-PA 1..320 1..320 1672 100 Plus
CG10931-PA 345 CG10931-PA 60..254 81..279 174 28.6 Plus