Clone Sequence Records
BO15983.5prime Sequence
813 bp (749 high quality bases) assembled on 2006-06-02
> BO15983.5prime
GAAGTTATCAGTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCC
AGCTTAATGAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCC
TACAACCTAATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGT
TGGACTGCCGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACA
TGGACCTGGGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCG
CCGGACACCTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGC
CAACGGCAGCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCT
CGCTCCAGGTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGG
GTTTGCGACGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAG
ATTCTGGACGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGT
CCTCCGCTGGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTT
CTTGTGGCGGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAA
GCAGACAGTCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGG
ACTGGGCCCACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGAT
GTGGTTACCTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCA
GGTCCACGAGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCG
AGATGGTTATCGC
BO15983.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11875-PA | 963 | CG11875-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-RB | 1139 | CG11875-RB | 125..921 | 17..813 | 3985 | 100 | Plus |
Nup37-RA | 1107 | CG11875-RA | 93..889 | 17..813 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25248172..25248582 | 160..570 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 25248638..25248882 | 569..813 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 25247963..25248107 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 07:35:43 has no hits.
BO15983.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:38 Download gff for
BO15983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:46 Download gff for
BO15983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:08 Download gff for
BO15983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 87..889 | 10..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:40 Download gff for
BO15983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 87..889 | 10..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:40 Download gff for
BO15983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25247957..25248106 | 10..160 | 97 | -> | Plus |
3R | 25248173..25248581 | 161..569 | 100 | -> | Plus |
3R | 25248639..25248882 | 570..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:08 Download gff for
BO15983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21073679..21073828 | 10..160 | 97 | -> | Plus |
arm_3R | 21073895..21074303 | 161..569 | 100 | -> | Plus |
arm_3R | 21074361..21074604 | 570..813 | 100 | | Plus |
BO15983.complete Sequence
994 bp (994 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633653
> BO15983.complete
GAAGTTATCAGTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCC
AGCTTAATGAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCC
TACAACCTAATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGT
TGGACTGCCGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACA
TGGACCTGGGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCG
CCGGACACCTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGC
CAACGGCAGCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCT
CGCTCCAGGTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGG
GTTTGCGACGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAG
ATTCTGGACGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGT
CCTCCGCTGGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTT
CTTGTGGCGGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAA
GCAGACAGTCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGG
ACTGGGCCCACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGAT
GTGGTTACCTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCA
GGTCCACGAGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCG
AGATGGTTATCGCCATGGTCATCGGGCTGACTCTCAAAGTGTTCGCGGCC
AAGTCGACCGTTCCTCTGCTGGAGGCCTCCCTGAAATCCTATGGGGGAAT
GGCCTGGCACCAGCGATTGCCGTACATTAGTGCGGTTTCCGATAGGAAAC
TGCTCTTCTGGAAAGTGCAAATGAAGGCAAGCTTTCTAGACCAT
BO15983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-RB | 963 | CG11875-PB | 1..960 | 17..976 | 4800 | 100 | Plus |
Nup37-RA | 963 | CG11875-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-RB | 1139 | CG11875-RB | 125..1084 | 17..976 | 4800 | 100 | Plus |
Nup37-RA | 1107 | CG11875-RA | 93..1052 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25248172..25248582 | 160..570 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 25248638..25249045 | 569..976 | 2040 | 100 | Plus |
3R | 32079331 | 3R | 25247963..25248107 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:51:07 has no hits.
BO15983.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:29 Download gff for
BO15983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-RA | 1..963 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:05 Download gff for
BO15983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-RA | 80..1051 | 10..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:27 Download gff for
BO15983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 93..1052 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:29 Download gff for
BO15983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-RA | 80..1051 | 10..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:06 Download gff for
BO15983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 93..1052 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:06 Download gff for
BO15983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25247963..25248106 | 17..160 | 100 | -> | Plus |
3R | 25248173..25248581 | 161..569 | 100 | -> | Plus |
3R | 25248639..25249045 | 570..978 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:27 Download gff for
BO15983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21073685..21073828 | 17..160 | 100 | -> | Plus |
arm_3R | 21073895..21074303 | 161..569 | 100 | -> | Plus |
arm_3R | 21074361..21074767 | 570..978 | 99 | | Plus |
BO15983.pep Sequence
Translation from 16 to 994
> BO15983.pep
MRSVIEPDHSIQLNEAIYCYDICTNDFAYNLIAVAFRKHLSLLLVGLPEE
SGEFGYTRLQDMDLGEKEQRSVSALAFSPDTSLNCTPNNVTLCAANGSQL
KLYRTDLGQFTSLQVLRGHGDYVNDVSWVCDGELLASVSDDFTCRFWTTT
GGGENVITFGLSSAGMSVKSHPEDPNKVLVAEKKGIIHLYNVTLKQTVIS
VESPKFPLMSADWAHSNRLFITSLAGGDVVTWDLNRPYVPADVKQVHEDC
GRVVRFAPGSSEMVIAMVIGLTLKVFAAKSTVPLLEASLKSYGGMAWHQR
LPYISAVSDRKLLFWKVQMKASFLDH
BO15983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-PB | 320 | CG11875-PB | 1..320 | 1..320 | 1672 | 100 | Plus |
Nup37-PA | 320 | CG11875-PA | 1..320 | 1..320 | 1672 | 100 | Plus |
CG10931-PA | 345 | CG10931-PA | 60..254 | 81..279 | 174 | 28.6 | Plus |