Clone Sequence Records
BO15984.5prime Sequence
284 bp (284 high quality bases) assembled on 2006-06-02
> BO15984.5prime
GAAGTTATCAGTCGACATGTGTTGGGCGACATCAGGTTCAAGTTTTCGAA
CCGAAAGCACCAGATCCATAATCCAAATGTTTAAATCCGACGTCCTTGTC
TTGGCCATCGTCTCCTGCTCTGCTGCCAAGCCTGGACTGATTGGTGCGCC
TTTGGCCTACACTGCTTACGTGGCTTACTCTCCTCTGGCTGTACTAATGG
CCTACCCCTCGCCTTTGGCCTACTCCGCACCACTGAGCTACGCCGTTCCA
TCTGCACCGCTTCTTATCGCAAGCTTTCTAGACC
BO15984.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32207-PA | 255 | CG32207-RA | 1..252 | 17..268 | 1260 | 100 | Plus |
CG12519-PA | 396 | CG12519-RA | 323..393 | 198..268 | 280 | 95.7 | Plus |
CG32213-PA | 465 | CG32213-RA | 374..437 | 180..243 | 195 | 92.1 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 374..437 | 180..243 | 195 | 92.1 | Plus |
CG32214-PA | 426 | CG32214-RA | 335..400 | 180..245 | 180 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18294-RA | 507 | CG18294-RA | 14..163 | 36..185 | 345 | 82 | Plus |
CG12519-RB | 600 | CG12519-RB | 12..161 | 36..185 | 345 | 82 | Plus |
CG12519-RA | 507 | CG12519-RA | 12..161 | 36..185 | 345 | 82 | Plus |
CG12519-RB | 600 | CG12519-RB | 357..445 | 180..268 | 340 | 92.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19477672..19477851 | 268..89 | 900 | 100 | Minus |
3L | 28110227 | 3L | 19423378..19423450 | 89..17 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19477906..19477978 | 89..17 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19472902..19472990 | 180..268 | 340 | 92.1 | Plus |
3L | 28110227 | 3L | 19487161..19487225 | 89..25 | 325 | 100 | Minus |
3L | 28110227 | 3L | 19486803..19486873 | 267..197 | 295 | 94.4 | Minus |
3L | 28110227 | 3L | 19467718..19467806 | 180..268 | 265 | 86.5 | Plus |
3L | 28110227 | 3L | 19423273..19423323 | 139..89 | 255 | 100 | Minus |
3L | 28110227 | 3L | 19471732..19471820 | 268..180 | 250 | 85.4 | Minus |
3L | 28110227 | 3L | 19476247..19476335 | 180..268 | 250 | 85.4 | Plus |
3L | 28110227 | 3L | 19422979..19423050 | 268..197 | 240 | 88.9 | Minus |
3L | 28110227 | 3L | 19467017..19467093 | 89..17 | 215 | 88.3 | Minus |
3L | 28110227 | 3L | 19472479..19472555 | 17..89 | 215 | 88.3 | Plus |
3L | 28110227 | 3L | 19475512..19475588 | 89..17 | 215 | 88.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:40:44 has no hits.
BO15984.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:39 Download gff for
BO15984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-PA | 1..255 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:47 Download gff for
BO15984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-PA | 1..255 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-31 10:30:53 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 00:10:47 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:47 Download gff for
BO15984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19477666..19477851 | 89..276 | 97 | <- | Minus |
3L | 19477907..19477980 | 14..88 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:53 Download gff for
BO15984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19470766..19470951 | 89..276 | 97 | <- | Minus |
arm_3L | 19471007..19471080 | 14..88 | 98 | | Minus |
BO15984.complete Sequence
286 bp (286 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633654
> BO15984.complete
GAAGTTATCAGTCGACATGTGTTGGGCGACATCAGGTTCAAGTTTTCGAA
CCGAAAGCACCAGATCCATAATCCAAATGTTTAAATCCGACGTCCTTGTC
TTGGCCATCGTCTCCTGCTCTGCTGCCAAGCCTGGACTGATTGGTGCGCC
TTTGGCCTACACTGCTTACGTGGCTTACTCTCCTCTGGCTGTACTAATGG
CCTACCCCTCGCCTTTGGCCTACTCCGCACCACTGAGCTACGCCGTTCCA
TCTGCACCGCTTCTTATCGCAAGCTTTCTAGACCAT
BO15984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 396 | CG12519-PB | 305..393 | 180..268 | 340 | 92.1 | Plus |
CG12519-RA | 396 | CG12519-PA | 305..393 | 180..268 | 340 | 92.1 | Plus |
CG32214-RC | 351 | CG32214-PC | 260..348 | 180..268 | 265 | 86.5 | Plus |
CG12519-RB | 396 | CG12519-PB | 1..109 | 77..185 | 185 | 78 | Plus |
CG12519-RA | 396 | CG12519-PA | 1..109 | 77..185 | 185 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18294-RA | 507 | CG18294-RA | 14..163 | 36..185 | 345 | 82 | Plus |
CG12519-RB | 600 | CG12519-RB | 12..161 | 36..185 | 345 | 82 | Plus |
CG12519-RA | 507 | CG12519-RA | 12..161 | 36..185 | 345 | 82 | Plus |
CG12519-RB | 600 | CG12519-RB | 357..445 | 180..268 | 340 | 92.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19477672..19477851 | 268..89 | 900 | 100 | Minus |
3L | 28110227 | 3L | 19423378..19423450 | 89..17 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19477906..19477978 | 89..17 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19472902..19472990 | 180..268 | 340 | 92.1 | Plus |
3L | 28110227 | 3L | 19487161..19487225 | 89..25 | 325 | 100 | Minus |
3L | 28110227 | 3L | 19486803..19486873 | 267..197 | 295 | 94.4 | Minus |
3L | 28110227 | 3L | 19467718..19467806 | 180..268 | 265 | 86.5 | Plus |
3L | 28110227 | 3L | 19423273..19423323 | 139..89 | 255 | 100 | Minus |
3L | 28110227 | 3L | 19471732..19471820 | 268..180 | 250 | 85.4 | Minus |
3L | 28110227 | 3L | 19476247..19476335 | 180..268 | 250 | 85.4 | Plus |
3L | 28110227 | 3L | 19422979..19423050 | 268..197 | 240 | 88.9 | Minus |
3L | 28110227 | 3L | 19467017..19467093 | 89..17 | 215 | 88.3 | Minus |
3L | 28110227 | 3L | 19472479..19472555 | 17..89 | 215 | 88.3 | Plus |
3L | 28110227 | 3L | 19475512..19475588 | 89..17 | 215 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:06:23 has no hits.
BO15984.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:31 Download gff for
BO15984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-RA | 1..255 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:37 Download gff for
BO15984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-RA | 486..745 | 14..276 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 19:45:37 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:31 Download gff for
BO15984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-RA | 486..745 | 14..276 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:14:31 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:31 Download gff for
BO15984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19477670..19477851 | 89..270 | 98 | <- | Minus |
3L | 19477907..19477978 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:37 Download gff for
BO15984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19470770..19470951 | 89..270 | 98 | <- | Minus |
arm_3L | 19471007..19471078 | 17..88 | 100 | | Minus |
BO15984.pep Sequence
Translation from 16 to 286
> BO15984.pep
MCWATSGSSFRTESTRSIIQMFKSDVLVLAIVSCSAAKPGLIGAPLAYTA
YVAYSPLAVLMAYPSPLAYSAPLSYAVPSAPLLIASFLDH
BO15984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32214-PC | 116 | CG32214-PC | 1..116 | 21..84 | 175 | 41.4 | Plus |
CG32214-PB | 116 | CG32214-PB | 1..116 | 21..84 | 175 | 41.4 | Plus |
CG14096-PA | 122 | CG14096-PA | 1..57 | 21..86 | 171 | 56.1 | Plus |
CG12519-PB | 131 | CG12519-PB | 1..57 | 21..86 | 171 | 56.1 | Plus |
CG12519-PA | 131 | CG12519-PA | 1..57 | 21..86 | 171 | 56.1 | Plus |