BO15987.complete Sequence
1030 bp (1030 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633656
> BO15987.complete
GAAGTTATCAGTCGACATGTCGGAAACCAGTGGACCCGCAGTGCGCATGC
CTTGGGTGGAAAAGTACAGACCAAGCGGTCTCGATGATTTGATATCTCAC
GAGGAAATAATATCAACAATAACCCGCTTTATAAGCCGCAAGCAGCTGCC
CCATTTGCTGTTCTACGGACCACCTGGCACGGGAAAAACGAGTACAATCC
TGGCCTGCGCTCGCCAATTGTATTCCCCTCAGCAGTTCAAGTCCATGGTC
CTGGAGCTGAATGCCTCAGATGACCGAGGCATTGGGATTGTGCGCGGTCA
AATCCTTAACTTCGCGTCCACACGCACCATTTTCTGCGACACCTTTAAGC
TGATCATTTTGGACGAGGCCGATGCCATGACCAACGATGCCCAGAATGCC
CTGCGCCGCATAATTGAGAAATATACGGACAACGTGCGCTTCTGTGTGAT
TTGCAATTATTTGAGCAAAATCATTCCGGCCCTGCAGTCGCGTTGCACCC
GTTTTCGGTTCGCTCCATTATCCCAGGATCAGATGATGCCGCGACTAGAA
AAAATCATCGAAGCCGAAGCTGTTCAGATAACTGAGGACGGCAAGCGGGC
ACTGCTGACCCTGGCCAAAGGTGATATGAGAAAGGTCTTGAACGTCCTGC
AGAGTACCGTGATGGCATTTGATACGGTCAACGAGGATAACGTCTACATG
TGCGTGGGCTATCCGTTGAGGCAGGATATTGAACAGATATTGAAGGCCTT
GCTATCTGGCAGTAGCTTGGAGGACTCCTTCAAAACTGTCGAAAGTGCCA
AGTACGCAAGAGGTCTCGCTCTGGAAGACATCATTACAGAATTGCATTTG
TTCGTTATGAGACTTGAGCTGCCTATGTCGGTCATGAACAAGCTTATTGT
AAAGCTAGCTCAGATCGAGGAGAGATTGGCCAAAGGATGTACAGAAGTGG
CTCAAACTGCAGCTCTGGTAGCCGCCTTCTTTATTTGCCGAGATATGGTT
TCAATGGAGAAGGCAAGCTTTCTAGACCAT
BO15987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC3-RA | 999 | CG5313-PA | 1..996 | 17..1012 | 4845 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC3-RA | 1134 | CG5313-RA | 76..1071 | 17..1012 | 4845 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10419480..10419930 | 120..570 | 2195 | 99.1 | Plus |
| 2L | 23513712 | 2L | 10419992..10420205 | 572..785 | 1040 | 99.1 | Plus |
| 2L | 23513712 | 2L | 10420401..10420549 | 864..1012 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 10420268..10420345 | 786..863 | 360 | 97.4 | Plus |
| 2L | 23513712 | 2L | 10419358..10419423 | 54..119 | 330 | 100 | Plus |
| 2L | 23513712 | 2L | 10419265..10419303 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:18:55 has no hits.
BO15987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:40 Download gff for
BO15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 1..999 | 17..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:45 Download gff for
BO15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 55..1054 | 17..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:14 Download gff for
BO15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 76..1071 | 17..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:40 Download gff for
BO15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 55..1054 | 17..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:44 Download gff for
BO15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 76..1071 | 17..1014 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:44 Download gff for
BO15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10419359..10419423 | 55..119 | 100 | -> | Plus |
| 2L | 10419265..10419302 | 17..54 | 100 | -> | Plus |
| 2L | 10419480..10419930 | 120..570 | 99 | -> | Plus |
| 2L | 10419991..10420205 | 571..785 | 98 | -> | Plus |
| 2L | 10420268..10420345 | 786..863 | 97 | -> | Plus |
| 2L | 10420401..10420549 | 864..1014 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:14 Download gff for
BO15987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10419265..10419302 | 17..54 | 100 | -> | Plus |
| arm_2L | 10419359..10419423 | 55..119 | 100 | -> | Plus |
| arm_2L | 10419480..10419930 | 120..570 | 99 | -> | Plus |
| arm_2L | 10419991..10420205 | 571..785 | 98 | -> | Plus |
| arm_2L | 10420268..10420345 | 786..863 | 97 | -> | Plus |
| arm_2L | 10420401..10420549 | 864..1014 | 98 | | Plus |
BO15987.pep Sequence
Translation from 16 to 1030
> BO15987.pep
MSETSGPAVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFY
GPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFA
STRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLS
KIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLA
KGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSS
LEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQI
EERLAKGCTEVAQTAALVAAFFICRDMVSMEKASFLDH
BO15987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC3-PA | 332 | CG5313-PA | 1..332 | 1..332 | 1670 | 100 | Plus |
| CG8142-PA | 353 | CG8142-PA | 31..303 | 12..273 | 533 | 40.1 | Plus |
| RfC4-PA | 331 | CG14999-PA | 16..329 | 11..326 | 486 | 34.4 | Plus |
| RfC38-PB | 356 | CG6258-PB | 4..339 | 13..321 | 267 | 25.9 | Plus |
| RfC38-PA | 356 | CG6258-PA | 4..339 | 13..321 | 267 | 25.9 | Plus |
