Clone BO15989 Report

Search the DGRC for BO15989

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG15728-RA
Protein status:BO15989.pep: validated full length
Sequenced Size:928

Clone Sequence Records

BO15989.5prime Sequence

875 bp (770 high quality bases) assembled on 2006-06-02

> BO15989.5prime
GAAGTTATCAGTCGACATGGCAGAATACAACATGAGCCACATGGTGCGAC
CCCAGGGATTCAGTTTGGAAGAGCTGCGTCAGACTATGAGTCGATCGGCG
ATTCGGGAACAATGCTACTTTATTTATGCCACCGGCAATATTCTGGAGAT
TATATCTGGTTTTGATGAACTGCTCAACCAGGAGGGGATCCAATTCGGAG
CAGATAAACTGGCTGCGGTGTATGTATGCGGTTTGATGGTTTATCTACTC
CATCATGAGGACACGTCGGCCACCCAGGTGAAAAGAACTCTTTTCCTGCA
AAAGTGCTTCAATTATATGGCATGCTCCGAGGAAAGCCATATCCACCAGG
TATGCGTCCATGTCCTGGGTCTCTTGGATATCCAGAGTTCGAGCACAATG
CTCAACCTGATCCTCGGCTGCCGCGTGGCCAGTCCGCTGTGCACAATGGC
CAGCGTTGTGGCTAACTGTCTGCTCTGGGCCATGTTGGATCATATGTCGG
ACTTGGGCCTGGACTTGCACCGATTGCGTCCGGCTAACACACTGCTGCTC
GTCGTTGCCGTGGTGAAGCCGCATATTTATGTAATATCCTATTTGCATTC
CCTGCACCTGGTGGTCCGTTTGATATCCAGCATCCTGCTGATCGGACCAT
TCAATGCCCAGGGCCAGCAACTGTGCCAGGAGACCGATGTGCCGGAGGAT
TATATGAAACTGGCCAGGGACGATTGTTCGATATTAGTTCGCTGGCTAAT
CGCGATCGTTGATGAGCTGCGTCCGCTGATGGTGGAGAACAACGATTTGG
GGCATCTGCATGAGCGCCTGGTGCTTTTGGAGTCCATATGTGAGCTTATG
CAGCTCTTGCATGGCCCTTTGGTTA

BO15989.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15728-PA 897 CG15728-RA 1..859 17..875 4270 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15728-RB 1250 CG15728-RB 158..1016 17..875 4280 99.9 Plus
CG15728-RA 1140 CG15728-RA 70..928 17..875 4280 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12627677..12628211 341..875 2660 99.8 Plus
X 23542271 X 12627419..12627612 147..340 970 100 Plus
X 23542271 X 12627233..12627364 17..148 660 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:11:17 has no hits.

BO15989.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:43 Download gff for BO15989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15728-PA 1..858 17..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:51 Download gff for BO15989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15728-PA 1..858 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:52 Download gff for BO15989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 61..927 8..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:57 Download gff for BO15989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 61..927 8..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:57 Download gff for BO15989.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12627224..12627364 8..148 97 -> Plus
X 12627421..12627612 149..340 100 -> Plus
X 12627677..12628210 341..874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:52 Download gff for BO15989.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12521257..12521397 8..148 97 -> Plus
arm_X 12521454..12521645 149..340 100 -> Plus
arm_X 12521710..12522243 341..874 99   Plus

BO15989.complete Sequence

928 bp (928 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ638746

> BO15989.complete
GAAGTTATCAGTCGACATGGCAGAATACAACATGAGCCACATGGTGCGAC
CCCAGGGATTCAGTTTGGAAGAGCTGCGTCAGACTATGAGTCGATCGGCG
ATTCGGGAACAATGCTACTTTATTTATGCCACCGGCAATATTCTGGAGAT
TATATCTGGTTTTGATGAACTGCTCAACCAGGAGGGGATCCAATTCGGAG
CAGATAAACTGGCTGCGGTGTATGTATGCGGTTTGATGGTTTATCTACTC
CATCATGAGGACACGTCGGCCACCCAGGTGAAAAGAACTCTTTTCCTGCA
AAAGTGCTTCAATTATATGGCATGCTCCGAGGAAAGCCATATCCACCAGG
TATGCGTCCATGTCCTGGGTCTCTTGGATATCCAGAGTTCGAGCACAATG
CTCAACCTGATCCTCGGCTGCCGCGTGGCCAGTCCGCTGTGCACAATGGC
CAGCGTTGTGGCTAACTGTCTGCTCTGGGCCATGTTGGATCATATGTCGG
ACTTGGGCCTGGACTTGCACCGATTGCGTCCGGCTAACACACTGCTGCTC
GTCGTTGCCGTGGTGAAGCCGCATATTTATGTAATATCCTATTTGCATTC
CCTGCACCTGGTGGTCCGTTTGATATCCAGCATCCTGCTGATCGGACCAT
TCAATGCCCAGGGCCAGCAACTGTGCCAGGAGACCGATGTGCCGGAGGAT
TATATGAAACTGGCCAGGGACGATTGTTCGATATTAGTTCGCTGGCTAAT
CGCGATCGTTGATGAGCTGCGTCCGCTGATGGTGGAGAACAACGATTTGG
GGCATCTGCATGAGCGCCTGGTGCTTTTGGAGTCCATATGTGAGCTTATG
CAGCTCTTGCATGGCCATTTGGTTAAGTGTTACCAAGGCAAAAGTGGACC
ACAATGTAAGGCAAGCTTTCTAGACCAT

BO15989.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15728-RB 897 CG15728-PB 1..894 17..910 4470 100 Plus
CG15728-RA 897 CG15728-PA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15728-RB 1250 CG15728-RB 158..1051 17..910 4470 100 Plus
CG15728-RA 1140 CG15728-RA 70..963 17..910 4470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12627677..12628246 341..910 2850 100 Plus
X 23542271 X 12627419..12627612 147..340 970 100 Plus
X 23542271 X 12627233..12627364 17..148 660 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:49:40 has no hits.

BO15989.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:54 Download gff for BO15989.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..897 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:34 Download gff for BO15989.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 61..966 8..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:38 Download gff for BO15989.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 70..963 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:54 Download gff for BO15989.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..897 17..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:04 Download gff for BO15989.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 70..963 17..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:04 Download gff for BO15989.complete
Subject Subject Range Query Range Percent Splice Strand
X 12627233..12627364 17..148 100 -> Plus
X 12627421..12627612 149..340 100 -> Plus
X 12627677..12628246 341..912 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:38 Download gff for BO15989.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12521266..12521397 17..148 100 -> Plus
arm_X 12521454..12521645 149..340 100 -> Plus
arm_X 12521710..12522279 341..912 99   Plus

BO15989.pep Sequence

Translation from 16 to 928

> BO15989.pep
MAEYNMSHMVRPQGFSLEELRQTMSRSAIREQCYFIYATGNILEIISGFD
ELLNQEGIQFGADKLAAVYVCGLMVYLLHHEDTSATQVKRTLFLQKCFNY
MACSEESHIHQVCVHVLGLLDIQSSSTMLNLILGCRVASPLCTMASVVAN
CLLWAMLDHMSDLGLDLHRLRPANTLLLVVAVVKPHIYVISYLHSLHLVV
RLISSILLIGPFNAQGQQLCQETDVPEDYMKLARDDCSILVRWLIAIVDE
LRPLMVENNDLGHLHERLVLLESICELMQLLHGHLVKCYQGKSGPQCKAS
FLDH

BO15989.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15728-PB 298 CG15728-PB 1..298 1..298 1551 100 Plus
CG15728-PA 298 CG15728-PA 1..298 1..298 1551 100 Plus