Clone Sequence Records
BO15989.5prime Sequence
875 bp (770 high quality bases) assembled on 2006-06-02
> BO15989.5prime
GAAGTTATCAGTCGACATGGCAGAATACAACATGAGCCACATGGTGCGAC
CCCAGGGATTCAGTTTGGAAGAGCTGCGTCAGACTATGAGTCGATCGGCG
ATTCGGGAACAATGCTACTTTATTTATGCCACCGGCAATATTCTGGAGAT
TATATCTGGTTTTGATGAACTGCTCAACCAGGAGGGGATCCAATTCGGAG
CAGATAAACTGGCTGCGGTGTATGTATGCGGTTTGATGGTTTATCTACTC
CATCATGAGGACACGTCGGCCACCCAGGTGAAAAGAACTCTTTTCCTGCA
AAAGTGCTTCAATTATATGGCATGCTCCGAGGAAAGCCATATCCACCAGG
TATGCGTCCATGTCCTGGGTCTCTTGGATATCCAGAGTTCGAGCACAATG
CTCAACCTGATCCTCGGCTGCCGCGTGGCCAGTCCGCTGTGCACAATGGC
CAGCGTTGTGGCTAACTGTCTGCTCTGGGCCATGTTGGATCATATGTCGG
ACTTGGGCCTGGACTTGCACCGATTGCGTCCGGCTAACACACTGCTGCTC
GTCGTTGCCGTGGTGAAGCCGCATATTTATGTAATATCCTATTTGCATTC
CCTGCACCTGGTGGTCCGTTTGATATCCAGCATCCTGCTGATCGGACCAT
TCAATGCCCAGGGCCAGCAACTGTGCCAGGAGACCGATGTGCCGGAGGAT
TATATGAAACTGGCCAGGGACGATTGTTCGATATTAGTTCGCTGGCTAAT
CGCGATCGTTGATGAGCTGCGTCCGCTGATGGTGGAGAACAACGATTTGG
GGCATCTGCATGAGCGCCTGGTGCTTTTGGAGTCCATATGTGAGCTTATG
CAGCTCTTGCATGGCCCTTTGGTTA
BO15989.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15728-PA | 897 | CG15728-RA | 1..859 | 17..875 | 4270 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15728-RB | 1250 | CG15728-RB | 158..1016 | 17..875 | 4280 | 99.9 | Plus |
CG15728-RA | 1140 | CG15728-RA | 70..928 | 17..875 | 4280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12627677..12628211 | 341..875 | 2660 | 99.8 | Plus |
X | 23542271 | X | 12627419..12627612 | 147..340 | 970 | 100 | Plus |
X | 23542271 | X | 12627233..12627364 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:11:17 has no hits.
BO15989.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:43 Download gff for
BO15989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15728-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:51 Download gff for
BO15989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15728-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:52 Download gff for
BO15989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15728-RA | 61..927 | 8..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:57 Download gff for
BO15989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15728-RA | 61..927 | 8..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:57 Download gff for
BO15989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12627224..12627364 | 8..148 | 97 | -> | Plus |
X | 12627421..12627612 | 149..340 | 100 | -> | Plus |
X | 12627677..12628210 | 341..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:52 Download gff for
BO15989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12521257..12521397 | 8..148 | 97 | -> | Plus |
arm_X | 12521454..12521645 | 149..340 | 100 | -> | Plus |
arm_X | 12521710..12522243 | 341..874 | 99 | | Plus |
BO15989.complete Sequence
928 bp (928 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ638746
> BO15989.complete
GAAGTTATCAGTCGACATGGCAGAATACAACATGAGCCACATGGTGCGAC
CCCAGGGATTCAGTTTGGAAGAGCTGCGTCAGACTATGAGTCGATCGGCG
ATTCGGGAACAATGCTACTTTATTTATGCCACCGGCAATATTCTGGAGAT
TATATCTGGTTTTGATGAACTGCTCAACCAGGAGGGGATCCAATTCGGAG
CAGATAAACTGGCTGCGGTGTATGTATGCGGTTTGATGGTTTATCTACTC
CATCATGAGGACACGTCGGCCACCCAGGTGAAAAGAACTCTTTTCCTGCA
AAAGTGCTTCAATTATATGGCATGCTCCGAGGAAAGCCATATCCACCAGG
TATGCGTCCATGTCCTGGGTCTCTTGGATATCCAGAGTTCGAGCACAATG
CTCAACCTGATCCTCGGCTGCCGCGTGGCCAGTCCGCTGTGCACAATGGC
CAGCGTTGTGGCTAACTGTCTGCTCTGGGCCATGTTGGATCATATGTCGG
ACTTGGGCCTGGACTTGCACCGATTGCGTCCGGCTAACACACTGCTGCTC
GTCGTTGCCGTGGTGAAGCCGCATATTTATGTAATATCCTATTTGCATTC
CCTGCACCTGGTGGTCCGTTTGATATCCAGCATCCTGCTGATCGGACCAT
TCAATGCCCAGGGCCAGCAACTGTGCCAGGAGACCGATGTGCCGGAGGAT
TATATGAAACTGGCCAGGGACGATTGTTCGATATTAGTTCGCTGGCTAAT
CGCGATCGTTGATGAGCTGCGTCCGCTGATGGTGGAGAACAACGATTTGG
GGCATCTGCATGAGCGCCTGGTGCTTTTGGAGTCCATATGTGAGCTTATG
CAGCTCTTGCATGGCCATTTGGTTAAGTGTTACCAAGGCAAAAGTGGACC
ACAATGTAAGGCAAGCTTTCTAGACCAT
BO15989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15728-RB | 897 | CG15728-PB | 1..894 | 17..910 | 4470 | 100 | Plus |
CG15728-RA | 897 | CG15728-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15728-RB | 1250 | CG15728-RB | 158..1051 | 17..910 | 4470 | 100 | Plus |
CG15728-RA | 1140 | CG15728-RA | 70..963 | 17..910 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12627677..12628246 | 341..910 | 2850 | 100 | Plus |
X | 23542271 | X | 12627419..12627612 | 147..340 | 970 | 100 | Plus |
X | 23542271 | X | 12627233..12627364 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:49:40 has no hits.
BO15989.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:54 Download gff for
BO15989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15728-RA | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:34 Download gff for
BO15989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15728-RA | 61..966 | 8..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:38 Download gff for
BO15989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15728-RA | 70..963 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:54 Download gff for
BO15989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15728-RA | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:04 Download gff for
BO15989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15728-RA | 70..963 | 17..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:04 Download gff for
BO15989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12627233..12627364 | 17..148 | 100 | -> | Plus |
X | 12627421..12627612 | 149..340 | 100 | -> | Plus |
X | 12627677..12628246 | 341..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:38 Download gff for
BO15989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12521266..12521397 | 17..148 | 100 | -> | Plus |
arm_X | 12521454..12521645 | 149..340 | 100 | -> | Plus |
arm_X | 12521710..12522279 | 341..912 | 99 | | Plus |
BO15989.pep Sequence
Translation from 16 to 928
> BO15989.pep
MAEYNMSHMVRPQGFSLEELRQTMSRSAIREQCYFIYATGNILEIISGFD
ELLNQEGIQFGADKLAAVYVCGLMVYLLHHEDTSATQVKRTLFLQKCFNY
MACSEESHIHQVCVHVLGLLDIQSSSTMLNLILGCRVASPLCTMASVVAN
CLLWAMLDHMSDLGLDLHRLRPANTLLLVVAVVKPHIYVISYLHSLHLVV
RLISSILLIGPFNAQGQQLCQETDVPEDYMKLARDDCSILVRWLIAIVDE
LRPLMVENNDLGHLHERLVLLESICELMQLLHGHLVKCYQGKSGPQCKAS
FLDH
BO15989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15728-PB | 298 | CG15728-PB | 1..298 | 1..298 | 1551 | 100 | Plus |
CG15728-PA | 298 | CG15728-PA | 1..298 | 1..298 | 1551 | 100 | Plus |