Clone Sequence Records
BO15990.3prime Sequence
757 bp (728 high quality bases) assembled on 2006-06-02
> BO15990.3prime
ATGGTCTAGAAAGCTTGCGTCCACGTTGAGCTTTCTAAAGGAACCTTCTA
CTCCGAAAAGCCCCTCAAAATCGATTGGTTTTCCGGGACGCAGGCTCTCG
TCGGTGCCGAAGTTCACATTTTCCTGGAAGAAATCGGCGTACTCGTCCAA
CTTCTTCTCCATGGCGGCCACGATGTCCTGCGTGGTGCCATTCTCGCCGC
CGTATTCCTCGGGCAGATATTTCAGTGGAATCTGCTCCGTCAAGAGCCCC
ATTTTGTTGCCGTGCACAAATAGGCGAGACTGCATTTTCTTGGACATCAT
TGGCTTGAACATGTTGAACAGCTGCTCGAATCCGGTGATGGTGTTGATGA
AATGCTGTGCCTTCAGACGCAGTGGAAGTGCCTCCTCCGAGAAGACAGTG
AATTTCTTGGCCATCGACGGCGTCATCTGGAACAAGTGTGCGGCGGTGGC
ACCCTTCATGTCCATAATGAAAACTACTCCATTGACATTGGCGTAGTCGT
CCTCCAAAATGGCAATCTCCTGCATTGCCTGGGCCACTTGCATGCACTCC
AGCATTGTGTACTTCTCCACTGGCACCAATCCCATGCGCCAGATCCCGAT
GCGAGGTCCATTTTCATTCAGCGGAGTGGGCAGGTAGATGATGGCACCCG
TTTGATGAATCTCCCGGAACTTGCTATCCGTGGTGTTGGTAACTCGGAAA
TAGTCCGGATACTTGGTCTTCAGCGTGTAGTACTTATCTAACTTGGACTT
GGCCCGC
BO15990.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33514-PA | 936 | CG33514-RA | 195..933 | 757..19 | 3695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33514-RA | 1179 | CG33514-RA | 257..995 | 757..19 | 3695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4365859..4366487 | 647..19 | 3145 | 100 | Minus |
3L | 28110227 | 3L | 4365690..4365800 | 757..647 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:39:02 has no hits.
BO15990.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:43 Download gff for
BO15990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-PA | 195..936 | 18..757 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:53 Download gff for
BO15990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-PA | 195..936 | 18..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:50 Download gff for
BO15990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-RA | 257..1002 | 9..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:50 Download gff for
BO15990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-RA | 257..1002 | 9..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:50 Download gff for
BO15990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4365690..4365800 | 647..757 | 100 | -> | Minus |
3L | 4365860..4366494 | 9..646 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:50 Download gff for
BO15990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4365690..4365800 | 647..757 | 100 | -> | Minus |
arm_3L | 4365860..4366494 | 9..646 | 99 | | Minus |
BO15990.5prime Sequence
810 bp (710 high quality bases) assembled on 2006-06-02
> BO15990.5prime
GAAGTTATCAGTCGACATGTCACCGCAAATCCGTCCACTTACGCCAGAGC
TGCAAAAAGTTGCCAAGGAGCAGCTCAAGGAGGATCCCGAACGTCTCGAA
GCCGATCTGCAGGCGTTTAAGACATGGATCGAGCAGCAGCCGCATCTAAA
TCCCCGAATGGATGATCAGTTTCTGGTGGCTTTCTTGCGCGGCTGCAAGT
ACAGTTTGGAGCGGGCCAAGTCCAAGTTAGATAAGTACTACACGCTGAAG
ACCAAGTATCCGGACTATTTCCGAGTTACCAACACCACGGATAGCAAGTT
CCGGGAGATTCATCAAACGGGTGCCATCATCTACCTGCCCACTCCGCTGA
ATGAAAATGGACCTCGCATCGGGATCTGGCGCATGGGATTGGTGCCAGTG
GAGAAGTACACAATGCTGGAGTGCATGCAAGTGGCCCAGGCAATGCAGGA
GATTGCCATTTTGGAGGACGACTACGCCAATGTCAATGGAGTAGTTTTCA
TTATGGACATGAAGGGTGCCACCGCCGCACACTTGTTCCAGATGACGCCG
TCGATGGCCAAGAAATTCACTGTCTTCTCGGAGGAGGCACTTCCACTGCG
TCTGAAGGCACAGCATTTCATCAACACCATCACCGGATTCGAGCAGCTGT
TCAACATGTTCAAGCCAATGATGTCCAAGAAAATGCAGTCTCGCCTATTT
GTGCACGGCAACAAAATGGGGCTCTTGACGGAGCAGATTCCACTGAAATA
TCTGCCCGAGGAATACGGCGGCGAGAATGGCACCACGCAGGACATCGTGG
CCGCCATGGA
BO15990.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33514-PA | 936 | CG33514-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33514-RA | 1179 | CG33514-RA | 63..856 | 17..810 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4365859..4366348 | 321..810 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 4365496..4365800 | 17..321 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:11:11 has no hits.
BO15990.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:44 Download gff for
BO15990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:55 Download gff for
BO15990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:50 Download gff for
BO15990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-RA | 60..855 | 14..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:41 Download gff for
BO15990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-RA | 60..855 | 14..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:41 Download gff for
BO15990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4365493..4365800 | 14..321 | 99 | -> | Plus |
3L | 4365860..4366347 | 322..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:50 Download gff for
BO15990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4365493..4365800 | 14..321 | 99 | -> | Plus |
arm_3L | 4365860..4366347 | 322..809 | 100 | | Plus |
BO15990.complete Sequence
967 bp (967 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633657
> BO15990.complete
GAAGTTATCAGTCGACATGTCACCGCAAATCCGTCCACTTACGCCAGAGC
TGCAAAAAGTTGCCAAGGAGCAGCTCAAGGAGGATCCCGAACGTCTCGAA
GCCGATCTGCAGGCGTTTAAGACATGGATCGAGCAGCAGCCGCATCTAAA
TCCCCGAATGGATGATCAGTTTCTGGTGGCTTTCTTGCGCGGCTGCAAGT
ACAGTTTGGAGCGGGCCAAGTCCAAGTTAGATAAGTACTACACGCTGAAG
ACCAAGTATCCGGACTATTTCCGAGTTACCAACACCACGGATAGCAAGTT
CCGGGAGATTCATCAAACGGGTGCCATCATCTACCTGCCCACTCCGCTGA
ATGAAAATGGACCTCGCATCGGGATCTGGCGCATGGGATTGGTGCCAGTG
GAGAAGTACACAATGCTGGAGTGCATGCAAGTGGCCCAGGCAATGCAGGA
GATTGCCATTTTGGAGGACGACTACGCCAATGTCAATGGAGTAGTTTTCA
TTATGGACATGAAGGGTGCCACCGCCGCACACTTGTTCCAGATGACGCCG
TCGATGGCCAAGAAATTCACTGTCTTCTCGGAGGAGGCACTTCCACTGCG
TCTGAAGGCACAGCATTTCATCAACACCATCACCGGATTCGAGCAGCTGT
TCAACATGTTCAAGCCAATGATGTCCAAGAAAATGCAGTCTCGCCTATTT
GTGCACGGCAACAAAATGGGGCTCTTGACGGAGCAGATTCCACTGAAATA
TCTGCCCGAGGAATACGGCGGCGAGAATGGCACCACGCAGGACATCGTGG
CCGCCATGGAGAAGAAGTTGGACGAGTACGCCGATTTCTTCCAGGAAAAT
GTGAACTTCGGCACCGACGAGAGCCTGCGTCCCGGAAAACCAATCGATTT
TGAGGGGCTTTTCGGAGTAGAAGGTTCCTTTAGAAAGCTCAACGTGGACG
CAAGCTTTCTAGACCAT
BO15990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33514-RA | 936 | CG33514-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33514-RA | 1179 | CG33514-RA | 63..995 | 17..949 | 4665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4365859..4366487 | 321..949 | 3145 | 100 | Plus |
3L | 28110227 | 3L | 4365496..4365800 | 17..321 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:37:24 has no hits.
BO15990.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:24 Download gff for
BO15990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-RA | 1..936 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:19 Download gff for
BO15990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-RA | 1..940 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:47 Download gff for
BO15990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-RA | 63..995 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:24 Download gff for
BO15990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-RA | 1..940 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:02 Download gff for
BO15990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33514-RA | 63..995 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:02 Download gff for
BO15990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4365496..4365800 | 17..321 | 100 | -> | Plus |
3L | 4365860..4366487 | 322..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:47 Download gff for
BO15990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4365496..4365800 | 17..321 | 100 | -> | Plus |
arm_3L | 4365860..4366487 | 322..951 | 99 | | Plus |
BO15990.pep Sequence
Translation from 16 to 967
> BO15990.pep
MSPQIRPLTPELQKVAKEQLKEDPERLEADLQAFKTWIEQQPHLNPRMDD
QFLVAFLRGCKYSLERAKSKLDKYYTLKTKYPDYFRVTNTTDSKFREIHQ
TGAIIYLPTPLNENGPRIGIWRMGLVPVEKYTMLECMQVAQAMQEIAILE
DDYANVNGVVFIMDMKGATAAHLFQMTPSMAKKFTVFSEEALPLRLKAQH
FINTITGFEQLFNMFKPMMSKKMQSRLFVHGNKMGLLTEQIPLKYLPEEY
GGENGTTQDIVAAMEKKLDEYADFFQENVNFGTDESLRPGKPIDFEGLFG
VEGSFRKLNVDASFLDH
BO15990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33514-PA | 311 | CG33514-PA | 1..311 | 1..311 | 1626 | 100 | Plus |
CG33966-PA | 310 | CG33966-PA | 2..310 | 3..311 | 916 | 55.3 | Plus |
CG12926-PA | 313 | CG12926-PA | 6..313 | 2..311 | 706 | 45.2 | Plus |
CG30339-PA | 308 | CG30339-PA | 4..308 | 5..311 | 644 | 42.3 | Plus |
CG31636-PB | 313 | CG31636-PB | 4..313 | 5..311 | 612 | 40.5 | Plus |