Clone BO15990 Report

Search the DGRC for BO15990

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:159
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG33514-RA
Protein status:BO15990.pep: validated full length
Sequenced Size:967

Clone Sequence Records

BO15990.3prime Sequence

757 bp (728 high quality bases) assembled on 2006-06-02

> BO15990.3prime
ATGGTCTAGAAAGCTTGCGTCCACGTTGAGCTTTCTAAAGGAACCTTCTA
CTCCGAAAAGCCCCTCAAAATCGATTGGTTTTCCGGGACGCAGGCTCTCG
TCGGTGCCGAAGTTCACATTTTCCTGGAAGAAATCGGCGTACTCGTCCAA
CTTCTTCTCCATGGCGGCCACGATGTCCTGCGTGGTGCCATTCTCGCCGC
CGTATTCCTCGGGCAGATATTTCAGTGGAATCTGCTCCGTCAAGAGCCCC
ATTTTGTTGCCGTGCACAAATAGGCGAGACTGCATTTTCTTGGACATCAT
TGGCTTGAACATGTTGAACAGCTGCTCGAATCCGGTGATGGTGTTGATGA
AATGCTGTGCCTTCAGACGCAGTGGAAGTGCCTCCTCCGAGAAGACAGTG
AATTTCTTGGCCATCGACGGCGTCATCTGGAACAAGTGTGCGGCGGTGGC
ACCCTTCATGTCCATAATGAAAACTACTCCATTGACATTGGCGTAGTCGT
CCTCCAAAATGGCAATCTCCTGCATTGCCTGGGCCACTTGCATGCACTCC
AGCATTGTGTACTTCTCCACTGGCACCAATCCCATGCGCCAGATCCCGAT
GCGAGGTCCATTTTCATTCAGCGGAGTGGGCAGGTAGATGATGGCACCCG
TTTGATGAATCTCCCGGAACTTGCTATCCGTGGTGTTGGTAACTCGGAAA
TAGTCCGGATACTTGGTCTTCAGCGTGTAGTACTTATCTAACTTGGACTT
GGCCCGC

BO15990.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-PA 936 CG33514-RA 195..933 757..19 3695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-RA 1179 CG33514-RA 257..995 757..19 3695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4365859..4366487 647..19 3145 100 Minus
3L 28110227 3L 4365690..4365800 757..647 555 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:39:02 has no hits.

BO15990.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:43 Download gff for BO15990.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33514-PA 195..936 18..757 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:53 Download gff for BO15990.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33514-PA 195..936 18..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:50 Download gff for BO15990.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 257..1002 9..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:50 Download gff for BO15990.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 257..1002 9..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:50 Download gff for BO15990.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4365690..4365800 647..757 100 -> Minus
3L 4365860..4366494 9..646 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:50 Download gff for BO15990.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4365690..4365800 647..757 100 -> Minus
arm_3L 4365860..4366494 9..646 99   Minus

BO15990.5prime Sequence

810 bp (710 high quality bases) assembled on 2006-06-02

> BO15990.5prime
GAAGTTATCAGTCGACATGTCACCGCAAATCCGTCCACTTACGCCAGAGC
TGCAAAAAGTTGCCAAGGAGCAGCTCAAGGAGGATCCCGAACGTCTCGAA
GCCGATCTGCAGGCGTTTAAGACATGGATCGAGCAGCAGCCGCATCTAAA
TCCCCGAATGGATGATCAGTTTCTGGTGGCTTTCTTGCGCGGCTGCAAGT
ACAGTTTGGAGCGGGCCAAGTCCAAGTTAGATAAGTACTACACGCTGAAG
ACCAAGTATCCGGACTATTTCCGAGTTACCAACACCACGGATAGCAAGTT
CCGGGAGATTCATCAAACGGGTGCCATCATCTACCTGCCCACTCCGCTGA
ATGAAAATGGACCTCGCATCGGGATCTGGCGCATGGGATTGGTGCCAGTG
GAGAAGTACACAATGCTGGAGTGCATGCAAGTGGCCCAGGCAATGCAGGA
GATTGCCATTTTGGAGGACGACTACGCCAATGTCAATGGAGTAGTTTTCA
TTATGGACATGAAGGGTGCCACCGCCGCACACTTGTTCCAGATGACGCCG
TCGATGGCCAAGAAATTCACTGTCTTCTCGGAGGAGGCACTTCCACTGCG
TCTGAAGGCACAGCATTTCATCAACACCATCACCGGATTCGAGCAGCTGT
TCAACATGTTCAAGCCAATGATGTCCAAGAAAATGCAGTCTCGCCTATTT
GTGCACGGCAACAAAATGGGGCTCTTGACGGAGCAGATTCCACTGAAATA
TCTGCCCGAGGAATACGGCGGCGAGAATGGCACCACGCAGGACATCGTGG
CCGCCATGGA

BO15990.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-PA 936 CG33514-RA 1..794 17..810 3970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-RA 1179 CG33514-RA 63..856 17..810 3970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4365859..4366348 321..810 2450 100 Plus
3L 28110227 3L 4365496..4365800 17..321 1525 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:11:11 has no hits.

BO15990.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:57:44 Download gff for BO15990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33514-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:03:55 Download gff for BO15990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33514-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:50 Download gff for BO15990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 60..855 14..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:41 Download gff for BO15990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 60..855 14..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:41 Download gff for BO15990.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4365493..4365800 14..321 99 -> Plus
3L 4365860..4366347 322..809 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:50 Download gff for BO15990.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4365493..4365800 14..321 99 -> Plus
arm_3L 4365860..4366347 322..809 100   Plus

BO15990.complete Sequence

967 bp (967 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633657

> BO15990.complete
GAAGTTATCAGTCGACATGTCACCGCAAATCCGTCCACTTACGCCAGAGC
TGCAAAAAGTTGCCAAGGAGCAGCTCAAGGAGGATCCCGAACGTCTCGAA
GCCGATCTGCAGGCGTTTAAGACATGGATCGAGCAGCAGCCGCATCTAAA
TCCCCGAATGGATGATCAGTTTCTGGTGGCTTTCTTGCGCGGCTGCAAGT
ACAGTTTGGAGCGGGCCAAGTCCAAGTTAGATAAGTACTACACGCTGAAG
ACCAAGTATCCGGACTATTTCCGAGTTACCAACACCACGGATAGCAAGTT
CCGGGAGATTCATCAAACGGGTGCCATCATCTACCTGCCCACTCCGCTGA
ATGAAAATGGACCTCGCATCGGGATCTGGCGCATGGGATTGGTGCCAGTG
GAGAAGTACACAATGCTGGAGTGCATGCAAGTGGCCCAGGCAATGCAGGA
GATTGCCATTTTGGAGGACGACTACGCCAATGTCAATGGAGTAGTTTTCA
TTATGGACATGAAGGGTGCCACCGCCGCACACTTGTTCCAGATGACGCCG
TCGATGGCCAAGAAATTCACTGTCTTCTCGGAGGAGGCACTTCCACTGCG
TCTGAAGGCACAGCATTTCATCAACACCATCACCGGATTCGAGCAGCTGT
TCAACATGTTCAAGCCAATGATGTCCAAGAAAATGCAGTCTCGCCTATTT
GTGCACGGCAACAAAATGGGGCTCTTGACGGAGCAGATTCCACTGAAATA
TCTGCCCGAGGAATACGGCGGCGAGAATGGCACCACGCAGGACATCGTGG
CCGCCATGGAGAAGAAGTTGGACGAGTACGCCGATTTCTTCCAGGAAAAT
GTGAACTTCGGCACCGACGAGAGCCTGCGTCCCGGAAAACCAATCGATTT
TGAGGGGCTTTTCGGAGTAGAAGGTTCCTTTAGAAAGCTCAACGTGGACG
CAAGCTTTCTAGACCAT

BO15990.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-RA 936 CG33514-PA 1..933 17..949 4665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-RA 1179 CG33514-RA 63..995 17..949 4665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4365859..4366487 321..949 3145 100 Plus
3L 28110227 3L 4365496..4365800 17..321 1525 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:37:24 has no hits.

BO15990.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:24 Download gff for BO15990.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..936 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:19 Download gff for BO15990.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..940 17..959 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:47 Download gff for BO15990.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 63..995 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:24 Download gff for BO15990.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..940 17..959 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:02 Download gff for BO15990.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 63..995 17..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:02 Download gff for BO15990.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4365496..4365800 17..321 100 -> Plus
3L 4365860..4366487 322..951 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:47 Download gff for BO15990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4365496..4365800 17..321 100 -> Plus
arm_3L 4365860..4366487 322..951 99   Plus

BO15990.pep Sequence

Translation from 16 to 967

> BO15990.pep
MSPQIRPLTPELQKVAKEQLKEDPERLEADLQAFKTWIEQQPHLNPRMDD
QFLVAFLRGCKYSLERAKSKLDKYYTLKTKYPDYFRVTNTTDSKFREIHQ
TGAIIYLPTPLNENGPRIGIWRMGLVPVEKYTMLECMQVAQAMQEIAILE
DDYANVNGVVFIMDMKGATAAHLFQMTPSMAKKFTVFSEEALPLRLKAQH
FINTITGFEQLFNMFKPMMSKKMQSRLFVHGNKMGLLTEQIPLKYLPEEY
GGENGTTQDIVAAMEKKLDEYADFFQENVNFGTDESLRPGKPIDFEGLFG
VEGSFRKLNVDASFLDH

BO15990.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-PA 311 CG33514-PA 1..311 1..311 1626 100 Plus
CG33966-PA 310 CG33966-PA 2..310 3..311 916 55.3 Plus
CG12926-PA 313 CG12926-PA 6..313 2..311 706 45.2 Plus
CG30339-PA 308 CG30339-PA 4..308 5..311 644 42.3 Plus
CG31636-PB 313 CG31636-PB 4..313 5..311 612 40.5 Plus