BO15996.complete Sequence
1147 bp (1147 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ638747
> BO15996.complete
GAAGTTATCAGTCGACATGGCATTTACCAGCAGCTCATCGCCCGCTTGGG
ATTATCGAAGCTCCCCGGAAGCGTTGGGTGTCGTCCCGTTCCTGTGGCAG
CACCAGAACGCCACGGAAACGCCAACGGAAATAACCCTCCAGGCGACCAG
TTTCGGTGCCGGCCATCTGCTGTGGCTAGCCATCAATGCCTTCTTGTTTG
TCCTTATCCTGGGCGGCAATATTCTGACCATTGTGGCGGTGCGCACCTGC
CGCCACCTGCGATCGGTCATCTCCAATCTGTTCATCCTGTCGCTGGCCGT
CTCCGACTTCTGTGTGGGACTGGCACTGCCCTATCATCTGGTATTTTACA
TGGGCTCGGACATTGGCGCCATGAGAGGTCCCTGCCTGCTGCGCTTCTTC
CTGCTCATCTGCGCCTGCTGCGTGTCCATGTTGACTCTGATCTCGATTGC
GGTGGATCGGTATATAGCAGTCGTCTATGCTCTGCACTATAGAAGATACA
TGACCCGTCGAGTGGCATATAGCATCATCATATTCAATTGGTGCTTGGGT
GCATTGGTGGCTCTGCTGCCAGTGTTCTGGAATCGATGGCCGGATGCACA
GGCGTGCGAATTCGACGAAGTTCTCGCGCCTGGTTACATTGCCGGAGTGA
TAACGCCGGGTTTTGTGATCATCTGGATCTGTATGTTCCTCGTCTACTGG
CGCATCATGCGCGAGGCATCCAAGCAGGCGCTGCGATTGCGACAGTCGGT
GGTCTACAACACGGACGAGGCCACCACCATGCGAAATCTGCTGCTCCATC
CAGACTGGAAGAGCGTCCAGATTGTGGTCTTCATCATGGGCTGCTTCACG
CTCTGTTGGCTACCGTACTTCTGTGTGGCCATTGCCCAGCTATTTAGCAT
CTGCCAGAGCAGCTCGATGATCTACAAGACGACGTTCTCTCTGGCCATTG
CCAACTCTGCTCTCAATCCGATTATCTACTCGTGGAAGAACTCTGGCTTT
CGGCGAGCCTTTGTCCAAACATTATGCTGCCGAACGGCGAGGCAGTGCGA
GGATCAATTGCCGGCGGACAGCAAGCACCGCATGGAGGCCACATCCTCAT
CTCAGGAGATCAAACCGAAGGCCACTCAGGCAAGCTTTCTAGACCAT
BO15996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12796-RA | 1116 | CG12796-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12796-RA | 1218 | CG12796-RA | 23..1136 | 16..1129 | 5570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6831479..6832114 | 1129..494 | 3180 | 100 | Minus |
| X | 23542271 | X | 6832183..6832662 | 495..16 | 2400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:34:34 has no hits.
BO15996.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:36 Download gff for
BO15996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12796-RA | 1..1116 | 17..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:09 Download gff for
BO15996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12796-RA | 1..1116 | 17..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:15 Download gff for
BO15996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12796-RA | 24..1136 | 17..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:37 Download gff for
BO15996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12796-RA | 1..1116 | 17..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:06 Download gff for
BO15996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12796-RA | 24..1136 | 17..1131 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:06 Download gff for
BO15996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6832183..6832661 | 17..495 | 100 | | Minus |
| X | 6831476..6832112 | 496..1131 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:15 Download gff for
BO15996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6725509..6726145 | 496..1131 | 99 | <- | Minus |
| arm_X | 6726216..6726694 | 17..495 | 100 | | Minus |
BO15996.pep Sequence
Translation from 16 to 1147
> BO15996.pep
MAFTSSSSPAWDYRSSPEALGVVPFLWQHQNATETPTEITLQATSFGAGH
LLWLAINAFLFVLILGGNILTIVAVRTCRHLRSVISNLFILSLAVSDFCV
GLALPYHLVFYMGSDIGAMRGPCLLRFFLLICACCVSMLTLISIAVDRYI
AVVYALHYRRYMTRRVAYSIIIFNWCLGALVALLPVFWNRWPDAQACEFD
EVLAPGYIAGVITPGFVIIWICMFLVYWRIMREASKQALRLRQSVVYNTD
EATTMRNLLLHPDWKSVQIVVFIMGCFTLCWLPYFCVAIAQLFSICQSSS
MIYKTTFSLAIANSALNPIIYSWKNSGFRRAFVQTLCCRTARQCEDQLPA
DSKHRMEATSSSQEIKPKATQASFLDH
BO15996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12796-PA | 371 | CG12796-PA | 1..371 | 1..371 | 1957 | 100 | Plus |
| Octbeta1R-PB | 421 | CG6919-PB | 100..419 | 47..336 | 272 | 29.2 | Plus |
| Octbeta1R-PC | 428 | CG6919-PC | 100..419 | 47..336 | 272 | 29.2 | Plus |
| Octbeta1R-PE | 508 | CG6919-PE | 100..419 | 47..336 | 272 | 29.2 | Plus |
| Octbeta1R-PA | 508 | CG6919-PA | 100..419 | 47..336 | 272 | 29.2 | Plus |
