Clone Sequence Records
BO16001.5prime Sequence
278 bp (278 high quality bases) assembled on 2006-06-16
> BO16001.5prime
GAAGTTATCAGTCGACATGGCCGATTTCAACGCTATCCTCGAGAAGACCA
AGGCCTTCAGCAAGAAGCCCCCAACGGAGGTGTACCTGGAGTTCTATGGC
CTGTACAAGCAGTTCCAGGAGGGCGACATTAACATCGAGAAGCCCGCTGA
TGCCGAGGGTGCCGCTAAGTACGATGCCTGGCTGAGCCGCAAGGGACTGT
CCGTCGATGACGCCAAGGCCGCCTACGTCGCCCTGTACGAGAAGTACAAC
CCCATCTACGGAGCAAGCTTTCTAGACC
BO16001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5804-PA | 249 | CG5804-RA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5804-RA | 337 | CG5804-RA | 32..277 | 17..262 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8788204..8788440 | 262..26 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:39:02 has no hits.
BO16001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:27 Download gff for
BO16001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-PA | 1..249 | 17..266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 01:36:39 Download gff for
BO16001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-RA | 26..287 | 10..275 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:32 Download gff for
BO16001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-RA | 26..287 | 10..275 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:32 Download gff for
BO16001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8788194..8788440 | 26..275 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 01:36:39 Download gff for
BO16001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8781294..8781540 | 26..275 | 98 | | Minus |
BO16001.3prime Sequence
278 bp (278 high quality bases) assembled on 2006-06-16
> BO16001.3prime
ATGGTCTAGAAAGCTTGCTCCGTAGATGGGGTTGTACTTCTCGTACAGGG
CGACGTAGGCGGCCTTGGCGTCATCGACGGACAGTCCCTTGCGGCTCAGC
CAGGCATCGTACTTAGCGGCACCCTCGGCATCAGCGGGCTTCTCGATGTT
AATGTCGCCCTCCTGGAACTGCTTGTACAGGCCATAGAACTCCAGGTACA
CCTCCGTTGGGGGCTTCTTGCTGAAGGCCTTGGTCTTCTCGAGGATAGCG
TTGAAATCGGCCATGTCGACTGATAACT
BO16001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5804-PA | 249 | CG5804-RA | 1..246 | 264..19 | 1230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5804-RA | 337 | CG5804-RA | 32..277 | 264..19 | 1230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8788204..8788440 | 19..255 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:12:30 has no hits.
BO16001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:26 Download gff for
BO16001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-PA | 1..249 | 15..264 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:08:58 Download gff for
BO16001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-RA | 26..287 | 6..271 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:28 Download gff for
BO16001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-RA | 26..287 | 6..271 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:28 Download gff for
BO16001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8788200..8788440 | 13..255 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:08:58 Download gff for
BO16001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8781300..8781540 | 13..255 | 98 | | Plus |
BO16001.complete Sequence
280 bp assembled on 2008-08-15
GenBank Submission: FJ633658
> BO16001.complete
GAAGTTATCAGTCGACATGGCCGATTTCAACGCTATCCTCGAGAAGACCA
AGGCCTTCAGCAAGAAGCCCCCAACGGAGGTGTACCTGGAGTTCTATGGC
CTGTACAAGCAGTTCCAGGAGGGCGACATTAACATCGAGAAGCCCGCTGA
TGCCGAGGGTGCCGCTAAGTACGATGCCTGGCTGAGCCGCAAGGGACTGT
CCGTCGATGACGCCAAGGCCGCCTACGTCGCCCTGTACGAGAAGTACAAC
CCCATCTACGGAGCAAGCTTTCTAGACCAT
BO16001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5804-RA | 249 | CG5804-PA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5804-RA | 337 | CG5804-RA | 32..277 | 17..262 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8788204..8788440 | 262..26 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:38:50 has no hits.
BO16001.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:18 Download gff for
BO16001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-RA | 21..282 | 10..275 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:52 Download gff for
BO16001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-RA | 32..277 | 17..264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:35 Download gff for
BO16001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-RA | 27..272 | 17..264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:27 Download gff for
BO16001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5804-RA | 32..277 | 17..264 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:27 Download gff for
BO16001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8788202..8788440 | 26..264 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:52 Download gff for
BO16001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8781302..8781540 | 26..264 | 99 | | Minus |
BO16001.pep Sequence
Translation from 16 to 280
> BO16001.pep
MADFNAILEKTKAFSKKPPTEVYLEFYGLYKQFQEGDINIEKPADAEGAA
KYDAWLSRKGLSVDDAKAAYVALYEKYNPIYGASFLDH
BO16001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5804-PA | 82 | CG5804-PA | 1..82 | 1..82 | 430 | 100 | Plus |
CG15829-PB | 82 | CG15829-PB | 1..81 | 1..81 | 225 | 53.1 | Plus |
CG15829-PA | 82 | CG15829-PA | 1..81 | 1..81 | 225 | 53.1 | Plus |
CG8629-PA | 84 | CG8629-PA | 1..83 | 1..81 | 211 | 53 | Plus |
CG8628-PA | 84 | CG8628-PA | 1..83 | 1..81 | 205 | 51.8 | Plus |