Clone Sequence Records
BO16003.3prime Sequence
284 bp (284 high quality bases) assembled on 2006-06-16
> BO16003.3prime
ATGGTCTAGAAAGCTTGCGGCGTACTTGGGGGCATACTTCTCGTACACCT
TCACGTAGGCCTCCTTGGCGGCATCCTTGGAGAGACCCTTGTGGGCGTTC
CAGGCCTCGTACATGGCCTTCTTCTTGAGATCCAGAATGCCGGGCTTGTC
GATGTTCACATCACCAACGGTAGCCTGCTTGAAGAGACCGTAGAACTCCA
GGAACTCGGAGTCGGTGGGCTTCTTGGAGAAGTTCTTGGCGAGTTCGGCG
GCTTCCTCAAAACTGACCATGTCGACTGATAACT
BO16003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8629-PA | 255 | CG8629-RA | 1..252 | 270..19 | 1260 | 100 | Minus |
CG8628-PA | 255 | CG8628-RA | 13..252 | 258..19 | 550 | 89.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 04:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8629-RA | 352 | CG8629-RA | 36..287 | 270..19 | 1260 | 100 | Minus |
CG8628-RA | 429 | CG8628-RA | 71..310 | 258..19 | 810 | 89.2 | Minus |
CG8628-RB | 408 | CG8628-RB | 50..289 | 258..19 | 810 | 89.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 04:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7127978..7128229 | 19..270 | 1260 | 100 | Plus |
3L | 28110227 | 3L | 7131147..7131386 | 258..19 | 810 | 89.2 | Minus |
Blast to na_te.dros performed on 2015-02-03 04:42:38 has no hits.
BO16003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:28 Download gff for
BO16003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-PA | 1..255 | 15..270 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:11:01 Download gff for
BO16003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-RA | 36..291 | 14..270 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:24:25 Download gff for
BO16003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-RA | 36..291 | 14..270 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:24:25 Download gff for
BO16003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7127974..7128229 | 14..270 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:11:01 Download gff for
BO16003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7121074..7121329 | 14..270 | 99 | | Plus |
BO16003.5prime Sequence
284 bp (284 high quality bases) assembled on 2006-06-16
> BO16003.5prime
GAAGTTATCAGTCGACATGGTCAGTTTTGAGGAAGCCGCCGAACTCGCCA
AGAACTTCTCCAAGAAGCCCACCGACTCCGAGTTCCTGGAGTTCTACGGT
CTCTTCAAGCAGGCTACCGTTGGTGATGTGAACATCGACAAGCCCGGCAT
TCTGGATCTCAAGAAGAAGGCCATGTACGAGGCCTGGAACGCCCACAAGG
GTCTCTCCAAGGATGCCGCCAAGGAGGCCTACGTGAAGGTGTACGAGAAG
TATGCCCCCAAGTACGCCGCAAGCTTTCTAGACC
BO16003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8629-PA | 255 | CG8629-RA | 1..252 | 17..268 | 1260 | 100 | Plus |
CG8628-PA | 255 | CG8628-RA | 13..252 | 29..268 | 550 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8629-RA | 352 | CG8629-RA | 36..287 | 17..268 | 1260 | 100 | Plus |
CG8628-RA | 429 | CG8628-RA | 71..310 | 29..268 | 810 | 89.2 | Plus |
CG8628-RB | 408 | CG8628-RB | 50..289 | 29..268 | 810 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7127978..7128229 | 268..17 | 1260 | 100 | Minus |
3L | 28110227 | 3L | 7131147..7131386 | 29..268 | 810 | 89.2 | Plus |
Blast to na_te.dros performed on 2015-01-31 06:30:28 has no hits.
BO16003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:28 Download gff for
BO16003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-PA | 1..255 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:09:13 Download gff for
BO16003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-RA | 36..291 | 17..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:41:36 Download gff for
BO16003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-RA | 36..291 | 17..273 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:41:36 Download gff for
BO16003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7127974..7128229 | 17..273 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:09:13 Download gff for
BO16003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7121074..7121329 | 17..273 | 99 | | Minus |
BO16003.complete Sequence
286 bp assembled on 2008-08-15
GenBank Submission: FJ633659
> BO16003.complete
GAAGTTATCAGTCGACATGGTCAGTTTTGAGGAAGCCGCCGAACTCGCCA
AGAACTTCTCCAAGAAGCCCACCGACTCCGAGTTCCTGGAGTTCTACGGT
CTCTTCAAGCAGGCTACCGTTGGTGATGTGAACATCGACAAGCCCGGCAT
TCTGGATCTCAAGAAGAAGGCCATGTACGAGGCCTGGAACGCCCACAAGG
GTCTCTCCAAGGATGCCGCCAAGGAGGCCTACGTGAAGGTGTACGAGAAG
TATGCCCCCAAGTACGCCGCAAGCTTTCTAGACCAT
BO16003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8629-RA | 255 | CG8629-PA | 1..252 | 17..268 | 1260 | 100 | Plus |
CG8628-RA | 255 | CG8628-PA | 13..252 | 29..268 | 810 | 89.2 | Plus |
CG8628-RB | 255 | CG8628-PB | 13..252 | 29..268 | 810 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8629-RA | 352 | CG8629-RA | 36..287 | 17..268 | 1260 | 100 | Plus |
CG8628-RA | 429 | CG8628-RA | 71..310 | 29..268 | 810 | 89.2 | Plus |
CG8628-RB | 408 | CG8628-RB | 50..289 | 29..268 | 810 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7127978..7128229 | 268..17 | 1260 | 100 | Minus |
3L | 28110227 | 3L | 7131147..7131386 | 29..268 | 810 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:16:41 has no hits.
BO16003.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:13:20 Download gff for
BO16003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-RA | 32..287 | 17..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:39 Download gff for
BO16003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-RA | 36..287 | 17..270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:57 Download gff for
BO16003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-RA | 32..283 | 17..270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:31 Download gff for
BO16003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8629-RA | 36..287 | 17..270 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:31 Download gff for
BO16003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7127976..7128229 | 17..270 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:39 Download gff for
BO16003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7121076..7121329 | 17..270 | 99 | | Minus |
BO16003.pep Sequence
Translation from 16 to 286
> BO16003.pep
MVSFEEAAELAKNFSKKPTDSEFLEFYGLFKQATVGDVNIDKPGILDLKK
KAMYEAWNAHKGLSKDAAKEAYVKVYEKYAPKYAASFLDH
BO16003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8629-PA | 84 | CG8629-PA | 1..84 | 1..84 | 435 | 100 | Plus |
CG8628-PA | 84 | CG8628-PA | 1..84 | 1..84 | 366 | 83.3 | Plus |
CG8628-PB | 84 | CG8628-PB | 1..84 | 1..84 | 366 | 83.3 | Plus |
CG15829-PB | 82 | CG15829-PB | 1..81 | 1..83 | 240 | 56.6 | Plus |
CG15829-PA | 82 | CG15829-PA | 1..81 | 1..83 | 240 | 56.6 | Plus |