Clone BO16004 Report

Search the DGRC for BO16004

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG16712-RA
Protein status:BO16004.pep: Imported from assembly
Sequenced Size:280

Clone Sequence Records

BO16004.5prime Sequence

278 bp (278 high quality bases) assembled on 2006-06-16

> BO16004.5prime
GAAGTTATCAGTCGACATGAAATTCATTGCTGCCGTCTGTTTGATGTTCG
CCCTGGTGGCTGTGGCCCTCGGCCTCAAGGATCCTATCTGTGGACTGCCC
GCTGGTATTGATGGCAATGGTCTCATCAAGTGTGCCGCTTTTATACCCAG
CTTCAGTTATCATCCCGAAACCAATTCGTGTGAAAAGTTCATCTACGGCG
GATGCGGCGGCAATGAGAACCGATTTGGAACCCAGGAGCTCTGCGAACAA
AAGTGCAAGGAAGCAAGCTTTCTAGACC

BO16004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-PA 249 CG16712-RA 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-RB 381 CG16712-RB 61..306 17..262 1230 100 Plus
CG16712-RA 359 CG16712-RA 61..306 17..262 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3696293..3696471 262..84 895 100 Minus
2L 23513712 2L 3696532..3696598 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:39:34 has no hits.

BO16004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:29 Download gff for BO16004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-PA 1..249 17..266 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 01:36:48 Download gff for BO16004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 55..313 7..271 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:07 Download gff for BO16004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 55..313 7..271 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:07 Download gff for BO16004.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3696532..3696604 7..83 94   Minus
2L 3696294..3696471 84..261 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 01:36:48 Download gff for BO16004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3696294..3696471 84..261 100 <- Minus
arm_2L 3696532..3696604 7..83 94   Minus

BO16004.3prime Sequence

278 bp (278 high quality bases) assembled on 2006-06-16

> BO16004.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGCACTTTTGTTCGCAGAGCTCCTGGG
TTCCAAATCGGTTCTCATTGCCGCCGCATCCGCCGTAGATGAACTTTTCA
CACGAATTGGTTTCGGGATGATAACTGAAGCTGGGTATAAAAGCGGCACA
CTTGATGAGACCATTGCCATCAATACCAGCGGGCAGTCCACAGATAGGAT
CCTTGAGGCCGAGGGCCACAGCCACCAGGGCGAACATCAAACAGACGGCA
GCAATGAATTTCATGTCGACTGATAACT

BO16004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-PA 249 CG16712-RA 1..246 264..19 1230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-RB 381 CG16712-RB 61..306 264..19 1230 100 Minus
CG16712-RA 359 CG16712-RA 61..306 264..19 1230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3696293..3696471 19..197 895 100 Plus
2L 23513712 2L 3696532..3696598 198..264 335 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:12:21 has no hits.

BO16004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:29 Download gff for BO16004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-PA 1..249 15..264 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:40 Download gff for BO16004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 55..313 10..274 96   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:42 Download gff for BO16004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 55..313 10..274 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:42 Download gff for BO16004.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3696294..3696471 20..197 100 <- Plus
2L 3696532..3696604 198..274 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:40 Download gff for BO16004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3696294..3696471 20..197 100 <- Plus
arm_2L 3696532..3696604 198..274 94   Plus

BO16004.complete Sequence

280 bp assembled on 2008-08-15

GenBank Submission: FJ633660

> BO16004.complete
GAAGTTATCAGTCGACATGAAATTCATTGCTGCCGTCTGTTTGATGTTCG
CCCTGGTGGCTGTGGCCCTCGGCCTCAAGGATCCTATCTGTGGACTGCCC
GCTGGTATTGATGGCAATGGTCTCATCAAGTGTGCCGCTTTTATACCCAG
CTTCAGTTATCATCCCGAAACCAATTCGTGTGAAAAGTTCATCTACGGCG
GATGCGGCGGCAATGAGAACCGATTTGGAACCCAGGAGCTCTGCGAACAA
AAGTGCAAGGAAGCAAGCTTTCTAGACCAT

BO16004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-RB 249 CG16712-PB 1..246 17..262 1230 100 Plus
CG16712-RA 249 CG16712-PA 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-RB 381 CG16712-RB 61..306 17..262 1230 100 Plus
CG16712-RA 359 CG16712-RA 61..306 17..262 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3696293..3696471 262..84 895 100 Minus
2L 23513712 2L 3696532..3696598 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:19:46 has no hits.

BO16004.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:46 Download gff for BO16004.complete
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 58..316 7..271 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:31 Download gff for BO16004.complete
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 61..306 17..264 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:15 Download gff for BO16004.complete
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 64..309 17..264 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:02 Download gff for BO16004.complete
Subject Subject Range Query Range Percent Splice Strand
CG16712-RA 61..306 17..264 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:02 Download gff for BO16004.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3696291..3696471 84..264 98 <- Minus
2L 3696532..3696598 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:31 Download gff for BO16004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3696291..3696471 84..264 98 <- Minus
arm_2L 3696532..3696598 17..83 100   Minus

BO16004.pep Sequence

Translation from 16 to 280

> BO16004.pep
MKFIAAVCLMFALVAVALGLKDPICGLPAGIDGNGLIKCAAFIPSFSYHP
ETNSCEKFIYGGCGGNENRFGTQELCEQKCKEASFLDH

BO16004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG16712-PB 82 CG16712-PB 1..82 1..82 448 100 Plus
CG16712-PA 82 CG16712-PA 1..82 1..82 448 100 Plus
CG16713-PA 82 CG16713-PA 1..80 1..80 253 56.2 Plus
CG43165-PA 95 CG43165-PA 1..81 1..81 244 53.1 Plus
Acp24A4-PC 78 CG31779-PC 1..78 1..82 184 46.3 Plus