Clone Sequence Records
BO16004.5prime Sequence
278 bp (278 high quality bases) assembled on 2006-06-16
> BO16004.5prime
GAAGTTATCAGTCGACATGAAATTCATTGCTGCCGTCTGTTTGATGTTCG
CCCTGGTGGCTGTGGCCCTCGGCCTCAAGGATCCTATCTGTGGACTGCCC
GCTGGTATTGATGGCAATGGTCTCATCAAGTGTGCCGCTTTTATACCCAG
CTTCAGTTATCATCCCGAAACCAATTCGTGTGAAAAGTTCATCTACGGCG
GATGCGGCGGCAATGAGAACCGATTTGGAACCCAGGAGCTCTGCGAACAA
AAGTGCAAGGAAGCAAGCTTTCTAGACC
BO16004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-PA | 249 | CG16712-RA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-RB | 381 | CG16712-RB | 61..306 | 17..262 | 1230 | 100 | Plus |
CG16712-RA | 359 | CG16712-RA | 61..306 | 17..262 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3696293..3696471 | 262..84 | 895 | 100 | Minus |
2L | 23513712 | 2L | 3696532..3696598 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:39:34 has no hits.
BO16004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:29 Download gff for
BO16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-PA | 1..249 | 17..266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 01:36:48 Download gff for
BO16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 55..313 | 7..271 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:07 Download gff for
BO16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 55..313 | 7..271 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:07 Download gff for
BO16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3696532..3696604 | 7..83 | 94 | | Minus |
2L | 3696294..3696471 | 84..261 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 01:36:48 Download gff for
BO16004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3696294..3696471 | 84..261 | 100 | <- | Minus |
arm_2L | 3696532..3696604 | 7..83 | 94 | | Minus |
BO16004.3prime Sequence
278 bp (278 high quality bases) assembled on 2006-06-16
> BO16004.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGCACTTTTGTTCGCAGAGCTCCTGGG
TTCCAAATCGGTTCTCATTGCCGCCGCATCCGCCGTAGATGAACTTTTCA
CACGAATTGGTTTCGGGATGATAACTGAAGCTGGGTATAAAAGCGGCACA
CTTGATGAGACCATTGCCATCAATACCAGCGGGCAGTCCACAGATAGGAT
CCTTGAGGCCGAGGGCCACAGCCACCAGGGCGAACATCAAACAGACGGCA
GCAATGAATTTCATGTCGACTGATAACT
BO16004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-PA | 249 | CG16712-RA | 1..246 | 264..19 | 1230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-RB | 381 | CG16712-RB | 61..306 | 264..19 | 1230 | 100 | Minus |
CG16712-RA | 359 | CG16712-RA | 61..306 | 264..19 | 1230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3696293..3696471 | 19..197 | 895 | 100 | Plus |
2L | 23513712 | 2L | 3696532..3696598 | 198..264 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:12:21 has no hits.
BO16004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:29 Download gff for
BO16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-PA | 1..249 | 15..264 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:40 Download gff for
BO16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 55..313 | 10..274 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:42 Download gff for
BO16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 55..313 | 10..274 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:42 Download gff for
BO16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3696294..3696471 | 20..197 | 100 | <- | Plus |
2L | 3696532..3696604 | 198..274 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:40 Download gff for
BO16004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3696294..3696471 | 20..197 | 100 | <- | Plus |
arm_2L | 3696532..3696604 | 198..274 | 94 | | Plus |
BO16004.complete Sequence
280 bp assembled on 2008-08-15
GenBank Submission: FJ633660
> BO16004.complete
GAAGTTATCAGTCGACATGAAATTCATTGCTGCCGTCTGTTTGATGTTCG
CCCTGGTGGCTGTGGCCCTCGGCCTCAAGGATCCTATCTGTGGACTGCCC
GCTGGTATTGATGGCAATGGTCTCATCAAGTGTGCCGCTTTTATACCCAG
CTTCAGTTATCATCCCGAAACCAATTCGTGTGAAAAGTTCATCTACGGCG
GATGCGGCGGCAATGAGAACCGATTTGGAACCCAGGAGCTCTGCGAACAA
AAGTGCAAGGAAGCAAGCTTTCTAGACCAT
BO16004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-RB | 249 | CG16712-PB | 1..246 | 17..262 | 1230 | 100 | Plus |
CG16712-RA | 249 | CG16712-PA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-RB | 381 | CG16712-RB | 61..306 | 17..262 | 1230 | 100 | Plus |
CG16712-RA | 359 | CG16712-RA | 61..306 | 17..262 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3696293..3696471 | 262..84 | 895 | 100 | Minus |
2L | 23513712 | 2L | 3696532..3696598 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:19:46 has no hits.
BO16004.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:46 Download gff for
BO16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 58..316 | 7..271 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:31 Download gff for
BO16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 61..306 | 17..264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:15 Download gff for
BO16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 64..309 | 17..264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:02 Download gff for
BO16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16712-RA | 61..306 | 17..264 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:02 Download gff for
BO16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3696291..3696471 | 84..264 | 98 | <- | Minus |
2L | 3696532..3696598 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:31 Download gff for
BO16004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3696291..3696471 | 84..264 | 98 | <- | Minus |
arm_2L | 3696532..3696598 | 17..83 | 100 | | Minus |
BO16004.pep Sequence
Translation from 16 to 280
> BO16004.pep
MKFIAAVCLMFALVAVALGLKDPICGLPAGIDGNGLIKCAAFIPSFSYHP
ETNSCEKFIYGGCGGNENRFGTQELCEQKCKEASFLDH
BO16004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16712-PB | 82 | CG16712-PB | 1..82 | 1..82 | 448 | 100 | Plus |
CG16712-PA | 82 | CG16712-PA | 1..82 | 1..82 | 448 | 100 | Plus |
CG16713-PA | 82 | CG16713-PA | 1..80 | 1..80 | 253 | 56.2 | Plus |
CG43165-PA | 95 | CG43165-PA | 1..81 | 1..81 | 244 | 53.1 | Plus |
Acp24A4-PC | 78 | CG31779-PC | 1..78 | 1..82 | 184 | 46.3 | Plus |