Clone Sequence Records
BO16005.3prime Sequence
311 bp (311 high quality bases) assembled on 2006-06-16
> BO16005.3prime
ATGGTCTAGAAAGCTTGCTCCATTGAACTTGCAGAAGCCCCACTTGCAAT
TTCTCACGGTGTTCGAGACGGGACGACACCAGTTGTTCTTCCAGGAACAG
TAGACCACCTGGTAAACCACCTCAGGAGCGTTGGTGGTCGTCGTGGCGGA
GCTCGATGGTGCCGCCGTTGTTGTTGTTGTTGTGGTCGTTGTACTCGTTG
TGGGTGCTGGTACCACATAGATCACTCGCCGCTTGAATCCCGATGCGGAC
TGGAAAAGAACGATTGCAGCCAAAACACAGATCACAAAGTACTTCATGTC
GACTGATAACT
BO16005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-PA | 282 | CG13738-RA | 1..279 | 297..19 | 1395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-RA | 355 | CG13738-RA | 38..316 | 297..19 | 1395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13973162..13973440 | 19..297 | 1395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:12:58 has no hits.
BO16005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:31 Download gff for
BO16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-PA | 1..282 | 15..297 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:44 Download gff for
BO16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 30..319 | 15..308 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:48 Download gff for
BO16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 30..319 | 15..308 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:48 Download gff for
BO16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13973158..13973448 | 15..308 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:44 Download gff for
BO16005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13966258..13966548 | 15..308 | 97 | | Plus |
BO16005.5prime Sequence
311 bp (311 high quality bases) assembled on 2006-06-16
> BO16005.5prime
GAAGTTATCAGTCGACATGAAGTACTTTGTGATCTGTGTTTTGGCTGCAA
TCGTTCTTTTCCAGTCCGCATCGGGATTCAAGCGGCGAGTGATCTATGTG
GTACCAGCACCCACAACGAGTACAACGACCACAACAACAACAACAACGGC
GGCACCATCGAGCTCCGCCACGACGACCACCAACGCTCCTGAGGTGGTTT
ACCAGGTGGTCTACTGTTCCTGGAAGAACAACTGGTGTCGTCCCGTCTCG
AACACCGTGAGAAATTGCAAGTGGGGCTTCTGCAAGTTCAATGGAGCAAG
CTTTCTAGACC
BO16005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-PA | 282 | CG13738-RA | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-RA | 355 | CG13738-RA | 38..316 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13973162..13973440 | 295..17 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:52:25 has no hits.
BO16005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:32 Download gff for
BO16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-PA | 1..282 | 17..299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:16:47 Download gff for
BO16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 30..319 | 6..299 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:34:34 Download gff for
BO16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 30..319 | 6..299 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 12:34:34 Download gff for
BO16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13973158..13973448 | 6..299 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:16:47 Download gff for
BO16005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13966258..13966548 | 6..299 | 97 | | Minus |
BO16005.complete Sequence
313 bp assembled on 2008-08-15
GenBank Submission: FJ633661
> BO16005.complete
GAAGTTATCAGTCGACATGAAGTACTTTGTGATCTGTGTTTTGGCTGCAA
TCGTTCTTTTCCAGTCCGCATCGGGATTCAAGCGGCGAGTGATCTATGTG
GTACCAGCACCCACAACGAGTACAACGACCACAACAACAACAACAACGGC
GGCACCATCGAGCTCCGCCACGACGACCACCAACGCTCCTGAGGTGGTTT
ACCAGGTGGTCTACTGTTCCTGGAAGAACAACTGGTGTCGTCCCGTCTCG
AACACCGTGAGAAATTGCAAGTGGGGCTTCTGCAAGTTCAATGGAGCAAG
CTTTCTAGACCAT
BO16005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-RA | 282 | CG13738-PA | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-RA | 355 | CG13738-RA | 38..316 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13973162..13973440 | 295..17 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:58:34 has no hits.
BO16005.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:49 Download gff for
BO16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 26..315 | 6..299 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:31 Download gff for
BO16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 38..316 | 17..297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:00 Download gff for
BO16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 34..312 | 17..297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:06 Download gff for
BO16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13738-RA | 38..316 | 17..297 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:06 Download gff for
BO16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13973160..13973440 | 17..297 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:31 Download gff for
BO16005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13966260..13966540 | 17..297 | 99 | | Minus |
BO16005.pep Sequence
Translation from 16 to 313
> BO16005.pep
MKYFVICVLAAIVLFQSASGFKRRVIYVVPAPTTSTTTTTTTTTAAPSSS
ATTTTNAPEVVYQVVYCSWKNNWCRPVSNTVRNCKWGFCKFNGASFLDH
BO16005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13738-PA | 93 | CG13738-PA | 1..93 | 1..93 | 502 | 100 | Plus |
