Clone Sequence Records
BO16006.5prime Sequence
227 bp (227 high quality bases) assembled on 2006-06-16
> BO16006.5prime
GAAGTTATCAGTCGACATGCATCTGAACCTGAAATATTTCATTGGTCTGC
TACTGGTGCTGCTTTGCAGCTCTTTTGCGGTGGCCTATCCCCAGGGGCCT
GGGTGTGGTCCACCACCAAGTGGAACACCTCCGTCGGGACCGCGACCATC
GGGTCCACCACCTGGAGGTCGCTGCGGACCACCACCATCGACCACGGCTG
CATCTACCGGTGCAAGCTTTCTAGACC
BO16006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:23:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11368-PA | 198 | CG11368-RA | 1..195 | 17..211 | 950 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11368-RA | 361 | CG11368-RA | 29..223 | 17..211 | 960 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7452373..7452505 | 79..211 | 650 | 99.2 | Plus |
X | 23542271 | X | 7452237..7452301 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 06:31:07 has no hits.
BO16006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:33 Download gff for
BO16006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-PA | 1..198 | 17..215 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:09:26 Download gff for
BO16006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-RA | 29..230 | 17..220 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:41:43 Download gff for
BO16006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-RA | 29..230 | 17..220 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:41:43 Download gff for
BO16006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7452237..7452299 | 17..79 | 100 | -> | Plus |
X | 7452374..7452512 | 80..220 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:09:26 Download gff for
BO16006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7346270..7346332 | 17..79 | 100 | -> | Plus |
arm_X | 7346407..7346545 | 80..220 | 96 | | Plus |
BO16006.3prime Sequence
227 bp (227 high quality bases) assembled on 2006-06-16
> BO16006.3prime
ATGGTCTAGAAAGCTTGCACCGGTAGATGCAGCCGTGGTCGATGGTGGTG
GTCCGCAGCGACCTCCAGGTGGTGGACCCGATGGTCGCGGTCCCGACGGA
GGTGTTCCACTTGGTGGTGGACCACACCCAGGCCCCTGGGGATAGGCCAC
CGCAAAAGAGCTGCAAAGCAGCACCAGTAGCAGACCAATGAAATATTTCA
GGTTCAGATGCATGTCGACTGATAACT
BO16006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11368-PA | 198 | CG11368-RA | 1..195 | 213..19 | 950 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11368-RA | 361 | CG11368-RA | 29..223 | 213..19 | 960 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7452373..7452505 | 151..19 | 650 | 99.2 | Minus |
X | 23542271 | X | 7452237..7452301 | 213..149 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:52:52 has no hits.
BO16006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:32 Download gff for
BO16006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-PA | 1..198 | 15..213 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:16:51 Download gff for
BO16006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-RA | 29..230 | 10..213 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:34:37 Download gff for
BO16006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-RA | 29..230 | 10..213 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 12:34:37 Download gff for
BO16006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7452237..7452299 | 151..213 | 100 | -> | Minus |
X | 7452374..7452512 | 10..150 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:16:51 Download gff for
BO16006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7346270..7346332 | 151..213 | 100 | -> | Minus |
arm_X | 7346407..7346545 | 10..150 | 96 | | Minus |
BO16006.complete Sequence
229 bp assembled on 2008-08-15
GenBank Submission: FJ633662
> BO16006.complete
GAAGTTATCAGTCGACATGCATCTGAACCTGAAATATTTCATTGGTCTGC
TACTGGTGCTGCTTTGCAGCTCTTTTGCGGTGGCCTATCCCCAGGGGCCT
GGGTGTGGTCCACCACCAAGTGGAACACCTCCGTCGGGACCGCGACCATC
GGGTCCACCACCTGGAGGTCGCTGCGGACCACCACCATCGACCACGGCTG
CATCTACCGGTGCAAGCTTTCTAGACCAT
BO16006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11368-RA | 198 | CG11368-PA | 1..195 | 17..211 | 960 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11368-RA | 361 | CG11368-RA | 29..223 | 17..211 | 960 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7452373..7452505 | 79..211 | 650 | 99.2 | Plus |
X | 23542271 | X | 7452237..7452301 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:09:17 has no hits.
BO16006.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:12 Download gff for
BO16006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-RA | 30..231 | 17..220 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:35 Download gff for
BO16006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-RA | 29..223 | 17..213 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:23 Download gff for
BO16006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-RA | 30..224 | 17..213 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:48 Download gff for
BO16006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11368-RA | 29..223 | 17..213 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:48 Download gff for
BO16006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7452237..7452299 | 17..79 | 100 | -> | Plus |
X | 7452374..7452505 | 80..213 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:35 Download gff for
BO16006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7346270..7346332 | 17..79 | 100 | -> | Plus |
arm_X | 7346407..7346538 | 80..213 | 97 | | Plus |
BO16006.pep Sequence
Translation from 16 to 229
> BO16006.pep
MHLNLKYFIGLLLVLLCSSFAVAYPQGPGCGPPPSGTPPSGPRPSGPPPG
GRCGPPPSTTAASTGASFLDH
BO16006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11368-PA | 65 | CG11368-PA | 1..65 | 1..65 | 367 | 100 | Plus |