Clone Sequence Records
BO16013.5prime Sequence
269 bp (269 high quality bases) assembled on 2006-06-16
> BO16013.5prime
GAAGTTATCAGTCGACATGAAATTCTTGATTTTCTGTCTGATTGCTCTGT
TTGCCATAGCCTCGGCGCGTCCCCAGTTCGGATTCGGCGGATTTGGTGGC
GGGCTTGAGCAGCAGCAACAGCAGGGCGGTTTTGGACAAGGATTCGGTGG
TTTCGGTTCCTTTGGACAGCAGCAACAGCAGGAAAGTTTTGGCGGAAATG
GAAACTTTGGTCAGCAGCAACAAGAGTTTGGTGGTTTCGGCGGTTTTTAC
GGTGCAAGCTTTCTAGACC
BO16013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-PA | 240 | CG4440-RA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 04:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-RB | 538 | CG4440-RB | 84..320 | 17..253 | 1185 | 100 | Plus |
CG4440-RA | 384 | CG4440-RA | 84..320 | 17..253 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 04:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16330078..16330303 | 28..253 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 04:44:04 has no hits.
BO16013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:37 Download gff for
BO16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-PA | 1..240 | 17..257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:11:14 Download gff for
BO16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 79..323 | 12..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:24:35 Download gff for
BO16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 79..323 | 12..257 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:24:35 Download gff for
BO16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16330074..16330306 | 23..257 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:11:14 Download gff for
BO16013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16330074..16330306 | 23..257 | 98 | | Plus |
BO16013.complete Sequence
271 bp assembled on 2008-08-15
GenBank Submission: FJ633665
> BO16013.complete
GAAGTTATCAGTCGACATGAAATTCTTGATTTTCTGTCTGATTGCTCTGT
TTGCCATAGCCTCGGCGCGTCCCCAGTTCGGATTCGGCGGATTTGGTGGC
GGGCTTGAGCAGCAGCAACAGCAGGGCGGTTTTGGACAAGGATTCGGTGG
TTTCGGTTCCTTTGGACAGCAGCAACAGCAGGAAAGTTTTGGCGGAAATG
GAAACTTTGGTCAGCAGCAACAAGAGTTTGGTGGTTTCGGCGGTTTTTAC
GGTGCAAGCTTTCTAGACCAT
BO16013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-RB | 240 | CG4440-PB | 1..237 | 17..253 | 1185 | 100 | Plus |
CG4440-RA | 240 | CG4440-PA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-RB | 538 | CG4440-RB | 84..320 | 17..253 | 1185 | 100 | Plus |
CG4440-RA | 384 | CG4440-RA | 84..320 | 17..253 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16330078..16330303 | 28..253 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:19:21 has no hits.
BO16013.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:13:17 Download gff for
BO16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 77..321 | 12..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:43 Download gff for
BO16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 84..320 | 17..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:54 Download gff for
BO16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 82..318 | 17..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:03 Download gff for
BO16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4440-RA | 84..320 | 17..255 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:03 Download gff for
BO16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16330074..16330303 | 23..255 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:43 Download gff for
BO16013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16330074..16330303 | 23..255 | 98 | | Plus |
BO16013.pep Sequence
Translation from 16 to 271
> BO16013.pep
MKFLIFCLIALFAIASARPQFGFGGFGGGLEQQQQQGGFGQGFGGFGSFG
QQQQQESFGGNGNFGQQQQEFGGFGGFYGASFLDH
BO16013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4440-PB | 79 | CG4440-PB | 1..79 | 1..79 | 429 | 100 | Plus |
CG4440-PA | 79 | CG4440-PA | 1..79 | 1..79 | 429 | 100 | Plus |
CG15282-PB | 79 | CG15282-PB | 1..78 | 1..74 | 228 | 66.7 | Plus |
CG15282-PC | 79 | CG15282-PC | 1..78 | 1..74 | 228 | 66.7 | Plus |
CG15282-PA | 79 | CG15282-PA | 1..78 | 1..74 | 228 | 66.7 | Plus |