Clone Sequence Records
BO16016.3prime Sequence
260 bp (260 high quality bases) assembled on 2006-06-16
> BO16016.3prime
ATGGTCTAGAAAGCTTGCTCCGGACTTCTTGTTGAACAGCAGGGACAGGA
GCTGTTGCTTGATTGGCTTAGTGGTGGTGGTGTCCGTGGTGTAGGTGTAG
GTGGGGTAGGTCGGGGTGGTAGTATAGGTGTACGTCGTCGTCGTGGGCGA
AGAGGGCGTTGTGGGAGTGCTGGTTGTAGTTGCGGTAGATGCCATTGCGA
TGGCCAGGACAGCGGAGAAACAGACGAGGACAGCGAAGAACTTCATGTCG
ACTGATAACT
BO16016.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13159-PA | 231 | CG13159-RA | 1..228 | 246..19 | 1140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13159-RA | 393 | CG13159-RA | 82..311 | 248..19 | 1150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12375367..12375596 | 248..19 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 06:32:26 has no hits.
BO16016.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:42 Download gff for
BO16016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-PA | 1..231 | 18..246 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:09:50 Download gff for
BO16016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-RA | 76..317 | 13..254 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:42:00 Download gff for
BO16016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-RA | 76..317 | 13..254 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:42:00 Download gff for
BO16016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12375361..12375602 | 13..254 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:09:50 Download gff for
BO16016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8262866..8263107 | 13..254 | 97 | | Minus |
BO16016.5prime Sequence
260 bp (260 high quality bases) assembled on 2006-06-16
> BO16016.5prime
GAAGTTATCAGTCGACATGAAGTTCTTCGCTGTCCTCGTCTGTTTCTCCG
CTGTCCTGGCCATCGCAATGGCATCTACCGCAACTACAACCAGCACTCCC
ACAACGCCCTCTTCGCCCACGACGACGACGTACACCTATACTACCACCCC
GACCTACCCCACCTACACCTACACCACGGACACCACCACCACTAAGCCAA
TCAAGCAACAGCTCCTGTCCCTGCTGTTCAACAAGAAGTCCGGAGCAAGC
TTTCTAGACC
BO16016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13159-PA | 231 | CG13159-RA | 1..228 | 17..244 | 1140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13159-RA | 393 | CG13159-RA | 82..311 | 15..244 | 1150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12375367..12375596 | 15..244 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:05:43 has no hits.
BO16016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:43 Download gff for
BO16016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-PA | 1..231 | 17..245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:18 Download gff for
BO16016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-RA | 76..317 | 9..250 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:08 Download gff for
BO16016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-RA | 76..317 | 9..250 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:08 Download gff for
BO16016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12375361..12375602 | 9..250 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:18 Download gff for
BO16016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8262866..8263107 | 9..250 | 97 | | Plus |
BO16016.complete Sequence
262 bp assembled on 2008-08-15
GenBank Submission: FJ633667
> BO16016.complete
GAAGTTATCAGTCGACATGAAGTTCTTCGCTGTCCTCGTCTGTTTCTCCG
CTGTCCTGGCCATCGCAATGGCATCTACCGCAACTACAACCAGCACTCCC
ACAACGCCCTCTTCGCCCACGACGACGACGTACACCTATACTACCACCCC
GACCTACCCCACCTACACCTACACCACGGACACCACCACCACTAAGCCAA
TCAAGCAACAGCTCCTGTCCCTGCTGTTCAACAAGAAGTCCGGAGCAAGC
TTTCTAGACCAT
BO16016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13159-RA | 231 | CG13159-PA | 1..228 | 17..244 | 1140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13159-RA | 393 | CG13159-RA | 82..311 | 15..244 | 1150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12375367..12375596 | 15..244 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:55:59 has no hits.
BO16016.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:50:23 Download gff for
BO16016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-RA | 73..314 | 9..250 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:59 Download gff for
BO16016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-RA | 84..311 | 17..246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:04 Download gff for
BO16016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-RA | 81..308 | 17..246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:23 Download gff for
BO16016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13159-RA | 84..311 | 17..246 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:23 Download gff for
BO16016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12375369..12375596 | 17..246 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:59 Download gff for
BO16016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8262874..8263101 | 17..246 | 99 | | Plus |
BO16016.pep Sequence
Translation from 16 to 262
> BO16016.pep
MKFFAVLVCFSAVLAIAMASTATTTSTPTTPSSPTTTTYTYTTTPTYPTY
TYTTDTTTTKPIKQQLLSLLFNKKSGASFLDH
BO16016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13159-PA | 76 | CG13159-PA | 1..76 | 1..76 | 389 | 100 | Plus |